Wall clock time and date at job start Sun Mar 29 2020 21:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86808 * 119.99673 * 2 1 4 4 H 1.48500 * 109.46822 * 89.99949 * 3 2 1 5 5 H 1.48504 * 109.47007 * 209.99357 * 3 2 1 6 6 H 1.48495 * 109.47117 * 329.99927 * 3 2 1 7 7 C 1.38943 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00340 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99911 * 0.02562 * 7 2 1 10 10 C 1.34783 * 120.00360 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99717 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00265 * 179.97438 * 10 9 7 13 13 H 1.08996 * 112.84566 * 42.63033 * 12 10 9 14 14 C 1.53771 * 113.61407 * 173.83133 * 12 10 9 15 15 C 1.54047 * 86.98912 * 89.16105 * 14 12 10 16 16 C 1.53777 * 113.61312 * 271.43948 * 12 10 9 17 17 H 1.08996 * 113.61877 * 156.33400 * 16 12 10 18 18 C 1.50703 * 113.61622 * 25.42933 * 16 12 10 19 19 O 1.20828 * 120.00347 * 264.53003 * 18 16 12 20 20 O 1.34232 * 119.99787 * 84.53094 * 18 16 12 21 21 H 0.97003 * 119.99970 * 179.97438 * 1 2 3 22 22 H 0.97001 * 119.99869 * 359.97438 * 9 7 2 23 23 H 1.09001 * 113.61449 * 203.66699 * 14 12 10 24 24 H 1.09002 * 113.61810 * 334.56450 * 14 12 10 25 25 H 1.09002 * 113.61467 * 270.88358 * 15 14 12 26 26 H 1.08999 * 113.69877 * 139.98388 * 15 14 12 27 27 H 0.96706 * 117.00025 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4954 2.0465 1.4001 5 1 3.5456 1.4403 -0.6999 6 1 1.4454 2.6527 -0.7000 7 6 2.0088 -1.2032 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2439 -4.8630 0.0022 13 1 0.3926 -4.8604 -0.6785 14 6 2.1492 -6.0969 -0.1481 15 6 2.2622 -6.1001 1.3883 16 6 0.9048 -5.3778 1.4110 17 1 0.0505 -6.0543 1.4347 18 6 0.8185 -4.2874 2.4477 19 8 1.7777 -4.0311 3.1362 20 8 -0.3241 -3.6009 2.6061 21 1 -0.4850 -0.8401 -0.0004 22 1 0.3534 -2.3906 0.0005 23 1 1.6345 -6.9697 -0.5499 24 1 3.0908 -5.8884 -0.6561 25 1 3.0855 -5.4944 1.7668 26 1 2.2335 -7.0973 1.8275 27 1 -0.3312 -2.9106 3.2834 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306623780.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:46 Heat of formation + Delta-G solvation = -140.158984 kcal Electronic energy + Delta-G solvation = -14660.532159 eV Core-core repulsion = 11996.756633 eV Total energy + Delta-G solvation = -2663.775526 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.11319 -40.33429 -38.30898 -37.05611 -36.30203 -33.17173 -28.43146 -28.26787 -26.07587 -23.30883 -22.41674 -20.26366 -19.87327 -19.26891 -18.40898 -17.34673 -17.07290 -16.73557 -15.89997 -15.55742 -15.19182 -15.04910 -14.26008 -13.62148 -13.45416 -13.17886 -12.83557 -12.60921 -12.28857 -11.98820 -11.96207 -11.90583 -11.58001 -11.47285 -11.39243 -10.44923 -10.15354 -8.97614 -6.11538 1.11306 1.45535 1.50282 1.78224 1.88026 2.06061 2.37951 2.94660 3.07713 3.32018 3.55722 3.71769 3.92421 4.31773 4.34429 4.56232 4.69250 4.78822 4.99972 5.10582 5.40121 5.54877 5.60151 5.90845 6.50529 6.67770 6.89219 7.36851 7.85687 8.49401 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.038677 B = 0.010646 C = 0.009579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.761573 B = 2629.458989 C = 2922.478425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.037 4.037 3 Si 1.133 2.867 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.413 4.413 8 H 0.066 0.934 9 N -0.575 5.575 10 C 0.444 3.556 11 O -0.623 6.623 12 C -0.119 4.119 13 H 0.130 0.870 14 C -0.104 4.104 15 C -0.119 4.119 16 C -0.088 4.088 17 H 0.183 0.817 18 C 0.477 3.523 19 O -0.552 6.552 20 O -0.509 6.509 21 H 0.261 0.739 22 H 0.385 0.615 23 H 0.142 0.858 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.115 0.885 27 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.287 -10.848 1.513 11.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.236 4.236 3 Si 0.953 3.047 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.543 4.543 8 H 0.085 0.915 9 N -0.213 5.213 10 C 0.232 3.768 11 O -0.510 6.510 12 C -0.140 4.140 13 H 0.148 0.852 14 C -0.141 4.141 15 C -0.156 4.156 16 C -0.107 4.107 17 H 0.200 0.800 18 C 0.321 3.679 19 O -0.442 6.442 20 O -0.321 6.321 21 H 0.072 0.928 22 H 0.220 0.780 23 H 0.160 0.840 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.133 0.867 27 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -3.419 -9.404 1.394 10.103 hybrid contribution -0.110 -0.792 0.613 1.007 sum -3.528 -10.196 2.008 10.974 Atomic orbital electron populations 1.70933 1.06730 1.29575 1.47396 1.27781 0.96745 1.05092 0.94000 0.82626 0.73700 0.70373 0.77963 1.19864 1.20484 1.19165 1.20510 0.93675 0.85840 1.54226 0.91541 1.41964 1.08531 1.05362 1.65411 1.20459 0.87990 0.85840 0.82500 1.90493 1.16064 1.87896 1.56500 1.22430 1.01170 0.92940 0.97501 0.85245 1.22839 0.99504 0.95862 0.95904 1.22910 0.93856 1.01276 0.97559 1.22854 1.03869 0.94495 0.89468 0.80005 1.24009 0.79369 0.81954 0.82609 1.90691 1.39080 1.67182 1.47231 1.84470 1.38082 1.49785 1.59775 0.92847 0.78037 0.83988 0.92117 0.92995 0.86668 0.72195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.61 13.68 21.66 0.30 -50.31 15 2 C -0.04 -2.04 5.50 84.93 0.47 -1.57 15 3 Si 1.13 49.71 29.92 68.60 2.05 51.76 15 4 H -0.27 -11.42 7.11 99.48 0.71 -10.72 15 5 H -0.28 -11.96 7.11 99.48 0.71 -11.25 15 6 H -0.27 -11.09 7.11 99.48 0.71 -10.38 15 7 C -0.41 -24.38 9.68 84.04 0.81 -23.56 15 8 H 0.07 4.29 7.16 -2.91 -0.02 4.26 15 9 N -0.58 -30.01 5.16 -306.98 -1.59 -31.59 15 10 C 0.44 21.73 5.89 87.66 0.52 22.25 15 11 O -0.62 -36.21 15.10 -3.07 -0.05 -36.25 15 12 C -0.12 -3.89 4.25 -11.02 -0.05 -3.94 15 13 H 0.13 3.37 8.14 -2.39 -0.02 3.35 15 14 C -0.10 -2.77 7.45 31.21 0.23 -2.53 15 15 C -0.12 -3.42 7.05 31.21 0.22 -3.20 15 16 C -0.09 -2.46 4.21 -11.01 -0.05 -2.50 15 17 H 0.18 3.05 8.14 -2.39 -0.02 3.03 15 18 C 0.48 17.42 6.53 71.24 0.47 17.88 15 19 O -0.55 -25.21 16.65 21.96 0.37 -24.84 15 20 O -0.51 -16.14 13.42 -51.44 -0.69 -16.83 15 21 H 0.26 14.09 6.78 -92.71 -0.63 13.46 15 22 H 0.39 18.56 6.73 -92.71 -0.62 17.93 15 23 H 0.14 2.25 8.14 -2.39 -0.02 2.23 15 24 H 0.06 1.99 7.52 -2.39 -0.02 1.97 15 25 H 0.05 2.06 7.11 -2.39 -0.02 2.04 15 26 H 0.11 2.31 8.14 -2.39 -0.02 2.29 15 27 H 0.42 11.27 9.10 -74.05 -0.67 10.60 15 Total: -1.00 -79.50 242.80 3.08 -76.42 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: 0.06 Total: 28.83 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 2.62 Total: 2.81 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -1.29 Total: -81.90 kcal Atomic # 8 Polarization: -77.55 SS G_CDS: -0.37 Total: -77.92 kcal Atomic # 14 Polarization: 49.71 SS G_CDS: 2.05 Total: 51.76 kcal Total: -79.50 3.08 -76.42 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306623780.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.736 kcal (2) G-P(sol) polarization free energy of solvation -79.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds