Wall clock time and date at job start Sun Mar 29 2020 21:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36903 * 119.99847 * 2 1 4 4 H 1.07998 * 120.00416 * 138.05074 * 3 2 1 5 5 C 1.39033 * 119.99730 * 318.04968 * 3 2 1 6 6 N 1.31376 * 120.00226 * 350.55980 * 5 3 2 7 7 Si 1.86797 * 119.99872 * 170.56432 * 5 3 2 8 8 H 1.48499 * 109.47620 * 59.99499 * 7 5 3 9 9 H 1.48500 * 109.47398 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47058 * 299.99803 * 7 5 3 11 11 C 1.34772 * 120.00375 * 179.97438 * 2 1 3 12 12 O 1.21607 * 119.99760 * 5.41541 * 11 2 1 13 13 C 1.47647 * 120.00369 * 185.41909 * 11 2 1 14 14 C 1.39411 * 124.13101 * 169.66998 * 13 11 2 15 15 N 1.30074 * 112.14022 * 180.24012 * 14 13 11 16 16 S 1.55918 * 108.77195 * 359.59998 * 15 14 13 17 17 N 1.31537 * 124.12259 * 349.64318 * 13 11 2 18 18 H 1.09007 * 109.46927 * 182.07525 * 1 2 3 19 19 H 1.09003 * 109.47779 * 302.07398 * 1 2 3 20 20 H 1.09005 * 109.47211 * 62.07881 * 1 2 3 21 21 H 0.96995 * 120.00098 * 180.02562 * 6 5 3 22 22 H 1.08001 * 123.92471 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1856 0.0000 4 1 3.0219 1.3056 0.6252 5 6 1.7214 2.2354 -0.8049 6 7 0.7799 2.0359 -1.6991 7 14 2.4853 3.9294 -0.6150 8 1 3.9444 3.8470 -0.8786 9 1 1.8600 4.8658 -1.5832 10 1 2.2592 4.4222 0.7675 11 6 2.1389 -1.1671 0.0005 12 8 1.5350 -2.2180 -0.0984 13 6 3.6104 -1.1699 0.1213 14 6 4.3753 -2.3151 0.3382 15 7 5.6464 -2.0490 0.4114 16 16 5.8502 -0.5157 0.2154 17 7 4.3598 -0.0922 0.0368 18 1 -0.3633 -1.0271 0.0372 19 1 -0.3635 0.5457 0.8708 20 1 -0.3634 0.4812 -0.9081 21 1 0.4815 2.7681 -2.2609 22 1 3.9602 -3.3071 0.4383 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306568256.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:16 Heat of formation + Delta-G solvation = 19.780508 kcal Electronic energy + Delta-G solvation = -12126.401196 eV Core-core repulsion = 9808.773694 eV Total energy + Delta-G solvation = -2317.627502 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.031 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.87280 -39.75841 -36.78866 -34.37765 -33.42239 -29.07885 -27.78944 -26.35351 -23.32284 -21.11187 -20.20054 -19.39269 -17.60454 -16.80746 -16.56181 -16.36932 -15.92019 -15.48688 -14.66933 -13.86401 -13.32888 -13.06610 -12.91148 -12.79385 -12.64379 -12.20247 -12.06885 -11.94234 -11.49881 -11.12297 -10.58683 -10.01312 -9.46536 -8.24596 -6.09526 -0.36831 0.62858 0.70950 0.89509 1.46789 1.49776 1.56939 2.27050 2.37733 2.81797 3.13423 3.73954 4.18547 4.43971 4.58331 4.75808 4.89071 5.32982 5.61056 5.64753 5.93191 6.44483 7.07460 7.40308 7.83398 8.72639 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.030992 B = 0.014349 C = 0.010155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.255636 B = 1950.889666 C = 2756.484397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.427 5.427 3 C -0.330 4.330 4 H 0.115 0.885 5 C 0.002 3.998 6 N -0.898 5.898 7 Si 0.987 3.013 8 H -0.263 1.263 9 H -0.282 1.282 10 H -0.263 1.263 11 C 0.524 3.476 12 O -0.619 6.619 13 C 0.020 3.980 14 C 0.078 3.922 15 N -0.590 5.590 16 S 0.705 5.295 17 N -0.527 5.527 18 H 0.058 0.942 19 H 0.052 0.948 20 H 0.082 0.918 21 H 0.272 0.728 22 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.727 0.029 3.497 8.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.143 5.143 3 C -0.460 4.460 4 H 0.132 0.868 5 C -0.201 4.201 6 N -0.536 5.536 7 Si 0.810 3.190 8 H -0.188 1.188 9 H -0.207 1.207 10 H -0.188 1.188 11 C 0.309 3.691 12 O -0.508 6.508 13 C -0.153 4.153 14 C -0.116 4.116 15 N -0.431 5.431 16 S 0.748 5.252 17 N -0.376 5.376 18 H 0.077 0.923 19 H 0.071 0.929 20 H 0.100 0.900 21 H 0.082 0.918 22 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 9.098 0.770 3.309 9.712 hybrid contribution -1.586 -0.253 -0.188 1.617 sum 7.513 0.517 3.121 8.152 Atomic orbital electron populations 1.21745 0.80388 1.00715 1.03036 1.43560 1.06166 1.05088 1.59526 1.20137 1.12238 0.88897 1.24759 0.86834 1.26372 0.96579 1.03837 0.93320 1.69873 1.29645 1.33963 1.20135 0.85077 0.78879 0.76539 0.78463 1.18809 1.20736 1.18810 1.17534 0.84446 0.84466 0.82621 1.90608 1.68787 1.32315 1.59041 1.22397 0.97310 0.88353 1.07214 1.23801 0.86007 1.01970 0.99843 1.72116 1.22729 1.23651 1.24586 1.78649 1.07995 0.92359 1.46238 1.73335 1.09845 1.33677 1.20694 0.92288 0.92941 0.90033 0.91779 0.76246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 4.08 10.00 127.77 1.28 5.36 14 2 N -0.43 -22.29 2.90 -662.39 -1.92 -24.21 14 3 C -0.33 -17.00 7.89 84.09 0.66 -16.34 14 4 H 0.11 5.70 5.86 -2.91 -0.02 5.68 14 5 C 0.00 0.10 5.27 84.95 0.45 0.55 14 6 N -0.90 -47.85 11.12 21.68 0.24 -47.61 14 7 Si 0.99 39.77 29.56 68.60 2.03 41.79 14 8 H -0.26 -10.28 7.11 99.48 0.71 -9.57 14 9 H -0.28 -11.17 7.11 99.48 0.71 -10.47 14 10 H -0.26 -10.15 7.11 99.48 0.71 -9.45 14 11 C 0.52 26.43 7.62 86.73 0.66 27.09 14 12 O -0.62 -32.62 16.17 -4.05 -0.07 -32.69 14 13 C 0.02 0.87 6.60 41.96 0.28 1.15 14 14 C 0.08 2.79 11.24 85.24 0.96 3.75 14 15 N -0.59 -19.15 11.41 -92.39 -1.05 -20.21 14 16 S 0.70 21.22 23.69 -56.49 -1.34 19.88 14 17 N -0.53 -21.53 8.02 -80.49 -0.65 -22.18 14 18 H 0.06 2.76 6.92 -2.38 -0.02 2.74 14 19 H 0.05 2.35 8.14 -2.39 -0.02 2.33 14 20 H 0.08 4.22 5.91 -2.38 -0.01 4.21 14 21 H 0.27 13.68 8.31 -92.71 -0.77 12.91 14 22 H 0.22 6.88 8.06 -2.91 -0.02 6.86 14 Total: -1.00 -61.20 216.01 2.79 -58.41 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: 1.26 Total: 5.25 kcal Atomic # 6 Polarization: 17.27 SS G_CDS: 4.28 Total: 21.55 kcal Atomic # 7 Polarization: -110.82 SS G_CDS: -3.38 Total: -114.20 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -0.07 Total: -32.69 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.79 kcal Atomic # 16 Polarization: 21.22 SS G_CDS: -1.34 Total: 19.88 kcal Total: -61.20 2.79 -58.41 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306568256.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.190 kcal (2) G-P(sol) polarization free energy of solvation -61.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds