Wall clock time and date at job start Sun Mar 29 2020 21:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.90738 * 2 1 4 4 C 1.53995 * 110.07929 * 121.20478 * 2 1 3 5 5 H 1.09004 * 110.31223 * 239.58425 * 4 2 1 6 6 N 1.46894 * 110.31029 * 1.75719 * 4 2 1 7 7 C 1.46905 * 111.00415 * 156.66164 * 6 4 2 8 8 C 1.46900 * 110.99863 * 280.61496 * 6 4 2 9 9 C 1.54598 * 105.13847 * 120.67146 * 4 2 1 10 10 C 1.54937 * 102.92162 * 21.95625 * 9 4 2 11 11 N 1.47901 * 109.91855 * 238.89160 * 2 1 3 12 12 C 1.46905 * 110.99506 * 94.61086 * 11 2 1 13 13 C 1.50697 * 109.46890 * 170.00173 * 12 11 2 14 14 H 1.07999 * 120.00231 * 359.97438 * 13 12 11 15 15 C 1.37883 * 120.00036 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99938 * 359.72518 * 15 13 12 17 17 Si 1.86800 * 119.99751 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47248 * 90.00427 * 17 15 13 19 19 H 1.48509 * 109.46786 * 209.99947 * 17 15 13 20 20 H 1.48499 * 109.47549 * 329.99710 * 17 15 13 21 21 H 1.08996 * 109.47445 * 192.21844 * 1 2 3 22 22 H 1.09001 * 109.47253 * 312.22048 * 1 2 3 23 23 H 1.09009 * 109.47140 * 72.21867 * 1 2 3 24 24 H 1.09003 * 109.46719 * 52.80477 * 7 6 4 25 25 H 1.08991 * 109.47241 * 172.80920 * 7 6 4 26 26 H 1.08996 * 109.46703 * 292.81188 * 7 6 4 27 27 H 1.09001 * 109.47096 * 42.88064 * 8 6 4 28 28 H 1.09001 * 109.47717 * 162.88679 * 8 6 4 29 29 H 1.09006 * 109.47332 * 282.88865 * 8 6 4 30 30 H 1.09009 * 110.72401 * 140.31612 * 9 4 2 31 31 H 1.08993 * 110.72262 * 263.59568 * 9 4 2 32 32 H 1.08995 * 110.66649 * 204.14676 * 10 9 4 33 33 H 1.09003 * 110.66431 * 81.02165 * 10 9 4 34 34 H 1.08997 * 109.47435 * 50.00069 * 12 11 2 35 35 H 1.09000 * 109.46763 * 289.99711 * 12 11 2 36 36 H 0.97002 * 120.00095 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9011 1.0248 0.0000 4 6 2.0586 -0.7494 1.2371 5 1 2.6746 -0.0874 1.8458 6 7 0.9404 -1.2785 2.0292 7 6 1.3710 -2.4152 2.8542 8 6 0.3372 -0.2257 2.8572 9 6 2.9122 -1.9083 0.6729 10 6 3.2707 -1.4132 -0.7509 11 7 2.0338 -0.7184 -1.1906 12 6 2.3168 0.2158 -2.2884 13 6 3.0519 -0.5080 -3.3869 14 1 3.2858 -1.5569 -3.2801 15 6 3.4257 0.1689 -4.5285 16 7 3.1361 1.4449 -4.6610 17 14 4.3375 -0.7282 -5.8899 18 1 3.3580 -1.2997 -6.8486 19 1 5.2277 0.2246 -6.6006 20 1 5.1519 -1.8224 -5.3027 21 1 -0.3634 -1.0043 0.2175 22 1 -0.3634 0.6906 0.7611 23 1 -0.3634 0.3139 -0.9787 24 1 2.2424 -2.1276 3.4424 25 1 0.5610 -2.7062 3.5229 26 1 1.6291 -3.2550 2.2091 27 1 0.2418 0.6880 2.2705 28 1 -0.6490 -0.5471 3.1922 29 1 0.9714 -0.0366 3.7234 30 1 3.8130 -2.0502 1.2702 31 1 2.3303 -2.8286 0.6261 32 1 3.4928 -2.2553 -1.4063 33 1 4.1105 -0.7192 -0.7167 34 1 2.9323 1.0357 -1.9183 35 1 1.3795 0.6125 -2.6786 36 1 3.3988 1.9210 -5.4642 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306547220.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:37 Heat of formation + Delta-G solvation = 0.972366 kcal Electronic energy + Delta-G solvation = -14959.162234 eV Core-core repulsion = 12670.891473 eV Total energy + Delta-G solvation = -2288.270761 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.66183 -37.30198 -34.87005 -32.52517 -31.81650 -28.27559 -28.01054 -26.77801 -24.23607 -23.80563 -21.60607 -20.17801 -18.40295 -17.31454 -16.86318 -16.24867 -15.75669 -15.65698 -15.11780 -14.88280 -14.29373 -13.99183 -13.64650 -13.15222 -13.11610 -12.93636 -12.76044 -12.75367 -12.56287 -12.16734 -12.05024 -11.85934 -11.75667 -11.57602 -11.47787 -11.09711 -10.64870 -9.18642 -9.03729 -8.23319 -6.33992 1.39571 1.42067 1.52803 2.38949 3.03730 3.09855 3.35132 3.67125 3.85783 4.21370 4.31888 4.39858 4.51775 4.55811 4.63704 4.70712 4.78098 4.80346 4.83983 4.99244 5.01463 5.04123 5.13763 5.15779 5.23902 5.32303 5.38223 5.58346 5.67213 5.97726 6.17938 6.21227 6.31867 6.59694 6.83400 7.36429 8.89073 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.057225 B = 0.007435 C = 0.006849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.175568 B = 3764.902449 C = 4087.152855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.062 3.938 3 H 0.017 0.983 4 C 0.087 3.913 5 H 0.047 0.953 6 N -0.542 5.542 7 C 0.023 3.977 8 C 0.018 3.982 9 C -0.110 4.110 10 C 0.051 3.949 11 N -0.517 5.517 12 C 0.203 3.797 13 C -0.530 4.530 14 H 0.066 0.934 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.973 3.027 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.262 1.262 21 H 0.077 0.923 22 H 0.070 0.930 23 H 0.019 0.981 24 H 0.029 0.971 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.031 0.969 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.021 0.979 34 H -0.042 1.042 35 H -0.002 1.002 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.260 -6.052 14.879 16.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.048 4.048 3 H 0.035 0.965 4 C -0.022 4.022 5 H 0.065 0.935 6 N -0.266 5.266 7 C -0.125 4.125 8 C -0.130 4.130 9 C -0.148 4.148 10 C -0.077 4.077 11 N -0.242 5.242 12 C 0.077 3.923 13 C -0.568 4.568 14 H 0.085 0.915 15 C -0.198 4.198 16 N -0.576 5.576 17 Si 0.797 3.203 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.186 1.186 21 H 0.096 0.904 22 H 0.088 0.912 23 H 0.038 0.962 24 H 0.047 0.953 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.050 0.950 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.039 0.961 34 H -0.024 1.024 35 H 0.017 0.983 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.998 -6.438 14.254 15.926 hybrid contribution 1.644 1.209 -0.318 2.066 sum -1.354 -5.229 13.936 14.946 Atomic orbital electron populations 1.21616 0.92941 1.03089 0.99166 1.22476 0.97823 0.94150 0.90322 0.96490 1.22377 0.90878 0.95670 0.93275 0.93517 1.62064 1.29449 1.09482 1.25611 1.22482 0.99852 0.93677 0.96460 1.22641 1.00036 0.94805 0.95506 1.22713 0.99378 0.98403 0.94291 1.22931 0.91256 0.97736 0.95823 1.64721 1.26769 1.27046 1.05671 1.19484 0.93542 0.89811 0.89504 1.21541 1.36138 0.96868 1.02258 0.91543 1.25987 0.97023 0.95663 1.01115 1.70104 1.48236 1.10262 1.28972 0.85334 0.78339 0.78277 0.78383 1.19789 1.20654 1.18585 0.90393 0.91180 0.96216 0.95256 0.90165 0.90955 0.91625 0.89922 0.95001 0.89430 0.89215 0.91163 0.96093 1.02393 0.98346 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.86 8.27 71.98 0.60 -3.27 16 2 C 0.06 2.39 2.91 45.06 0.13 2.52 16 3 H 0.02 0.72 7.57 -2.39 -0.02 0.71 16 4 C 0.09 2.64 2.79 45.80 0.13 2.77 16 5 H 0.05 1.37 8.01 -2.38 -0.02 1.35 16 6 N -0.54 -13.55 3.28 -918.07 -3.01 -16.56 16 7 C 0.02 0.44 8.76 127.69 1.12 1.56 16 8 C 0.02 0.37 8.75 127.69 1.12 1.49 16 9 C -0.11 -3.28 5.58 31.80 0.18 -3.10 16 10 C 0.05 2.06 5.55 86.65 0.48 2.54 16 11 N -0.52 -23.97 5.02 -862.64 -4.33 -28.30 16 12 C 0.20 11.54 4.79 85.56 0.41 11.95 16 13 C -0.53 -31.11 8.56 25.60 0.22 -30.89 16 14 H 0.07 3.77 6.52 -2.91 -0.02 3.76 16 15 C 0.00 0.01 5.46 84.66 0.46 0.47 16 16 N -0.94 -58.03 13.29 21.45 0.28 -57.74 16 17 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 18 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 20 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 21 H 0.08 2.67 7.10 -2.39 -0.02 2.65 16 22 H 0.07 2.04 5.66 -2.39 -0.01 2.02 16 23 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 24 H 0.03 0.53 8.11 -2.39 -0.02 0.51 16 25 H 0.08 1.28 8.06 -2.39 -0.02 1.27 16 26 H 0.07 1.43 6.26 -2.39 -0.01 1.41 16 27 H 0.07 1.48 5.41 -2.39 -0.01 1.47 16 28 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.03 0.59 8.04 -2.38 -0.02 0.57 16 30 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 31 H 0.09 2.57 6.40 -2.39 -0.02 2.55 16 32 H 0.07 2.92 7.14 -2.39 -0.02 2.90 16 33 H 0.02 0.90 8.02 -2.39 -0.02 0.88 16 34 H -0.04 -2.55 7.81 -2.39 -0.02 -2.57 16 35 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 36 H 0.26 15.36 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -66.39 274.86 0.84 -65.56 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: 1.03 Total: 3.88 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: 4.84 Total: -13.97 kcal Atomic # 7 Polarization: -95.55 SS G_CDS: -7.06 Total: -102.61 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -66.39 0.84 -65.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306547220.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.528 kcal (2) G-P(sol) polarization free energy of solvation -66.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds