Wall clock time and date at job start Sun Mar 29 2020 21:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 110.01381 * 2 1 4 4 C 1.54327 * 109.88630 * 121.11347 * 2 1 3 5 5 H 1.08995 * 110.85278 * 23.23598 * 4 2 1 6 6 N 1.46897 * 110.70353 * 260.07340 * 4 2 1 7 7 C 1.46900 * 111.00299 * 62.85941 * 6 4 2 8 8 C 1.46899 * 110.99903 * 186.81298 * 6 4 2 9 9 C 1.55138 * 103.01909 * 141.68899 * 4 2 1 10 10 C 1.54904 * 101.65179 * 324.34703 * 9 4 2 11 11 N 1.47445 * 109.88976 * 238.87720 * 2 1 3 12 12 C 1.46897 * 110.99809 * 3.85724 * 11 2 1 13 13 C 1.50705 * 109.46760 * 169.27809 * 12 11 2 14 14 H 1.07999 * 120.00373 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99763 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99932 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99874 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47448 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46953 * 120.00494 * 17 15 13 20 20 H 1.48504 * 109.47330 * 239.99978 * 17 15 13 21 21 H 1.09001 * 109.47259 * 298.89240 * 1 2 3 22 22 H 1.09000 * 109.46841 * 58.88684 * 1 2 3 23 23 H 1.08998 * 109.47184 * 178.88323 * 1 2 3 24 24 H 1.09001 * 109.47181 * 180.02562 * 7 6 4 25 25 H 1.08999 * 109.47300 * 59.99658 * 7 6 4 26 26 H 1.09008 * 109.46977 * 299.99858 * 7 6 4 27 27 H 1.09003 * 109.47180 * 301.73615 * 8 6 4 28 28 H 1.09002 * 109.47269 * 61.74510 * 8 6 4 29 29 H 1.08998 * 109.46985 * 181.74108 * 8 6 4 30 30 H 1.09005 * 110.98804 * 82.43749 * 9 4 2 31 31 H 1.08995 * 110.98953 * 206.25143 * 9 4 2 32 32 H 1.09004 * 110.37226 * 155.90614 * 10 9 4 33 33 H 1.09000 * 110.37385 * 278.12780 * 10 9 4 34 34 H 1.09001 * 109.47308 * 289.27970 * 12 11 2 35 35 H 1.09000 * 109.47242 * 49.27973 * 12 11 2 36 36 H 0.97004 * 119.99737 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0241 0.0000 4 6 2.0550 -0.7499 1.2425 5 1 1.3068 -1.4470 1.6198 6 7 2.4544 0.1982 2.2910 7 6 1.3039 0.9844 2.7560 8 6 3.1034 -0.4974 3.4103 9 6 3.2891 -1.5135 0.6943 10 6 2.8189 -1.8834 -0.7346 11 7 2.0316 -0.7166 -1.1869 12 6 0.9240 -1.1341 -2.0569 13 6 1.4748 -1.6225 -3.3719 14 1 2.5410 -1.6231 -3.5440 15 6 0.6176 -2.0695 -4.3549 16 7 -0.6807 -2.0693 -4.1451 17 14 1.3002 -2.6742 -5.9852 18 1 2.7816 -2.5725 -5.9698 19 1 0.9038 -4.0901 -6.1932 20 1 0.7578 -1.8412 -7.0885 21 1 -0.3634 0.4965 0.8998 22 1 -0.3633 0.5310 -0.8798 23 1 -0.3633 -1.0274 -0.0200 24 1 1.6277 1.6785 3.5315 25 1 0.5457 0.3143 3.1611 26 1 0.8846 1.5442 1.9198 27 1 2.4214 -1.2428 3.8194 28 1 4.0094 -0.9893 3.0561 29 1 3.3612 0.2237 4.1859 30 1 4.1657 -0.8664 0.6616 31 1 3.4881 -2.4084 1.2838 32 1 3.6772 -2.0386 -1.3883 33 1 2.1955 -2.7772 -0.7095 34 1 0.3668 -1.9378 -1.5754 35 1 0.2610 -0.2870 -2.2328 36 1 -1.2838 -2.3834 -4.8369 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306547223.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:40 Heat of formation + Delta-G solvation = -6.533217 kcal Electronic energy + Delta-G solvation = -14965.679138 eV Core-core repulsion = 12677.082911 eV Total energy + Delta-G solvation = -2288.596227 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.75933 -37.37336 -34.86925 -32.81014 -31.55711 -28.44050 -28.04044 -26.73961 -24.61284 -23.51299 -21.41966 -20.34355 -18.61187 -17.30623 -16.89369 -16.28559 -15.71070 -15.53253 -15.05243 -14.85344 -14.52917 -14.06546 -13.56837 -13.46854 -13.12435 -13.12222 -12.86765 -12.77319 -12.47818 -12.30551 -12.18787 -11.95424 -11.71864 -11.69090 -11.38529 -11.16450 -10.58694 -9.32255 -8.94422 -8.19842 -6.29539 1.40075 1.40866 1.54789 2.40641 2.95641 3.12098 3.35688 3.60428 3.90887 4.07945 4.27066 4.39093 4.41208 4.50350 4.52259 4.57186 4.66896 4.71385 4.81684 4.92496 4.99909 5.04231 5.06032 5.08987 5.13722 5.24077 5.33008 5.38377 5.67259 6.07652 6.11241 6.13987 6.36403 6.65468 6.87547 7.40222 8.91080 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.058356 B = 0.007458 C = 0.006850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.700234 B = 3753.248565 C = 4086.664818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.077 3.923 3 H 0.083 0.917 4 C 0.076 3.924 5 H 0.037 0.963 6 N -0.544 5.544 7 C 0.019 3.981 8 C 0.024 3.976 9 C -0.107 4.107 10 C 0.055 3.945 11 N -0.537 5.537 12 C 0.206 3.794 13 C -0.526 4.526 14 H 0.058 0.942 15 C 0.001 3.999 16 N -0.935 5.935 17 Si 0.969 3.031 18 H -0.265 1.265 19 H -0.278 1.278 20 H -0.277 1.277 21 H 0.078 0.922 22 H 0.046 0.954 23 H 0.035 0.965 24 H 0.086 0.914 25 H 0.025 0.975 26 H 0.065 0.935 27 H 0.024 0.976 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.022 0.978 34 H -0.035 1.035 35 H 0.013 0.987 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.651 2.644 13.830 15.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.032 4.032 3 H 0.101 0.899 4 C -0.034 4.034 5 H 0.055 0.945 6 N -0.268 5.268 7 C -0.129 4.129 8 C -0.124 4.124 9 C -0.145 4.145 10 C -0.074 4.074 11 N -0.262 5.262 12 C 0.079 3.921 13 C -0.564 4.564 14 H 0.076 0.924 15 C -0.197 4.197 16 N -0.575 5.575 17 Si 0.794 3.206 18 H -0.189 1.189 19 H -0.203 1.203 20 H -0.203 1.203 21 H 0.097 0.903 22 H 0.065 0.935 23 H 0.054 0.946 24 H 0.105 0.895 25 H 0.043 0.957 26 H 0.084 0.916 27 H 0.042 0.958 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.041 0.959 34 H -0.018 1.018 35 H 0.031 0.969 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.144 3.266 13.258 14.973 hybrid contribution -1.404 -1.498 -0.329 2.079 sum 4.740 1.768 12.929 13.883 Atomic orbital electron populations 1.22315 0.96490 1.00940 1.01888 1.22419 0.93163 0.98902 0.88693 0.89948 1.22831 0.96144 0.92584 0.91797 0.94471 1.62045 1.28427 1.25023 1.11292 1.22532 0.91696 0.97666 1.00977 1.22457 0.98969 0.98178 0.92812 1.22717 0.97699 1.00035 0.94083 1.22824 0.97150 0.91763 0.95613 1.63695 1.23532 1.23659 1.15280 1.19602 0.88538 0.92825 0.91088 1.21572 0.93592 1.41384 0.99859 0.92398 1.25903 0.95042 0.96034 1.02695 1.70091 1.03273 1.48647 1.35523 0.85340 0.78783 0.77836 0.78691 1.18876 1.20327 1.20305 0.90336 0.93459 0.94631 0.89526 0.95689 0.91579 0.95767 0.90788 0.89773 0.89460 0.89452 0.91294 0.95928 1.01765 0.96884 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.95 7.61 71.98 0.55 -5.41 16 2 C 0.08 2.89 2.95 45.26 0.13 3.02 16 3 H 0.08 3.10 7.74 -2.39 -0.02 3.08 16 4 C 0.08 2.35 2.19 46.10 0.10 2.45 16 5 H 0.04 1.21 7.86 -2.39 -0.02 1.19 16 6 N -0.54 -13.80 4.84 -916.28 -4.43 -18.23 16 7 C 0.02 0.42 8.61 127.69 1.10 1.52 16 8 C 0.02 0.46 9.31 127.69 1.19 1.65 16 9 C -0.11 -3.24 5.36 31.98 0.17 -3.06 16 10 C 0.05 2.19 6.17 86.77 0.54 2.73 16 11 N -0.54 -24.52 5.15 -865.07 -4.45 -28.97 16 12 C 0.21 11.28 3.45 85.56 0.30 11.57 16 13 C -0.53 -30.85 8.82 25.60 0.23 -30.63 16 14 H 0.06 3.37 7.78 -2.91 -0.02 3.35 16 15 C 0.00 0.06 5.46 84.65 0.46 0.52 16 16 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 17 Si 0.97 45.28 29.54 68.60 2.03 47.30 16 18 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 21 H 0.08 2.37 6.14 -2.39 -0.01 2.35 16 22 H 0.05 1.97 6.46 -2.39 -0.02 1.95 16 23 H 0.03 1.46 6.89 -2.39 -0.02 1.45 16 24 H 0.09 1.51 8.10 -2.39 -0.02 1.50 16 25 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.07 1.57 5.84 -2.38 -0.01 1.55 16 27 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.07 1.39 7.18 -2.39 -0.02 1.37 16 29 H 0.08 1.33 8.09 -2.39 -0.02 1.31 16 30 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 31 H 0.09 2.20 8.11 -2.39 -0.02 2.18 16 32 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.02 0.97 7.62 -2.39 -0.02 0.95 16 34 H -0.04 -2.09 6.81 -2.39 -0.02 -2.10 16 35 H 0.01 0.77 6.05 -2.39 -0.01 0.76 16 36 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -65.20 275.62 -0.79 -65.99 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 1.03 Total: 6.47 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: 4.76 Total: -15.63 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -8.60 Total: -104.13 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -65.20 -0.79 -65.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306547223.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.455 kcal (2) G-P(sol) polarization free energy of solvation -65.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds