Wall clock time and date at job start Sun Mar 29 2020 21:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31824 * 119.06496 * 2 1 4 4 C 1.32639 * 121.00044 * 180.02562 * 3 2 1 5 5 Cl 1.73602 * 120.42058 * 179.97438 * 4 3 2 6 6 C 1.38381 * 119.16257 * 0.02562 * 4 3 2 7 7 C 1.39578 * 118.30738 * 359.97438 * 6 4 3 8 8 N 1.38539 * 120.52914 * 179.97438 * 7 6 4 9 9 C 1.36943 * 119.99858 * 0.02562 * 8 7 6 10 10 H 1.08002 * 119.99788 * 359.97438 * 9 8 7 11 11 C 1.38842 * 119.99867 * 180.27797 * 9 8 7 12 12 N 1.31532 * 120.00329 * 179.72313 * 11 9 8 13 13 Si 1.86800 * 120.00207 * 359.72078 * 11 9 8 14 14 H 1.48510 * 109.47079 * 89.99902 * 13 11 9 15 15 H 1.48496 * 109.47530 * 210.00341 * 13 11 9 16 16 H 1.48501 * 109.47312 * 330.00585 * 13 11 9 17 17 N 1.31690 * 119.07470 * 180.28047 * 2 1 3 18 18 H 1.08996 * 109.47496 * 90.00492 * 1 2 3 19 19 H 1.09004 * 109.46614 * 210.00223 * 1 2 3 20 20 H 1.09005 * 109.47485 * 329.99582 * 1 2 3 21 21 H 1.07994 * 120.84929 * 180.02562 * 6 4 3 22 22 H 0.97000 * 120.00333 * 180.02562 * 8 7 6 23 23 H 0.97004 * 120.00693 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1474 1.1522 0.0000 4 6 3.4730 1.1970 -0.0005 5 17 4.3010 2.7229 -0.0012 6 6 4.1877 0.0121 -0.0016 7 6 3.4773 -1.1894 -0.0015 8 7 4.1464 -2.4025 -0.0031 9 6 5.5155 -2.4293 -0.0042 10 1 6.0737 -1.5047 -0.0043 11 6 6.1860 -3.6451 -0.0117 12 7 7.5011 -3.6710 -0.0182 13 14 5.2206 -5.2443 -0.0123 14 1 4.9578 -5.6633 -1.4126 15 1 6.0060 -6.2971 0.6804 16 1 3.9301 -5.0437 0.6947 17 7 2.1469 -1.1509 -0.0056 18 1 -0.3634 -0.0001 -1.0276 19 1 -0.3633 -0.8900 0.5139 20 1 -0.3634 0.8900 0.5139 21 1 5.2677 0.0168 -0.0016 22 1 3.6450 -3.2329 -0.0035 23 1 7.9696 -4.5203 -0.0230 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306698530.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:15 Heat of formation + Delta-G solvation = 22.647105 kcal Electronic energy + Delta-G solvation = -11594.824596 eV Core-core repulsion = 9275.277692 eV Total energy + Delta-G solvation = -2319.546903 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.036 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.67112 -38.04927 -37.63422 -34.60705 -33.81724 -32.40118 -29.17755 -26.99741 -24.51289 -22.91174 -20.69990 -18.67962 -18.28462 -16.76757 -16.27666 -16.24999 -15.57933 -14.99882 -14.57756 -14.09954 -14.03687 -13.77358 -13.11419 -12.96039 -12.69813 -12.28989 -12.17400 -12.09988 -11.45966 -11.16992 -10.51424 -10.14046 -9.50404 -8.62060 -6.06614 0.12682 0.39579 0.74094 1.27468 1.31449 1.35487 2.08067 2.46618 2.68179 3.13495 3.37084 3.84108 4.16283 4.48186 4.64901 4.85920 4.92525 5.04657 5.30748 5.49086 5.75572 6.11186 6.41203 6.96967 7.06088 7.49911 8.50471 Molecular weight = 213.04amu Principal moments of inertia in cm(-1) A = 0.034411 B = 0.009648 C = 0.007566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.496915 B = 2901.341596 C = 3699.690094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.362 3.638 3 N -0.604 5.604 4 C 0.246 3.754 5 Cl -0.024 7.024 6 C -0.302 4.302 7 C 0.388 3.612 8 N -0.541 5.541 9 C -0.325 4.325 10 H 0.097 0.903 11 C 0.007 3.993 12 N -0.901 5.901 13 Si 0.948 3.052 14 H -0.258 1.258 15 H -0.265 1.265 16 H -0.249 1.249 17 N -0.611 5.611 18 H 0.099 0.901 19 H 0.093 0.907 20 H 0.097 0.903 21 H 0.135 0.865 22 H 0.393 0.607 23 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.511 3.601 0.021 10.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.092 3.908 3 N -0.332 5.332 4 C 0.079 3.921 5 Cl 0.004 6.996 6 C -0.334 4.334 7 C 0.140 3.860 8 N -0.153 5.153 9 C -0.455 4.455 10 H 0.115 0.885 11 C -0.197 4.197 12 N -0.537 5.537 13 Si 0.769 3.231 14 H -0.183 1.183 15 H -0.190 1.190 16 H -0.174 1.174 17 N -0.342 5.342 18 H 0.117 0.883 19 H 0.112 0.888 20 H 0.116 0.884 21 H 0.153 0.847 22 H 0.230 0.770 23 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.850 3.495 0.015 10.451 hybrid contribution 1.280 -0.788 -0.010 1.503 sum -8.570 2.707 0.005 8.987 Atomic orbital electron populations 1.20618 0.82626 1.04844 1.04863 1.23519 0.98898 0.81219 0.87159 1.67612 1.07478 1.30872 1.27213 1.21543 0.90159 0.86918 0.93432 1.98355 1.75690 1.29301 1.96224 1.21571 1.01919 0.90903 1.18998 1.18304 0.88097 0.86524 0.93030 1.40842 1.05679 1.03893 1.64860 1.19333 0.79375 0.96567 1.50241 0.88512 1.25790 0.96490 1.01835 0.95591 1.69747 1.07996 1.29290 1.46637 0.85571 0.79222 0.78312 0.80007 1.18276 1.18977 1.17373 1.67713 1.07032 1.31544 1.27866 0.88275 0.88831 0.88435 0.84679 0.77014 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.73 10.32 71.23 0.73 -1.00 14 2 C 0.36 13.21 7.64 138.77 1.06 14.27 14 3 N -0.60 -23.32 10.33 -178.99 -1.85 -25.17 14 4 C 0.25 9.85 7.33 84.60 0.62 10.47 14 5 Cl -0.02 -0.81 29.15 -2.72 -0.08 -0.89 14 6 C -0.30 -13.30 9.20 22.63 0.21 -13.09 14 7 C 0.39 17.58 7.68 133.12 1.02 18.60 14 8 N -0.54 -25.10 5.23 -188.70 -0.99 -26.09 14 9 C -0.33 -16.71 10.05 84.04 0.84 -15.87 14 10 H 0.10 5.37 5.96 -2.91 -0.02 5.36 14 11 C 0.01 0.36 5.50 84.88 0.47 0.82 14 12 N -0.90 -48.41 13.96 21.65 0.30 -48.11 14 13 Si 0.95 37.38 27.73 68.60 1.90 39.28 14 14 H -0.26 -9.87 7.11 99.48 0.71 -9.17 14 15 H -0.27 -10.18 7.11 99.48 0.71 -9.48 14 16 H -0.25 -9.19 6.52 99.48 0.65 -8.54 14 17 N -0.61 -25.24 10.37 -185.42 -1.92 -27.17 14 18 H 0.10 2.05 8.14 -2.39 -0.02 2.03 14 19 H 0.09 2.04 8.14 -2.38 -0.02 2.02 14 20 H 0.10 2.04 8.14 -2.38 -0.02 2.02 14 21 H 0.14 6.17 6.07 -2.91 -0.02 6.15 14 22 H 0.39 16.92 5.88 -92.71 -0.55 16.38 14 23 H 0.29 14.17 8.31 -92.71 -0.77 13.40 14 Total: -1.00 -56.73 225.87 2.98 -53.76 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.65 Total: 20.18 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 4.96 Total: 14.21 kcal Atomic # 7 Polarization: -122.08 SS G_CDS: -4.46 Total: -126.53 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 1.90 Total: 39.28 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal Total: -56.73 2.98 -53.76 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306698530.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.403 kcal (2) G-P(sol) polarization free energy of solvation -56.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds