Wall clock time and date at job start Sun Mar 29 2020 22:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99978 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99826 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99729 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 359.72747 * 7 2 1 9 9 C 1.50706 * 120.00436 * 180.02562 * 7 2 1 10 10 N 1.46493 * 109.47128 * 179.72498 * 9 7 2 11 11 C 1.34778 * 119.99700 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00178 * 0.02562 * 11 10 9 13 13 C 1.50709 * 120.00069 * 180.02562 * 11 10 9 14 14 O 1.42902 * 110.01557 * 33.61028 * 13 11 10 15 15 C 1.54265 * 110.02806 * 272.16910 * 13 11 10 16 16 C 1.54896 * 104.19321 * 217.10310 * 15 13 11 17 17 C 1.54892 * 102.74622 * 37.94075 * 16 15 13 18 18 C 1.53867 * 110.03105 * 154.99942 * 13 11 10 19 19 H 0.96995 * 120.00207 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 21 21 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 22 22 H 0.97005 * 120.00530 * 0.02562 * 10 9 7 23 23 H 0.96702 * 113.99400 * 300.70130 * 14 13 11 24 24 H 1.08998 * 110.49106 * 335.77942 * 15 13 11 25 25 H 1.09003 * 110.48834 * 98.42639 * 15 13 11 26 26 H 1.09004 * 110.75423 * 279.63291 * 16 15 13 27 27 H 1.08995 * 110.75600 * 156.25859 * 16 15 13 28 28 H 1.08996 * 110.48647 * 203.37429 * 17 16 15 29 29 H 1.09005 * 110.48202 * 80.74115 * 17 16 15 30 30 H 1.09002 * 110.03649 * 238.56762 * 18 13 11 31 31 H 1.09001 * 110.03740 * 359.97438 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0054 9 6 3.5117 -1.1939 0.0011 10 7 4.0000 -2.5751 0.0082 11 6 5.3251 -2.8213 0.0095 12 8 6.1132 -1.8994 0.0051 13 6 5.8275 -4.2421 0.0162 14 8 4.9364 -5.0796 -0.7231 15 6 5.9519 -4.7516 1.4670 16 6 7.2258 -5.6327 1.4522 17 6 8.1711 -4.8508 0.5066 18 6 7.2385 -4.3051 -0.5944 19 1 -0.4850 0.8400 -0.0004 20 1 3.8752 -0.6845 -0.8913 21 1 3.8746 -0.6756 0.8886 22 1 3.3697 -3.3124 0.0113 23 1 4.0322 -5.0909 -0.3804 24 1 6.0742 -3.9158 2.1558 25 1 5.0798 -5.3465 1.7385 26 1 7.0070 -6.6213 1.0486 27 1 7.6547 -5.7084 2.4513 28 1 8.9186 -5.5180 0.0774 29 1 8.6519 -4.0310 1.0404 30 1 7.2438 -4.9751 -1.4541 31 1 7.5597 -3.3081 -0.8960 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306600952.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:06 Heat of formation + Delta-G solvation = -103.136150 kcal Electronic energy + Delta-G solvation = -14472.894339 eV Core-core repulsion = 11946.557337 eV Total energy + Delta-G solvation = -2526.337001 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.11995 -37.33417 -35.24583 -34.16506 -32.34320 -28.86510 -28.70706 -27.36237 -22.83985 -21.18210 -20.82663 -19.42337 -18.34007 -16.55906 -16.01082 -15.82402 -14.98188 -14.57797 -14.36963 -13.68770 -13.28503 -13.00693 -12.65360 -12.36853 -12.23238 -11.70827 -11.39164 -11.17383 -11.12906 -11.02683 -10.80787 -10.56728 -10.40810 -10.00344 -9.54030 -8.99161 -8.82230 -8.24817 -6.25186 -4.28003 3.02270 3.24162 3.30752 3.38728 3.76727 4.27340 4.30047 4.49868 4.56256 4.93635 5.10071 5.27760 5.41740 5.47233 5.57477 5.61807 5.76591 5.86052 5.98886 6.05274 6.28491 6.32727 6.73537 7.01042 7.10595 7.32101 7.53566 8.06672 8.42969 8.68138 8.80389 9.34387 10.86657 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.055738 B = 0.007290 C = 0.006863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.233438 B = 3840.143108 C = 4078.614753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.219 3.781 10 N -0.700 5.700 11 C 0.482 3.518 12 O -0.550 6.550 13 C 0.114 3.886 14 O -0.548 6.548 15 C -0.143 4.143 16 C -0.119 4.119 17 C -0.122 4.122 18 C -0.106 4.106 19 H 0.268 0.732 20 H 0.022 0.978 21 H 0.026 0.974 22 H 0.393 0.607 23 H 0.377 0.623 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.570 -10.323 2.125 15.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.583 4.583 8 H 0.098 0.902 9 C 0.097 3.903 10 N -0.349 5.349 11 C 0.266 3.734 12 O -0.429 6.429 13 C 0.070 3.930 14 O -0.355 6.355 15 C -0.181 4.181 16 C -0.156 4.156 17 C -0.159 4.159 18 C -0.144 4.144 19 H 0.078 0.922 20 H 0.040 0.960 21 H 0.044 0.956 22 H 0.227 0.773 23 H 0.225 0.775 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.465 -9.616 1.767 15.842 hybrid contribution -0.682 0.720 0.323 1.043 sum 11.784 -8.897 2.091 14.912 Atomic orbital electron populations 1.69875 1.06198 1.27492 1.49251 1.24790 0.94799 0.99181 0.93792 0.86818 0.80540 0.83231 0.79112 1.19787 1.20817 1.18558 1.21073 0.88408 0.95277 1.53557 0.90218 1.19531 0.95381 0.78494 0.96864 1.46178 1.05693 1.11103 1.71915 1.21171 0.83453 0.91543 0.77237 1.90638 1.55438 1.45854 1.50939 1.22166 0.91887 0.86474 0.92427 1.86614 1.23365 1.68068 1.57405 1.22998 0.99646 1.00213 0.95264 1.22455 0.94918 0.98614 0.99651 1.22355 0.97517 0.99539 0.96495 1.22092 0.90047 1.03581 0.98697 0.92199 0.96043 0.95617 0.77311 0.77473 0.90263 0.90310 0.91047 0.91317 0.91292 0.91169 0.90253 0.89015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.33 13.96 55.43 0.77 -25.56 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.26 -6.35 6.53 56.52 0.37 -5.98 16 7 C -0.55 -14.89 9.83 -34.44 -0.34 -15.23 16 8 H 0.08 2.25 7.84 -52.49 -0.41 1.83 16 9 C 0.22 5.41 4.50 -5.19 -0.02 5.39 16 10 N -0.70 -14.20 5.46 -61.47 -0.34 -14.53 16 11 C 0.48 9.38 6.62 -10.98 -0.07 9.31 16 12 O -0.55 -12.58 15.56 5.56 0.09 -12.49 16 13 C 0.11 1.71 1.28 -90.65 -0.12 1.60 16 14 O -0.55 -7.68 12.79 -35.23 -0.45 -8.13 16 15 C -0.14 -1.79 6.08 -25.07 -0.15 -1.94 16 16 C -0.12 -1.25 6.91 -24.73 -0.17 -1.42 16 17 C -0.12 -1.37 6.83 -25.07 -0.17 -1.54 16 18 C -0.11 -1.49 6.14 -25.62 -0.16 -1.65 16 19 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 20 H 0.02 0.56 7.58 -51.93 -0.39 0.16 16 21 H 0.03 0.67 7.18 -51.93 -0.37 0.29 16 22 H 0.39 6.84 6.81 -40.82 -0.28 6.57 16 23 H 0.38 4.14 7.59 45.56 0.35 4.49 16 24 H 0.08 1.08 7.85 -51.93 -0.41 0.67 16 25 H 0.08 0.85 8.06 -51.93 -0.42 0.43 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 1.05 7.95 -51.93 -0.41 0.64 16 31 H 0.09 1.46 6.71 -51.93 -0.35 1.11 16 LS Contribution 258.11 15.07 3.89 3.89 Total: -1.00 -32.03 258.11 -5.56 -37.60 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -3.56 Total: 5.86 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -1.30 Total: -3.37 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.44 Total: -40.09 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.36 Total: -20.62 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -32.03 -5.56 -37.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306600952.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.541 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds