Wall clock time and date at job start Sun Mar 29 2020 21:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36903 * 119.99847 * 2 1 4 4 H 1.07998 * 120.00416 * 138.05074 * 3 2 1 5 5 C 1.39033 * 119.99730 * 318.04968 * 3 2 1 6 6 N 1.31376 * 120.00226 * 350.55980 * 5 3 2 7 7 Si 1.86797 * 119.99872 * 170.56432 * 5 3 2 8 8 H 1.48499 * 109.47620 * 59.99499 * 7 5 3 9 9 H 1.48500 * 109.47398 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47058 * 299.99803 * 7 5 3 11 11 C 1.34772 * 120.00375 * 179.97438 * 2 1 3 12 12 O 1.21607 * 119.99760 * 5.41541 * 11 2 1 13 13 C 1.47647 * 120.00369 * 185.41909 * 11 2 1 14 14 C 1.39411 * 124.13101 * 169.66998 * 13 11 2 15 15 N 1.30074 * 112.14022 * 180.24012 * 14 13 11 16 16 S 1.55918 * 108.77195 * 359.59998 * 15 14 13 17 17 N 1.31537 * 124.12259 * 349.64318 * 13 11 2 18 18 H 1.09007 * 109.46927 * 182.07525 * 1 2 3 19 19 H 1.09003 * 109.47779 * 302.07398 * 1 2 3 20 20 H 1.09005 * 109.47211 * 62.07881 * 1 2 3 21 21 H 0.96995 * 120.00098 * 180.02562 * 6 5 3 22 22 H 1.08001 * 123.92471 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1856 0.0000 4 1 3.0219 1.3056 0.6252 5 6 1.7214 2.2354 -0.8049 6 7 0.7799 2.0359 -1.6991 7 14 2.4853 3.9294 -0.6150 8 1 3.9444 3.8470 -0.8786 9 1 1.8600 4.8658 -1.5832 10 1 2.2592 4.4222 0.7675 11 6 2.1389 -1.1671 0.0005 12 8 1.5350 -2.2180 -0.0984 13 6 3.6104 -1.1699 0.1213 14 6 4.3753 -2.3151 0.3382 15 7 5.6464 -2.0490 0.4114 16 16 5.8502 -0.5157 0.2154 17 7 4.3598 -0.0922 0.0368 18 1 -0.3633 -1.0271 0.0372 19 1 -0.3635 0.5457 0.8708 20 1 -0.3634 0.4812 -0.9081 21 1 0.4815 2.7681 -2.2609 22 1 3.9602 -3.3071 0.4383 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306568256.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:16 Heat of formation + Delta-G solvation = 39.854861 kcal Electronic energy + Delta-G solvation = -12125.530707 eV Core-core repulsion = 9808.773694 eV Total energy + Delta-G solvation = -2316.757013 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.031 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.25141 -37.91736 -34.86907 -32.78962 -31.52426 -27.28525 -26.00392 -24.54175 -21.66332 -19.27054 -18.69095 -17.59876 -15.76563 -15.12743 -14.92507 -14.54034 -14.24161 -13.67397 -12.85048 -12.00186 -11.65317 -11.32417 -11.18650 -11.06639 -10.83952 -10.63852 -10.41567 -10.37352 -9.79821 -9.25848 -8.72992 -8.51376 -7.55146 -6.37172 -4.13666 1.19542 2.12883 2.33054 2.36695 3.15220 3.18203 3.20691 4.03222 4.21052 4.56113 5.02650 5.33764 5.87493 6.03297 6.11369 6.62051 6.77461 7.18753 7.26389 7.54553 7.81994 8.36327 8.98171 9.30236 9.74045 10.58887 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.030992 B = 0.014349 C = 0.010155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.255636 B = 1950.889666 C = 2756.484397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.409 5.409 3 C -0.312 4.312 4 H 0.113 0.887 5 C 0.045 3.955 6 N -0.864 5.864 7 Si 0.926 3.074 8 H -0.269 1.269 9 H -0.283 1.283 10 H -0.272 1.272 11 C 0.531 3.469 12 O -0.599 6.599 13 C 0.048 3.952 14 C 0.074 3.926 15 N -0.587 5.587 16 S 0.595 5.405 17 N -0.488 5.488 18 H 0.057 0.943 19 H 0.041 0.959 20 H 0.097 0.903 21 H 0.272 0.728 22 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.680 -0.417 2.984 6.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.124 5.124 3 C -0.445 4.445 4 H 0.130 0.870 5 C -0.162 4.162 6 N -0.500 5.500 7 Si 0.752 3.248 8 H -0.194 1.194 9 H -0.209 1.209 10 H -0.197 1.197 11 C 0.316 3.684 12 O -0.486 6.486 13 C -0.127 4.127 14 C -0.123 4.123 15 N -0.426 5.426 16 S 0.639 5.361 17 N -0.334 5.334 18 H 0.076 0.924 19 H 0.060 0.940 20 H 0.115 0.885 21 H 0.082 0.918 22 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 7.084 0.333 2.787 7.620 hybrid contribution -1.164 -0.042 -0.059 1.166 sum 5.920 0.291 2.729 6.525 Atomic orbital electron populations 1.21839 0.80507 1.00740 1.03345 1.43330 1.05644 1.04646 1.58816 1.19949 1.11728 0.88643 1.24132 0.86977 1.25559 0.96230 1.00611 0.93833 1.69756 1.28180 1.33015 1.19092 0.86013 0.79667 0.80880 0.78260 1.19357 1.20876 1.19700 1.17117 0.82845 0.84929 0.83541 1.90649 1.67644 1.31826 1.58464 1.22742 0.98521 0.87012 1.04440 1.23785 0.86168 1.02079 1.00269 1.72174 1.23328 1.22631 1.24447 1.79090 1.12316 0.94126 1.50547 1.73814 1.06978 1.32160 1.20424 0.92442 0.94020 0.88459 0.91778 0.77913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.87 10.00 59.85 0.60 2.47 14 2 N -0.41 -10.53 2.90 -123.34 -0.36 -10.89 14 3 C -0.31 -8.06 7.89 -14.99 -0.12 -8.18 14 4 H 0.11 2.85 5.86 -52.49 -0.31 2.54 14 5 C 0.04 1.13 5.27 -17.45 -0.09 1.04 14 6 N -0.86 -22.71 11.12 55.50 0.62 -22.09 14 7 Si 0.93 19.71 29.56 -169.99 -5.03 14.68 14 8 H -0.27 -5.68 7.11 56.52 0.40 -5.28 14 9 H -0.28 -5.97 7.11 56.52 0.40 -5.57 14 10 H -0.27 -5.66 7.11 56.52 0.40 -5.25 14 11 C 0.53 13.33 7.62 -12.42 -0.09 13.24 14 12 O -0.60 -15.64 16.17 5.27 0.09 -15.56 14 13 C 0.05 1.06 6.60 -83.72 -0.55 0.51 14 14 C 0.07 1.40 11.24 -17.86 -0.20 1.20 14 15 N -0.59 -10.48 11.41 19.45 0.22 -10.26 14 16 S 0.60 10.01 23.69 -107.50 -2.55 7.46 14 17 N -0.49 -10.44 8.02 23.21 0.19 -10.25 14 18 H 0.06 1.31 6.92 -51.93 -0.36 0.95 14 19 H 0.04 0.91 8.14 -51.93 -0.42 0.49 14 20 H 0.10 2.44 5.91 -51.93 -0.31 2.14 14 21 H 0.27 6.74 8.31 -40.82 -0.34 6.40 14 22 H 0.20 3.37 8.06 -52.49 -0.42 2.95 14 LS Contribution 216.01 15.07 3.26 3.26 Total: -1.00 -29.04 216.01 -4.98 -34.01 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: -0.95 Total: -0.63 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: -0.46 Total: 10.27 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.67 Total: -53.49 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.09 Total: -15.56 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.68 kcal Atomic # 16 Polarization: 10.01 SS G_CDS: -2.55 Total: 7.46 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -29.04 -4.98 -34.01 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306568256.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.868 kcal (2) G-P(sol) polarization free energy of solvation -29.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds