Wall clock time and date at job start Sun Mar 29 2020 21:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 110.01381 * 2 1 4 4 C 1.54327 * 109.88630 * 121.11347 * 2 1 3 5 5 H 1.08995 * 110.85278 * 23.23598 * 4 2 1 6 6 N 1.46897 * 110.70353 * 260.07340 * 4 2 1 7 7 C 1.46900 * 111.00299 * 62.85941 * 6 4 2 8 8 C 1.46899 * 110.99903 * 186.81298 * 6 4 2 9 9 C 1.55138 * 103.01909 * 141.68899 * 4 2 1 10 10 C 1.54904 * 101.65179 * 324.34703 * 9 4 2 11 11 N 1.47445 * 109.88976 * 238.87720 * 2 1 3 12 12 C 1.46897 * 110.99809 * 3.85724 * 11 2 1 13 13 C 1.50705 * 109.46760 * 169.27809 * 12 11 2 14 14 H 1.07999 * 120.00373 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99763 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99932 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99874 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47448 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46953 * 120.00494 * 17 15 13 20 20 H 1.48504 * 109.47330 * 239.99978 * 17 15 13 21 21 H 1.09001 * 109.47259 * 298.89240 * 1 2 3 22 22 H 1.09000 * 109.46841 * 58.88684 * 1 2 3 23 23 H 1.08998 * 109.47184 * 178.88323 * 1 2 3 24 24 H 1.09001 * 109.47181 * 180.02562 * 7 6 4 25 25 H 1.08999 * 109.47300 * 59.99658 * 7 6 4 26 26 H 1.09008 * 109.46977 * 299.99858 * 7 6 4 27 27 H 1.09003 * 109.47180 * 301.73615 * 8 6 4 28 28 H 1.09002 * 109.47269 * 61.74510 * 8 6 4 29 29 H 1.08998 * 109.46985 * 181.74108 * 8 6 4 30 30 H 1.09005 * 110.98804 * 82.43749 * 9 4 2 31 31 H 1.08995 * 110.98953 * 206.25143 * 9 4 2 32 32 H 1.09004 * 110.37226 * 155.90614 * 10 9 4 33 33 H 1.09000 * 110.37385 * 278.12780 * 10 9 4 34 34 H 1.09001 * 109.47308 * 289.27970 * 12 11 2 35 35 H 1.09000 * 109.47242 * 49.27973 * 12 11 2 36 36 H 0.97004 * 119.99737 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0241 0.0000 4 6 2.0550 -0.7499 1.2425 5 1 1.3068 -1.4470 1.6198 6 7 2.4544 0.1982 2.2910 7 6 1.3039 0.9844 2.7560 8 6 3.1034 -0.4974 3.4103 9 6 3.2891 -1.5135 0.6943 10 6 2.8189 -1.8834 -0.7346 11 7 2.0316 -0.7166 -1.1869 12 6 0.9240 -1.1341 -2.0569 13 6 1.4748 -1.6225 -3.3719 14 1 2.5410 -1.6231 -3.5440 15 6 0.6176 -2.0695 -4.3549 16 7 -0.6807 -2.0693 -4.1451 17 14 1.3002 -2.6742 -5.9852 18 1 2.7816 -2.5725 -5.9698 19 1 0.9038 -4.0901 -6.1932 20 1 0.7578 -1.8412 -7.0885 21 1 -0.3634 0.4965 0.8998 22 1 -0.3633 0.5310 -0.8798 23 1 -0.3633 -1.0274 -0.0200 24 1 1.6277 1.6785 3.5315 25 1 0.5457 0.3143 3.1611 26 1 0.8846 1.5442 1.9198 27 1 2.4214 -1.2428 3.8194 28 1 4.0094 -0.9893 3.0561 29 1 3.3612 0.2237 4.1859 30 1 4.1657 -0.8664 0.6616 31 1 3.4881 -2.4084 1.2838 32 1 3.6772 -2.0386 -1.3883 33 1 2.1955 -2.7772 -0.7095 34 1 0.3668 -1.9378 -1.5754 35 1 0.2610 -0.2870 -2.2328 36 1 -1.2838 -2.3834 -4.8369 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306547223.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:40 Heat of formation + Delta-G solvation = 15.336171 kcal Electronic energy + Delta-G solvation = -14964.730810 eV Core-core repulsion = 12677.082911 eV Total energy + Delta-G solvation = -2287.647899 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.29483 -36.03425 -32.77353 -31.28868 -29.86628 -27.36055 -26.19314 -25.32175 -22.77608 -22.12282 -20.05209 -18.69032 -16.64435 -15.79453 -15.26878 -14.58117 -14.50005 -14.01219 -13.53323 -13.35744 -12.99678 -12.49484 -12.29727 -11.94545 -11.75111 -11.57902 -11.42989 -10.98992 -10.91801 -10.76110 -10.54857 -10.33792 -10.19205 -10.08271 -9.63352 -9.05487 -8.37923 -8.24426 -7.13187 -5.98817 -3.99209 3.33375 3.40679 3.46292 4.05910 4.46986 4.88154 4.99913 5.22358 5.35466 5.39817 5.44372 5.46498 5.57610 5.66611 5.82818 5.88868 5.90627 5.94143 5.99562 6.10272 6.22261 6.33884 6.59405 6.67101 6.72214 6.77176 7.14460 7.26477 7.30389 7.42459 7.87115 8.12561 8.27157 8.62275 9.09514 9.64888 11.12035 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.058356 B = 0.007458 C = 0.006850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.700234 B = 3753.248565 C = 4086.664818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.079 3.921 3 H 0.082 0.918 4 C 0.065 3.935 5 H 0.043 0.957 6 N -0.535 5.535 7 C 0.021 3.979 8 C 0.025 3.975 9 C -0.123 4.123 10 C 0.059 3.941 11 N -0.521 5.521 12 C 0.184 3.816 13 C -0.504 4.504 14 H 0.062 0.938 15 C 0.053 3.947 16 N -0.901 5.901 17 Si 0.896 3.104 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.284 1.284 21 H 0.045 0.955 22 H 0.070 0.930 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.021 0.979 26 H 0.075 0.925 27 H 0.020 0.980 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.041 0.959 34 H -0.007 1.007 35 H 0.037 0.963 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.363 2.564 12.794 13.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.030 4.030 3 H 0.100 0.900 4 C -0.044 4.044 5 H 0.061 0.939 6 N -0.259 5.259 7 C -0.127 4.127 8 C -0.124 4.124 9 C -0.162 4.162 10 C -0.070 4.070 11 N -0.246 5.246 12 C 0.059 3.941 13 C -0.543 4.543 14 H 0.080 0.920 15 C -0.147 4.147 16 N -0.541 5.541 17 Si 0.724 3.276 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.210 1.210 21 H 0.063 0.937 22 H 0.089 0.911 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.040 0.960 26 H 0.094 0.906 27 H 0.039 0.961 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.011 0.989 35 H 0.055 0.945 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.843 3.176 12.196 13.502 hybrid contribution -0.995 -1.520 -0.068 1.818 sum 3.848 1.656 12.129 12.832 Atomic orbital electron populations 1.22455 0.96533 1.02385 1.01380 1.22385 0.93084 0.99041 0.88466 0.90014 1.23080 0.96469 0.92737 0.92151 0.93861 1.62059 1.27802 1.25413 1.10620 1.22476 0.91997 0.97516 1.00708 1.22369 0.99085 0.97599 0.93301 1.22809 0.97781 0.98824 0.96756 1.22805 0.98050 0.93212 0.92915 1.63821 1.24690 1.22656 1.13419 1.20023 0.88103 0.94951 0.91007 1.21261 0.93674 1.40823 0.98548 0.91970 1.24987 0.94807 0.96127 0.98800 1.69970 1.01942 1.48044 1.34116 0.86462 0.79234 0.78202 0.83656 1.19661 1.21203 1.21043 0.93658 0.91098 0.92443 0.91847 0.95996 0.90619 0.96117 0.91230 0.91801 0.90231 0.92133 0.90865 0.94095 0.98939 0.94502 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 7.61 37.16 0.28 -2.83 16 2 C 0.08 1.49 2.95 -66.72 -0.20 1.29 16 3 H 0.08 1.56 7.74 -51.93 -0.40 1.15 16 4 C 0.06 1.05 2.19 -65.89 -0.14 0.91 16 5 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 6 N -0.53 -7.52 4.84 -240.97 -1.17 -8.69 16 7 C 0.02 0.26 8.61 60.06 0.52 0.78 16 8 C 0.02 0.29 9.31 60.06 0.56 0.85 16 9 C -0.12 -1.98 5.36 -24.60 -0.13 -2.11 16 10 C 0.06 1.17 6.17 -2.30 -0.01 1.15 16 11 N -0.52 -11.65 5.15 -224.78 -1.16 -12.81 16 12 C 0.18 4.84 3.45 -4.97 -0.02 4.83 16 13 C -0.50 -14.44 8.82 -34.44 -0.30 -14.74 16 14 H 0.06 1.78 7.78 -52.49 -0.41 1.37 16 15 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 16 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 17 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H 0.04 0.69 6.14 -51.93 -0.32 0.37 16 22 H 0.07 1.41 6.46 -51.93 -0.34 1.08 16 23 H 0.06 1.14 6.89 -51.93 -0.36 0.78 16 24 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 25 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.08 0.97 5.84 -51.92 -0.30 0.67 16 27 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.07 0.78 7.18 -51.93 -0.37 0.41 16 29 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 30 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.06 0.85 8.11 -51.93 -0.42 0.43 16 32 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.04 0.86 7.62 -51.93 -0.40 0.47 16 34 H -0.01 -0.20 6.81 -51.93 -0.35 -0.55 16 35 H 0.04 1.03 6.05 -51.93 -0.31 0.71 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 275.62 15.07 4.15 4.15 Total: -1.00 -30.00 275.62 -8.06 -38.06 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -6.06 Total: -2.95 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: 0.45 Total: -8.43 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: -1.59 Total: -47.75 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.00 -8.06 -38.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306547223.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.396 kcal (2) G-P(sol) polarization free energy of solvation -30.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds