Wall clock time and date at job start Sun Mar 29 2020 22:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99978 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99826 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99729 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 359.72747 * 7 2 1 9 9 C 1.50706 * 120.00436 * 180.02562 * 7 2 1 10 10 N 1.46493 * 109.47128 * 179.72498 * 9 7 2 11 11 C 1.34778 * 119.99700 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00178 * 0.02562 * 11 10 9 13 13 C 1.50709 * 120.00069 * 180.02562 * 11 10 9 14 14 O 1.42902 * 110.01557 * 33.61028 * 13 11 10 15 15 C 1.54265 * 110.02806 * 272.16910 * 13 11 10 16 16 C 1.54896 * 104.19321 * 217.10310 * 15 13 11 17 17 C 1.54892 * 102.74622 * 37.94075 * 16 15 13 18 18 C 1.53867 * 110.03105 * 154.99942 * 13 11 10 19 19 H 0.96995 * 120.00207 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 21 21 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 22 22 H 0.97005 * 120.00530 * 0.02562 * 10 9 7 23 23 H 0.96702 * 113.99400 * 300.70130 * 14 13 11 24 24 H 1.08998 * 110.49106 * 335.77942 * 15 13 11 25 25 H 1.09003 * 110.48834 * 98.42639 * 15 13 11 26 26 H 1.09004 * 110.75423 * 279.63291 * 16 15 13 27 27 H 1.08995 * 110.75600 * 156.25859 * 16 15 13 28 28 H 1.08996 * 110.48647 * 203.37429 * 17 16 15 29 29 H 1.09005 * 110.48202 * 80.74115 * 17 16 15 30 30 H 1.09002 * 110.03649 * 238.56762 * 18 13 11 31 31 H 1.09001 * 110.03740 * 359.97438 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0054 9 6 3.5117 -1.1939 0.0011 10 7 4.0000 -2.5751 0.0082 11 6 5.3251 -2.8213 0.0095 12 8 6.1132 -1.8994 0.0051 13 6 5.8275 -4.2421 0.0162 14 8 4.9364 -5.0796 -0.7231 15 6 5.9519 -4.7516 1.4670 16 6 7.2258 -5.6327 1.4522 17 6 8.1711 -4.8508 0.5066 18 6 7.2385 -4.3051 -0.5944 19 1 -0.4850 0.8400 -0.0004 20 1 3.8752 -0.6845 -0.8913 21 1 3.8746 -0.6756 0.8886 22 1 3.3697 -3.3124 0.0113 23 1 4.0322 -5.0909 -0.3804 24 1 6.0742 -3.9158 2.1558 25 1 5.0798 -5.3465 1.7385 26 1 7.0070 -6.6213 1.0486 27 1 7.6547 -5.7084 2.4513 28 1 8.9186 -5.5180 0.0774 29 1 8.6519 -4.0310 1.0404 30 1 7.2438 -4.9751 -1.4541 31 1 7.5597 -3.3081 -0.8960 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306600952.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:06 Heat of formation + Delta-G solvation = -128.413383 kcal Electronic energy + Delta-G solvation = -14473.990442 eV Core-core repulsion = 11946.557337 eV Total energy + Delta-G solvation = -2527.433104 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.49955 -38.70168 -36.61196 -35.73909 -34.37421 -30.46315 -29.78611 -28.80292 -24.65602 -22.65824 -21.86568 -20.84559 -19.81440 -18.49937 -17.36223 -17.04359 -16.41740 -16.26985 -16.03023 -15.22310 -14.65864 -14.46969 -14.19243 -14.08836 -13.54291 -13.10160 -12.90025 -12.74205 -12.52377 -12.05272 -12.03913 -11.97045 -11.70280 -11.58729 -11.41785 -10.95503 -10.49652 -10.05607 -8.43213 -6.50750 1.29926 1.32433 1.44163 1.49995 2.22799 2.26339 2.91839 3.16094 3.42382 3.52857 3.78462 4.25287 4.40606 4.43697 4.54445 4.71222 4.72416 4.83713 4.95412 5.01833 5.06423 5.17275 5.18261 5.25729 5.40119 5.44108 6.02142 6.43003 6.52580 6.77158 7.08965 7.25006 8.71312 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.055738 B = 0.007290 C = 0.006863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.233438 B = 3840.143108 C = 4078.614753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.028 3.972 3 Si 0.936 3.064 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.062 0.938 9 C 0.230 3.770 10 N -0.699 5.699 11 C 0.478 3.522 12 O -0.587 6.587 13 C 0.123 3.877 14 O -0.550 6.550 15 C -0.143 4.143 16 C -0.111 4.111 17 C -0.118 4.118 18 C -0.111 4.111 19 H 0.273 0.727 20 H 0.009 0.991 21 H 0.015 0.985 22 H 0.407 0.593 23 H 0.390 0.610 24 H 0.065 0.935 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.734 -11.413 2.538 17.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.172 4.172 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.186 1.186 7 C -0.586 4.586 8 H 0.080 0.920 9 C 0.107 3.893 10 N -0.349 5.349 11 C 0.264 3.736 12 O -0.468 6.468 13 C 0.078 3.922 14 O -0.358 6.358 15 C -0.181 4.181 16 C -0.148 4.148 17 C -0.156 4.156 18 C -0.149 4.149 19 H 0.082 0.918 20 H 0.027 0.973 21 H 0.033 0.967 22 H 0.243 0.757 23 H 0.240 0.760 24 H 0.084 0.916 25 H 0.117 0.883 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.111 0.889 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 13.617 -10.744 2.182 17.482 hybrid contribution -1.078 1.002 0.169 1.481 sum 12.539 -9.742 2.351 16.052 Atomic orbital electron populations 1.69969 1.07609 1.28685 1.50433 1.25574 0.95543 1.02596 0.93518 0.85887 0.79261 0.79488 0.79443 1.19096 1.19557 1.18586 1.21263 0.89703 0.94751 1.52908 0.91969 1.19141 0.93644 0.80868 0.95677 1.46026 1.06705 1.09877 1.72317 1.22133 0.82466 0.93463 0.75529 1.90613 1.56206 1.47670 1.52306 1.22165 0.92123 0.83347 0.94524 1.86607 1.24303 1.67213 1.57681 1.23041 1.01902 1.00378 0.92774 1.22470 0.93309 0.98445 1.00605 1.22373 0.97600 0.99877 0.95727 1.22157 0.90065 1.02579 1.00123 0.91752 0.97269 0.96743 0.75700 0.75983 0.91647 0.88333 0.89662 0.89402 0.88916 0.91738 0.89449 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.15 13.96 21.45 0.30 -54.85 16 2 C 0.03 1.60 5.47 84.65 0.46 2.07 16 3 Si 0.94 44.08 27.47 68.60 1.88 45.96 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.26 -12.25 6.53 99.48 0.65 -11.60 16 7 C -0.55 -30.19 9.83 25.60 0.25 -29.94 16 8 H 0.06 3.56 7.84 -2.91 -0.02 3.54 16 9 C 0.23 11.40 4.50 85.64 0.39 11.79 16 10 N -0.70 -28.19 5.46 -466.78 -2.55 -30.74 16 11 C 0.48 18.43 6.62 87.66 0.58 19.01 16 12 O -0.59 -27.08 15.56 -3.03 -0.05 -27.13 16 13 C 0.12 3.48 1.28 -10.82 -0.01 3.47 16 14 O -0.55 -14.23 12.79 -148.98 -1.91 -16.14 16 15 C -0.14 -3.23 6.08 31.67 0.19 -3.03 16 16 C -0.11 -1.94 6.91 31.89 0.22 -1.72 16 17 C -0.12 -2.36 6.83 31.67 0.22 -2.14 16 18 C -0.11 -2.97 6.14 31.32 0.19 -2.77 16 19 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 20 H 0.01 0.49 7.58 -2.39 -0.02 0.47 16 21 H 0.01 0.76 7.18 -2.39 -0.02 0.74 16 22 H 0.41 13.93 6.81 -92.70 -0.63 13.29 16 23 H 0.39 7.72 7.59 -74.06 -0.56 7.16 16 24 H 0.06 1.67 7.85 -2.39 -0.02 1.65 16 25 H 0.10 1.82 8.06 -2.39 -0.02 1.81 16 26 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.09 2.15 7.95 -2.39 -0.02 2.14 16 31 H 0.07 2.11 6.71 -2.39 -0.02 2.10 16 Total: -1.00 -68.28 258.11 0.06 -68.22 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -0.11 Total: 17.95 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 2.49 Total: -3.28 kcal Atomic # 7 Polarization: -83.34 SS G_CDS: -2.25 Total: -85.59 kcal Atomic # 8 Polarization: -41.32 SS G_CDS: -1.95 Total: -43.27 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.88 Total: 45.96 kcal Total: -68.28 0.06 -68.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306600952.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.190 kcal (2) G-P(sol) polarization free energy of solvation -68.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds