Wall clock time and date at job start Sun Mar 29 2020 21:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86808 * 119.99673 * 2 1 4 4 H 1.48500 * 109.46822 * 89.99949 * 3 2 1 5 5 H 1.48504 * 109.47007 * 209.99357 * 3 2 1 6 6 H 1.48495 * 109.47117 * 329.99927 * 3 2 1 7 7 C 1.38943 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00340 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99911 * 0.02562 * 7 2 1 10 10 C 1.34783 * 120.00360 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99717 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00265 * 179.97438 * 10 9 7 13 13 H 1.08996 * 112.84566 * 42.63033 * 12 10 9 14 14 C 1.53771 * 113.61407 * 173.83133 * 12 10 9 15 15 C 1.54047 * 86.98912 * 89.16105 * 14 12 10 16 16 C 1.53777 * 113.61312 * 271.43948 * 12 10 9 17 17 H 1.08996 * 113.61877 * 156.33400 * 16 12 10 18 18 C 1.50703 * 113.61622 * 25.42933 * 16 12 10 19 19 O 1.20828 * 120.00347 * 264.53003 * 18 16 12 20 20 O 1.34232 * 119.99787 * 84.53094 * 18 16 12 21 21 H 0.97003 * 119.99970 * 179.97438 * 1 2 3 22 22 H 0.97001 * 119.99869 * 359.97438 * 9 7 2 23 23 H 1.09001 * 113.61449 * 203.66699 * 14 12 10 24 24 H 1.09002 * 113.61810 * 334.56450 * 14 12 10 25 25 H 1.09002 * 113.61467 * 270.88358 * 15 14 12 26 26 H 1.08999 * 113.69877 * 139.98388 * 15 14 12 27 27 H 0.96706 * 117.00025 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4954 2.0465 1.4001 5 1 3.5456 1.4403 -0.6999 6 1 1.4454 2.6527 -0.7000 7 6 2.0088 -1.2032 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2439 -4.8630 0.0022 13 1 0.3926 -4.8604 -0.6785 14 6 2.1492 -6.0969 -0.1481 15 6 2.2622 -6.1001 1.3883 16 6 0.9048 -5.3778 1.4110 17 1 0.0505 -6.0543 1.4347 18 6 0.8185 -4.2874 2.4477 19 8 1.7777 -4.0311 3.1362 20 8 -0.3241 -3.6009 2.6061 21 1 -0.4850 -0.8401 -0.0004 22 1 0.3534 -2.3906 0.0005 23 1 1.6345 -6.9697 -0.5499 24 1 3.0908 -5.8884 -0.6561 25 1 3.0855 -5.4944 1.7668 26 1 2.2335 -7.0973 1.8275 27 1 -0.3312 -2.9106 3.2834 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306623780.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:47 Heat of formation + Delta-G solvation = -113.141130 kcal Electronic energy + Delta-G solvation = -14659.360577 eV Core-core repulsion = 11996.756633 eV Total energy + Delta-G solvation = -2662.603944 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.62267 -38.66392 -36.67402 -35.55978 -34.21931 -31.08870 -27.13171 -26.61621 -24.17670 -21.90765 -20.75446 -18.53374 -17.87058 -17.82606 -16.88692 -15.87341 -15.39570 -14.86082 -14.30997 -13.75540 -13.68486 -13.23337 -12.56672 -12.30915 -11.84778 -11.24776 -11.16207 -11.03276 -10.90763 -10.59274 -10.26738 -10.20274 -9.97507 -9.86517 -9.56239 -8.48367 -8.05770 -6.77469 -3.90196 2.58238 3.27524 3.34241 3.38067 3.54232 3.69263 4.22220 4.55745 4.68078 4.82788 4.97959 5.25215 5.34353 5.52212 5.77270 5.86875 5.93983 6.03791 6.25559 6.32639 6.65258 6.90893 7.78106 8.06530 8.28626 8.56703 8.76365 9.44511 9.83873 10.65605 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.038677 B = 0.010646 C = 0.009579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.761573 B = 2629.458989 C = 2922.478425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C -0.008 4.008 3 Si 1.093 2.907 4 H -0.284 1.284 5 H -0.283 1.283 6 H -0.280 1.280 7 C -0.382 4.382 8 H 0.099 0.901 9 N -0.565 5.565 10 C 0.449 3.551 11 O -0.577 6.577 12 C -0.110 4.110 13 H 0.094 0.906 14 C -0.119 4.119 15 C -0.114 4.114 16 C -0.100 4.100 17 H 0.124 0.876 18 C 0.484 3.516 19 O -0.503 6.503 20 O -0.516 6.516 21 H 0.262 0.738 22 H 0.377 0.623 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.103 0.897 26 H 0.072 0.928 27 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.690 -9.366 1.868 9.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.210 4.210 3 Si 0.919 3.081 4 H -0.211 1.211 5 H -0.209 1.209 6 H -0.206 1.206 7 C -0.511 4.511 8 H 0.117 0.883 9 N -0.202 5.202 10 C 0.234 3.766 11 O -0.461 6.461 12 C -0.132 4.132 13 H 0.112 0.888 14 C -0.157 4.157 15 C -0.152 4.152 16 C -0.120 4.120 17 H 0.141 0.859 18 C 0.326 3.674 19 O -0.390 6.390 20 O -0.327 6.327 21 H 0.074 0.926 22 H 0.211 0.789 23 H 0.103 0.897 24 H 0.107 0.893 25 H 0.122 0.878 26 H 0.091 0.909 27 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -1.773 -7.904 1.751 8.288 hybrid contribution -0.608 -1.201 0.487 1.432 sum -2.381 -9.105 2.239 9.674 Atomic orbital electron populations 1.70861 1.06471 1.29539 1.46748 1.26520 0.96549 1.02614 0.95359 0.83100 0.74414 0.73372 0.77194 1.21092 1.20891 1.20580 1.20595 0.94724 0.83807 1.51961 0.88296 1.41942 1.08288 1.05445 1.64513 1.19182 0.88049 0.83997 0.85354 1.90522 1.13519 1.86757 1.55318 1.22384 1.00036 0.95938 0.94877 0.88754 1.22726 1.00840 0.95519 0.96592 1.22947 0.95507 0.99971 0.96732 1.22555 1.01746 0.95117 0.92556 0.85853 1.23205 0.79840 0.81671 0.82700 1.90700 1.37475 1.65703 1.45111 1.84486 1.39041 1.49682 1.59540 0.92603 0.78915 0.89707 0.89309 0.87826 0.90941 0.73323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.14 13.68 55.49 0.76 -24.38 15 2 C -0.01 -0.21 5.50 -17.47 -0.10 -0.30 15 3 Si 1.09 24.66 29.92 -169.99 -5.09 19.57 15 4 H -0.28 -6.23 7.11 56.52 0.40 -5.82 15 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 6 H -0.28 -6.19 7.11 56.52 0.40 -5.78 15 7 C -0.38 -10.93 9.68 -14.94 -0.14 -11.08 15 8 H 0.10 3.03 7.16 -52.49 -0.38 2.65 15 9 N -0.57 -14.54 5.16 -10.96 -0.06 -14.60 15 10 C 0.45 10.88 5.89 -10.98 -0.06 10.81 15 11 O -0.58 -16.14 15.10 5.55 0.08 -16.06 15 12 C -0.11 -1.96 4.25 -90.97 -0.39 -2.34 15 13 H 0.09 1.44 8.14 -51.93 -0.42 1.02 15 14 C -0.12 -1.79 7.45 -25.78 -0.19 -1.98 15 15 C -0.11 -1.79 7.05 -25.78 -0.18 -1.97 15 16 C -0.10 -1.58 4.21 -90.96 -0.38 -1.96 15 17 H 0.12 1.45 8.14 -51.93 -0.42 1.03 15 18 C 0.48 9.12 6.53 36.01 0.24 9.35 15 19 O -0.50 -11.29 16.65 -18.75 -0.31 -11.60 15 20 O -0.52 -8.56 13.42 -39.26 -0.53 -9.08 15 21 H 0.26 7.12 6.78 -40.82 -0.28 6.84 15 22 H 0.38 9.10 6.73 -40.82 -0.27 8.83 15 23 H 0.08 0.95 8.14 -51.93 -0.42 0.53 15 24 H 0.09 1.51 7.52 -51.93 -0.39 1.12 15 25 H 0.10 2.03 7.11 -51.93 -0.37 1.66 15 26 H 0.07 0.89 8.14 -51.93 -0.42 0.46 15 27 H 0.41 5.62 9.10 45.56 0.41 6.03 15 LS Contribution 242.80 15.07 3.66 3.66 Total: -1.00 -34.73 242.80 -4.45 -39.19 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -1.76 Total: 12.76 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -1.21 Total: 0.54 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.70 Total: -38.97 kcal Atomic # 8 Polarization: -35.99 SS G_CDS: -0.76 Total: -36.74 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -5.09 Total: 19.57 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -34.73 -4.45 -39.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306623780.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.953 kcal (2) G-P(sol) polarization free energy of solvation -34.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds