Wall clock time and date at job start Sun Mar 29 2020 21:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99452 * 2 1 4 4 H 1.48504 * 109.46991 * 273.03663 * 3 2 1 5 5 H 1.48492 * 109.47601 * 33.03983 * 3 2 1 6 6 H 1.48502 * 109.46975 * 153.03857 * 3 2 1 7 7 C 1.38806 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99968 * 343.93639 * 7 2 1 9 9 N 1.36940 * 119.99862 * 163.93769 * 7 2 1 10 10 C 1.46494 * 120.00032 * 125.00972 * 9 7 2 11 11 C 1.53002 * 109.47215 * 89.99910 * 10 9 7 12 12 O 1.43366 * 109.63328 * 59.99857 * 11 10 9 13 13 C 1.44197 * 107.29067 * 239.45515 * 12 11 10 14 14 C 1.54914 * 103.07369 * 338.56257 * 13 12 11 15 15 O 1.43756 * 109.63025 * 300.63752 * 11 10 9 16 16 C 1.46505 * 119.99555 * 305.00552 * 9 7 2 17 17 C 1.52996 * 117.49987 * 5.39689 * 16 9 7 18 18 C 1.52993 * 117.50033 * 296.76970 * 16 9 7 19 19 H 0.96997 * 120.00475 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.47394 * 329.99888 * 10 9 7 21 21 H 1.09001 * 109.47372 * 209.99217 * 10 9 7 22 22 H 1.09001 * 109.51089 * 180.31338 * 11 10 9 23 23 H 1.08997 * 110.69594 * 96.95807 * 13 12 11 24 24 H 1.08998 * 110.69489 * 220.16556 * 13 12 11 25 25 H 1.09003 * 110.97868 * 277.44933 * 14 13 12 26 26 H 1.09001 * 111.00779 * 153.68609 * 14 13 12 27 27 H 1.09003 * 115.54431 * 151.10558 * 16 9 7 28 28 H 1.08998 * 117.50411 * 359.97438 * 17 16 9 29 29 H 1.09005 * 117.49773 * 145.01860 * 17 16 9 30 30 H 1.09001 * 117.49980 * 214.97841 * 18 16 9 31 31 H 1.08993 * 117.50169 * 0.02562 * 18 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.4333 2.0836 -1.3982 5 1 1.4812 2.6333 0.7633 6 1 3.5783 1.4227 0.6348 7 6 2.0103 -1.2021 0.0005 8 1 1.5020 -2.1190 0.2597 9 7 3.3396 -1.2253 -0.3276 10 6 4.3119 -1.8142 0.5964 11 6 4.4722 -3.3039 0.2868 12 8 4.9350 -3.4690 -1.0600 13 6 3.9483 -4.2547 -1.7589 14 6 3.1979 -4.9761 -0.6116 15 8 3.2032 -3.9651 0.4247 16 6 3.7892 -0.6612 -1.6027 17 6 2.7467 0.0512 -2.4668 18 6 3.2795 -1.3205 -2.8858 19 1 -0.4851 0.8400 -0.0004 20 1 3.9601 -1.6917 1.6207 21 1 5.2732 -1.3135 0.4800 22 1 5.1915 -3.7440 0.9776 23 1 3.2693 -3.6112 -2.3185 24 1 4.4282 -4.9769 -2.4193 25 1 3.7387 -5.8666 -0.2910 26 1 2.1791 -5.2262 -0.9076 27 1 4.8047 -0.2652 -1.6095 28 1 1.7263 0.0999 -2.0869 29 1 3.0763 0.9163 -3.0423 30 1 3.9594 -1.3578 -3.7369 31 1 2.6093 -2.1737 -2.7813 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306842946.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:02 Heat of formation + Delta-G solvation = -23.566738 kcal Electronic energy + Delta-G solvation = -15534.692038 eV Core-core repulsion = 13011.805426 eV Total energy + Delta-G solvation = -2522.886613 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.66919 -36.99757 -34.26587 -33.05467 -31.78127 -29.44330 -26.72678 -23.83751 -22.90662 -21.43607 -21.32092 -19.59642 -16.97214 -16.58084 -16.21859 -15.20224 -14.95290 -14.47093 -13.86938 -13.31054 -13.12448 -12.85645 -12.56179 -12.09429 -11.74222 -11.71381 -11.04434 -10.85215 -10.63458 -10.39475 -10.29861 -9.73111 -9.58197 -9.35392 -9.13611 -8.93867 -8.27710 -6.31382 -5.91166 -3.58876 3.45017 3.53486 3.61648 4.04085 4.59222 4.72159 4.92249 5.00602 5.12613 5.31954 5.40938 5.55187 5.82891 5.88204 5.93493 6.00450 6.10529 6.24769 6.33766 6.35536 6.48359 6.60544 6.67446 6.73717 7.11380 7.38960 7.72453 8.18952 8.69614 9.13133 9.75047 10.24836 11.17900 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.037374 B = 0.013531 C = 0.012570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.003027 B = 2068.810428 C = 2226.983743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.052 3.948 3 Si 0.882 3.118 4 H -0.271 1.271 5 H -0.307 1.307 6 H -0.272 1.272 7 C -0.272 4.272 8 H 0.079 0.921 9 N -0.563 5.563 10 C 0.135 3.865 11 C 0.212 3.788 12 O -0.381 6.381 13 C 0.023 3.977 14 C 0.018 3.982 15 O -0.353 6.353 16 C 0.124 3.876 17 C -0.207 4.207 18 C -0.210 4.210 19 H 0.263 0.737 20 H 0.073 0.927 21 H 0.055 0.945 22 H 0.062 0.938 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.059 0.941 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.120 0.880 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.357 -6.009 -2.823 10.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.149 4.149 3 Si 0.711 3.289 4 H -0.197 1.197 5 H -0.235 1.235 6 H -0.197 1.197 7 C -0.401 4.401 8 H 0.096 0.904 9 N -0.282 5.282 10 C 0.009 3.991 11 C 0.115 3.885 12 O -0.301 6.301 13 C -0.053 4.053 14 C -0.059 4.059 15 O -0.273 6.273 16 C 0.016 3.984 17 C -0.245 4.245 18 C -0.250 4.250 19 H 0.073 0.927 20 H 0.091 0.909 21 H 0.073 0.927 22 H 0.079 0.921 23 H 0.106 0.894 24 H 0.098 0.902 25 H 0.077 0.923 26 H 0.117 0.883 27 H 0.103 0.897 28 H 0.138 0.862 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.218 -5.764 -2.686 10.391 hybrid contribution 0.311 0.736 -0.170 0.817 sum 8.529 -5.028 -2.857 10.305 Atomic orbital electron populations 1.69870 1.06239 1.26826 1.51188 1.25892 0.95002 0.98411 0.95635 0.86885 0.80216 0.83811 0.78008 1.19674 1.23508 1.19713 1.18701 0.83227 0.93503 1.44626 0.90378 1.43365 1.04088 1.67848 1.12869 1.21430 0.93436 0.89189 0.95083 1.24962 0.83156 0.96808 0.83613 1.88756 1.44039 1.74152 1.23202 1.24241 0.91572 0.93996 0.95541 1.24191 1.02065 0.91911 0.87745 1.89357 1.36886 1.48191 1.52849 1.21166 0.94155 0.99253 0.83845 1.23618 1.02459 0.94013 1.04444 1.23356 1.04727 0.96561 1.00399 0.92750 0.90903 0.92700 0.92055 0.89390 0.90174 0.92315 0.88340 0.89748 0.86211 0.90971 0.91336 0.89255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.97 55.49 0.78 -26.46 16 2 C 0.05 1.48 3.70 -17.43 -0.06 1.42 16 3 Si 0.88 22.40 24.75 -169.99 -4.21 18.19 16 4 H -0.27 -6.59 5.71 56.52 0.32 -6.26 16 5 H -0.31 -7.98 7.11 56.52 0.40 -7.58 16 6 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.27 -7.53 8.77 -15.06 -0.13 -7.66 16 8 H 0.08 2.42 7.37 -52.49 -0.39 2.04 16 9 N -0.56 -13.40 1.93 -165.67 -0.32 -13.72 16 10 C 0.14 2.80 5.91 -4.04 -0.02 2.78 16 11 C 0.21 3.98 4.34 37.16 0.16 4.14 16 12 O -0.38 -7.01 10.57 -59.04 -0.62 -7.63 16 13 C 0.02 0.37 7.94 38.17 0.30 0.67 16 14 C 0.02 0.28 7.95 38.17 0.30 0.59 16 15 O -0.35 -7.17 10.12 -59.04 -0.60 -7.77 16 16 C 0.12 2.74 4.72 -67.93 -0.32 2.42 16 17 C -0.21 -4.68 6.60 -26.73 -0.18 -4.86 16 18 C -0.21 -4.30 9.28 -26.73 -0.25 -4.55 16 19 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 20 H 0.07 1.53 8.04 -51.93 -0.42 1.11 16 21 H 0.05 1.03 8.07 -51.93 -0.42 0.61 16 22 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.09 1.58 4.70 -51.93 -0.24 1.33 16 24 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 27 H 0.08 1.75 8.14 -51.93 -0.42 1.32 16 28 H 0.12 3.13 4.82 -51.93 -0.25 2.88 16 29 H 0.07 1.50 7.83 -51.93 -0.41 1.09 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.09 1.93 5.96 -51.93 -0.31 1.62 16 LS Contribution 244.44 15.07 3.68 3.68 Total: -1.00 -30.76 244.44 -5.67 -36.43 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -4.18 Total: 2.32 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -0.20 Total: -5.06 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.45 Total: -40.17 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -1.22 Total: -15.40 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.21 Total: 18.19 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -30.76 -5.67 -36.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306842946.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.865 kcal (2) G-P(sol) polarization free energy of solvation -30.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds