Wall clock time and date at job start Sun Mar 29 2020 21:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.90738 * 2 1 4 4 C 1.53995 * 110.07929 * 121.20478 * 2 1 3 5 5 H 1.09004 * 110.31223 * 239.58425 * 4 2 1 6 6 N 1.46894 * 110.31029 * 1.75719 * 4 2 1 7 7 C 1.46905 * 111.00415 * 156.66164 * 6 4 2 8 8 C 1.46900 * 110.99863 * 280.61496 * 6 4 2 9 9 C 1.54598 * 105.13847 * 120.67146 * 4 2 1 10 10 C 1.54937 * 102.92162 * 21.95625 * 9 4 2 11 11 N 1.47901 * 109.91855 * 238.89160 * 2 1 3 12 12 C 1.46905 * 110.99506 * 94.61086 * 11 2 1 13 13 C 1.50697 * 109.46890 * 170.00173 * 12 11 2 14 14 H 1.07999 * 120.00231 * 359.97438 * 13 12 11 15 15 C 1.37883 * 120.00036 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99938 * 359.72518 * 15 13 12 17 17 Si 1.86800 * 119.99751 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47248 * 90.00427 * 17 15 13 19 19 H 1.48509 * 109.46786 * 209.99947 * 17 15 13 20 20 H 1.48499 * 109.47549 * 329.99710 * 17 15 13 21 21 H 1.08996 * 109.47445 * 192.21844 * 1 2 3 22 22 H 1.09001 * 109.47253 * 312.22048 * 1 2 3 23 23 H 1.09009 * 109.47140 * 72.21867 * 1 2 3 24 24 H 1.09003 * 109.46719 * 52.80477 * 7 6 4 25 25 H 1.08991 * 109.47241 * 172.80920 * 7 6 4 26 26 H 1.08996 * 109.46703 * 292.81188 * 7 6 4 27 27 H 1.09001 * 109.47096 * 42.88064 * 8 6 4 28 28 H 1.09001 * 109.47717 * 162.88679 * 8 6 4 29 29 H 1.09006 * 109.47332 * 282.88865 * 8 6 4 30 30 H 1.09009 * 110.72401 * 140.31612 * 9 4 2 31 31 H 1.08993 * 110.72262 * 263.59568 * 9 4 2 32 32 H 1.08995 * 110.66649 * 204.14676 * 10 9 4 33 33 H 1.09003 * 110.66431 * 81.02165 * 10 9 4 34 34 H 1.08997 * 109.47435 * 50.00069 * 12 11 2 35 35 H 1.09000 * 109.46763 * 289.99711 * 12 11 2 36 36 H 0.97002 * 120.00095 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9011 1.0248 0.0000 4 6 2.0586 -0.7494 1.2371 5 1 2.6746 -0.0874 1.8458 6 7 0.9404 -1.2785 2.0292 7 6 1.3710 -2.4152 2.8542 8 6 0.3372 -0.2257 2.8572 9 6 2.9122 -1.9083 0.6729 10 6 3.2707 -1.4132 -0.7509 11 7 2.0338 -0.7184 -1.1906 12 6 2.3168 0.2158 -2.2884 13 6 3.0519 -0.5080 -3.3869 14 1 3.2858 -1.5569 -3.2801 15 6 3.4257 0.1689 -4.5285 16 7 3.1361 1.4449 -4.6610 17 14 4.3375 -0.7282 -5.8899 18 1 3.3580 -1.2997 -6.8486 19 1 5.2277 0.2246 -6.6006 20 1 5.1519 -1.8224 -5.3027 21 1 -0.3634 -1.0043 0.2175 22 1 -0.3634 0.6906 0.7611 23 1 -0.3634 0.3139 -0.9787 24 1 2.2424 -2.1276 3.4424 25 1 0.5610 -2.7062 3.5229 26 1 1.6291 -3.2550 2.2091 27 1 0.2418 0.6880 2.2705 28 1 -0.6490 -0.5471 3.1922 29 1 0.9714 -0.0366 3.7234 30 1 3.8130 -2.0502 1.2702 31 1 2.3303 -2.8286 0.6261 32 1 3.4928 -2.2553 -1.4063 33 1 4.1105 -0.7192 -0.7167 34 1 2.9323 1.0357 -1.9183 35 1 1.3795 0.6125 -2.6786 36 1 3.3988 1.9210 -5.4642 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306547220.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:37 Heat of formation + Delta-G solvation = 21.896722 kcal Electronic energy + Delta-G solvation = -14958.254886 eV Core-core repulsion = 12670.891473 eV Total energy + Delta-G solvation = -2287.363412 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.24617 -35.88310 -32.77388 -31.08946 -30.09063 -27.23816 -26.13267 -25.31238 -22.62965 -22.25974 -19.99470 -18.72833 -16.38400 -15.68878 -15.45306 -14.65431 -14.52565 -14.12229 -13.56444 -13.34511 -12.53937 -12.34027 -12.25127 -12.16501 -11.72727 -11.42484 -11.14469 -11.00630 -10.79955 -10.70796 -10.46539 -10.30757 -10.26275 -10.04775 -9.72250 -9.03043 -8.43034 -8.09015 -7.21304 -6.00798 -4.02038 3.33627 3.39298 3.42659 4.10515 4.44903 4.94575 5.01917 5.23335 5.33044 5.38567 5.39964 5.52861 5.57858 5.73715 5.83289 5.89804 5.92553 6.11345 6.16160 6.20221 6.22647 6.50720 6.67940 6.71193 6.76767 7.06077 7.21308 7.28177 7.36388 7.44971 7.81563 8.06760 8.27944 8.58517 9.06101 9.62324 11.10651 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.057225 B = 0.007435 C = 0.006849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.175568 B = 3764.902449 C = 4087.152855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.070 3.930 3 H 0.038 0.962 4 C 0.077 3.923 5 H 0.040 0.960 6 N -0.529 5.529 7 C 0.023 3.977 8 C 0.018 3.982 9 C -0.126 4.126 10 C 0.055 3.945 11 N -0.507 5.507 12 C 0.185 3.815 13 C -0.512 4.512 14 H 0.063 0.937 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.274 1.274 21 H 0.074 0.926 22 H 0.042 0.958 23 H 0.046 0.954 24 H 0.020 0.980 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.019 0.981 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.037 0.963 34 H -0.010 1.010 35 H 0.032 0.968 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.530 -4.402 13.564 14.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.040 4.040 3 H 0.056 0.944 4 C -0.032 4.032 5 H 0.058 0.942 6 N -0.253 5.253 7 C -0.125 4.125 8 C -0.130 4.130 9 C -0.164 4.164 10 C -0.073 4.073 11 N -0.232 5.232 12 C 0.060 3.940 13 C -0.550 4.550 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.725 3.275 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.199 1.199 21 H 0.093 0.907 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.039 0.961 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.056 0.944 34 H 0.008 0.992 35 H 0.050 0.950 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.258 -4.773 12.907 14.142 hybrid contribution 1.777 0.665 0.030 1.897 sum -1.481 -4.109 12.937 13.655 Atomic orbital electron populations 1.21694 0.94179 1.02305 0.99821 1.22346 0.96851 0.94937 0.89867 0.94423 1.22593 0.90226 0.96016 0.94366 0.94177 1.62127 1.30414 1.08375 1.24357 1.22425 0.98729 0.94867 0.96484 1.22611 0.99070 0.95728 0.95616 1.22792 0.98069 0.98407 0.97164 1.22899 0.92711 0.98688 0.93011 1.64806 1.25577 1.27807 1.05038 1.19881 0.96117 0.89970 0.88072 1.21228 1.35726 0.96597 1.01459 0.91858 1.24997 0.96285 0.94873 0.98414 1.69965 1.47237 1.08527 1.28014 0.86510 0.79617 0.79361 0.81992 1.20587 1.21342 1.19883 0.90727 0.93915 0.93479 0.96125 0.92020 0.90860 0.90622 0.91619 0.96240 0.92303 0.90074 0.90317 0.94435 0.99244 0.94978 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.14 8.27 37.15 0.31 -1.83 16 2 C 0.07 1.33 2.91 -66.65 -0.19 1.14 16 3 H 0.04 0.77 7.57 -51.93 -0.39 0.37 16 4 C 0.08 1.23 2.79 -66.36 -0.19 1.04 16 5 H 0.04 0.63 8.01 -51.93 -0.42 0.21 16 6 N -0.53 -7.37 3.28 -241.53 -0.79 -8.17 16 7 C 0.02 0.27 8.76 60.07 0.53 0.80 16 8 C 0.02 0.21 8.75 60.06 0.53 0.74 16 9 C -0.13 -2.02 5.58 -24.87 -0.14 -2.16 16 10 C 0.06 1.12 5.55 -1.90 -0.01 1.11 16 11 N -0.51 -11.44 5.02 -224.01 -1.12 -12.56 16 12 C 0.19 4.99 4.79 -4.97 -0.02 4.97 16 13 C -0.51 -14.62 8.56 -34.44 -0.29 -14.92 16 14 H 0.06 1.77 6.52 -52.49 -0.34 1.43 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 17 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H 0.07 1.32 7.10 -51.93 -0.37 0.95 16 22 H 0.04 0.64 5.66 -51.93 -0.29 0.34 16 23 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 24 H 0.02 0.23 8.11 -51.93 -0.42 -0.19 16 25 H 0.06 0.62 8.06 -51.93 -0.42 0.20 16 26 H 0.07 0.86 6.26 -51.93 -0.33 0.53 16 27 H 0.08 0.94 5.41 -51.93 -0.28 0.65 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.02 0.21 8.04 -51.93 -0.42 -0.21 16 30 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 31 H 0.08 1.27 6.40 -51.93 -0.33 0.94 16 32 H 0.08 1.63 7.14 -51.93 -0.37 1.26 16 33 H 0.04 0.79 8.02 -51.93 -0.42 0.38 16 34 H -0.01 -0.29 7.81 -51.93 -0.41 -0.70 16 35 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 274.86 15.07 4.14 4.14 Total: -1.00 -30.14 274.86 -7.67 -37.81 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -6.03 Total: -4.09 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 0.42 Total: -7.61 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -1.18 Total: -47.12 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.14 -7.67 -37.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306547220.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.705 kcal (2) G-P(sol) polarization free energy of solvation -30.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds