Wall clock time and date at job start Sun Mar 29 2020 22:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 110.56494 * 2 1 4 4 O 1.21278 * 119.99671 * 241.22324 * 3 2 1 5 5 N 1.34772 * 119.99890 * 61.22307 * 3 2 1 6 6 C 1.46502 * 119.99996 * 180.02562 * 5 3 2 7 7 C 1.50699 * 109.47210 * 180.02562 * 6 5 3 8 8 H 1.08000 * 120.00046 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00110 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99700 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00176 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47557 * 59.99404 * 11 9 7 13 13 H 1.48503 * 109.47196 * 180.02562 * 11 9 7 14 14 H 1.48510 * 109.46779 * 299.99528 * 11 9 7 15 15 C 1.54506 * 110.51063 * 237.31967 * 2 1 3 16 16 C 1.54480 * 104.06141 * 241.35510 * 15 2 1 17 17 O 1.44422 * 104.80651 * 336.02192 * 16 15 2 18 18 C 1.44426 * 105.27439 * 40.51067 * 17 16 15 19 19 H 1.09003 * 109.47095 * 298.77500 * 1 2 3 20 20 H 1.09000 * 109.46993 * 58.77832 * 1 2 3 21 21 H 1.09003 * 109.46882 * 178.77653 * 1 2 3 22 22 H 0.97000 * 120.00321 * 0.02562 * 5 3 2 23 23 H 1.09003 * 109.46970 * 300.00193 * 6 5 3 24 24 H 1.08993 * 109.47279 * 60.00058 * 6 5 3 25 25 H 0.97000 * 119.99890 * 179.97438 * 10 9 7 26 26 H 1.09002 * 110.50767 * 122.71294 * 15 2 1 27 27 H 1.08996 * 110.63214 * 0.05359 * 15 2 1 28 28 H 1.09008 * 110.37266 * 217.18944 * 16 15 2 29 29 H 1.08998 * 110.37433 * 94.85541 * 16 15 2 30 30 H 1.09005 * 110.36921 * 78.31941 * 18 17 16 31 31 H 1.08996 * 110.37573 * 200.65527 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0594 1.4110 0.0000 4 8 2.7458 1.8011 -0.9206 5 7 1.7700 2.2392 1.0230 6 6 2.2842 3.6111 1.0228 7 6 1.8208 4.3214 2.2685 8 1 1.2047 3.8030 2.9882 9 6 2.1827 5.6335 2.4889 10 7 2.9327 6.2649 1.6122 11 14 1.6090 6.5138 4.0333 12 1 2.1166 5.7957 5.2300 13 1 2.1291 7.9048 4.0324 14 1 0.1245 6.5409 4.0651 15 6 2.0714 -0.7814 -1.2180 16 6 2.8757 -1.9422 -0.5920 17 8 3.2398 -1.4714 0.7239 18 6 2.0713 -0.7812 1.2179 19 1 -0.3633 0.4947 0.9008 20 1 -0.3633 0.5327 -0.8788 21 1 -0.3633 -1.0275 -0.0219 22 1 1.2213 1.9271 1.7595 23 1 3.3738 3.5907 1.0005 24 1 1.9126 4.1382 0.1441 25 1 3.1869 7.1881 1.7671 26 1 2.7220 -0.1471 -1.8202 27 1 1.2506 -1.1678 -1.8221 28 1 3.7689 -2.1468 -1.1824 29 1 2.2564 -2.8360 -0.5172 30 1 1.3285 -1.4970 1.5702 31 1 2.3464 -0.0939 2.0178 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306600094.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:38 Heat of formation + Delta-G solvation = -122.095637 kcal Electronic energy + Delta-G solvation = -14485.565455 eV Core-core repulsion = 11958.406309 eV Total energy + Delta-G solvation = -2527.159146 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.58949 -39.30705 -36.23032 -34.86032 -34.17235 -30.80958 -29.20033 -27.31822 -25.30482 -24.03209 -22.71174 -20.70430 -18.87504 -17.87616 -17.14280 -16.97887 -16.68267 -16.23485 -15.80649 -15.54583 -14.84178 -14.12233 -14.04790 -13.99342 -13.72199 -13.20210 -12.97184 -12.69826 -12.57905 -12.40779 -12.24767 -11.99307 -11.63264 -11.53307 -10.96171 -10.81347 -10.51828 -9.88485 -8.30925 -6.48436 1.42236 1.46710 1.54971 1.67834 2.28842 2.51092 3.00965 3.04152 3.37322 3.71528 3.94342 4.07970 4.23128 4.33026 4.58235 4.65976 4.75264 4.82404 4.88822 4.98355 5.09195 5.18468 5.19606 5.24340 5.45541 5.64449 5.81043 5.82426 6.61922 6.84373 7.20617 7.42612 8.81311 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.052877 B = 0.006899 C = 0.006725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.406420 B = 4057.763070 C = 4162.684459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.112 4.112 3 C 0.505 3.495 4 O -0.601 6.601 5 N -0.703 5.703 6 C 0.267 3.733 7 C -0.558 4.558 8 H 0.086 0.914 9 C 0.003 3.997 10 N -0.932 5.932 11 Si 0.987 3.013 12 H -0.262 1.262 13 H -0.285 1.285 14 H -0.260 1.260 15 C -0.145 4.145 16 C 0.046 3.954 17 O -0.404 6.404 18 C 0.058 3.942 19 H 0.072 0.928 20 H 0.056 0.944 21 H 0.106 0.894 22 H 0.407 0.593 23 H -0.017 1.017 24 H -0.013 1.013 25 H 0.269 0.731 26 H 0.061 0.939 27 H 0.113 0.887 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.477 -16.070 0.283 17.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.115 4.115 3 C 0.292 3.708 4 O -0.483 6.483 5 N -0.352 5.352 6 C 0.144 3.856 7 C -0.596 4.596 8 H 0.104 0.896 9 C -0.196 4.196 10 N -0.571 5.571 11 Si 0.809 3.191 12 H -0.186 1.186 13 H -0.211 1.211 14 H -0.184 1.184 15 C -0.183 4.183 16 C -0.030 4.030 17 O -0.323 6.323 18 C -0.019 4.019 19 H 0.091 0.909 20 H 0.075 0.925 21 H 0.125 0.875 22 H 0.243 0.757 23 H 0.001 0.999 24 H 0.005 0.995 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.131 0.869 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.131 0.869 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.704 -15.635 -0.280 17.013 hybrid contribution -0.041 1.072 0.443 1.160 sum -6.745 -14.563 0.163 16.050 Atomic orbital electron populations 1.21830 0.88591 1.05004 1.03196 1.22242 0.99853 0.90411 0.99041 1.21202 0.79552 0.88577 0.81460 1.90594 1.41440 1.78366 1.37936 1.46145 1.52442 1.13394 1.23194 1.18542 0.92428 0.78262 0.96375 1.21588 1.33973 0.98031 1.05986 0.89642 1.26107 0.94503 0.98168 1.00860 1.70141 1.36842 1.12360 1.37720 0.85179 0.79092 0.76865 0.77915 1.18631 1.21082 1.18417 1.23075 1.01504 0.96874 0.96817 1.23627 1.00237 0.96396 0.82744 1.89115 1.36685 1.73956 1.32568 1.23682 0.88521 0.95322 0.94339 0.90925 0.92514 0.87541 0.75659 0.99892 0.99462 0.92199 0.91978 0.86897 0.88839 0.88591 0.86905 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 8.20 71.98 0.59 -1.96 16 2 C -0.11 -3.12 0.88 -51.91 -0.05 -3.17 16 3 C 0.50 21.21 6.49 87.66 0.57 21.78 16 4 O -0.60 -31.42 15.29 -3.02 -0.05 -31.47 16 5 N -0.70 -30.61 5.18 -466.80 -2.42 -33.03 16 6 C 0.27 15.05 5.43 85.63 0.46 15.51 16 7 C -0.56 -30.72 9.28 25.60 0.24 -30.49 16 8 H 0.09 4.20 7.60 -2.91 -0.02 4.18 16 9 C 0.00 0.18 5.46 84.65 0.46 0.64 16 10 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 11 Si 0.99 42.43 29.54 68.60 2.03 44.46 16 12 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 13 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 14 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 15 C -0.14 -3.70 6.31 31.61 0.20 -3.50 16 16 C 0.05 1.02 7.63 72.49 0.55 1.57 16 17 O -0.40 -11.93 11.65 -148.98 -1.74 -13.67 16 18 C 0.06 1.45 6.70 72.49 0.49 1.93 16 19 H 0.07 1.36 7.78 -2.39 -0.02 1.34 16 20 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 21 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.41 14.55 7.72 -92.71 -0.72 13.84 16 23 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 24 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 25 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 26 H 0.06 2.09 6.51 -2.39 -0.02 2.07 16 27 H 0.11 2.07 7.74 -2.39 -0.02 2.06 16 28 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 29 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.11 1.84 7.87 -2.38 -0.02 1.82 16 31 H 0.08 2.26 7.44 -2.39 -0.02 2.25 16 Total: -1.00 -75.31 262.46 2.03 -73.27 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.41 Total: 14.87 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 3.52 Total: 2.31 kcal Atomic # 7 Polarization: -87.64 SS G_CDS: -2.13 Total: -89.78 kcal Atomic # 8 Polarization: -43.35 SS G_CDS: -1.78 Total: -45.13 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -75.31 2.03 -73.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306600094.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.823 kcal (2) G-P(sol) polarization free energy of solvation -75.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds