Wall clock time and date at job start Sun Mar 29 2020 21:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99452 * 2 1 4 4 H 1.48504 * 109.46991 * 273.03663 * 3 2 1 5 5 H 1.48492 * 109.47601 * 33.03983 * 3 2 1 6 6 H 1.48502 * 109.46975 * 153.03857 * 3 2 1 7 7 C 1.38806 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99968 * 343.93639 * 7 2 1 9 9 N 1.36940 * 119.99862 * 163.93769 * 7 2 1 10 10 C 1.46494 * 120.00032 * 125.00972 * 9 7 2 11 11 C 1.53002 * 109.47215 * 89.99910 * 10 9 7 12 12 O 1.43366 * 109.63328 * 59.99857 * 11 10 9 13 13 C 1.44197 * 107.29067 * 239.45515 * 12 11 10 14 14 C 1.54914 * 103.07369 * 338.56257 * 13 12 11 15 15 O 1.43756 * 109.63025 * 300.63752 * 11 10 9 16 16 C 1.46505 * 119.99555 * 305.00552 * 9 7 2 17 17 C 1.52996 * 117.49987 * 5.39689 * 16 9 7 18 18 C 1.52993 * 117.50033 * 296.76970 * 16 9 7 19 19 H 0.96997 * 120.00475 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.47394 * 329.99888 * 10 9 7 21 21 H 1.09001 * 109.47372 * 209.99217 * 10 9 7 22 22 H 1.09001 * 109.51089 * 180.31338 * 11 10 9 23 23 H 1.08997 * 110.69594 * 96.95807 * 13 12 11 24 24 H 1.08998 * 110.69489 * 220.16556 * 13 12 11 25 25 H 1.09003 * 110.97868 * 277.44933 * 14 13 12 26 26 H 1.09001 * 111.00779 * 153.68609 * 14 13 12 27 27 H 1.09003 * 115.54431 * 151.10558 * 16 9 7 28 28 H 1.08998 * 117.50411 * 359.97438 * 17 16 9 29 29 H 1.09005 * 117.49773 * 145.01860 * 17 16 9 30 30 H 1.09001 * 117.49980 * 214.97841 * 18 16 9 31 31 H 1.08993 * 117.50169 * 0.02562 * 18 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.4333 2.0836 -1.3982 5 1 1.4812 2.6333 0.7633 6 1 3.5783 1.4227 0.6348 7 6 2.0103 -1.2021 0.0005 8 1 1.5020 -2.1190 0.2597 9 7 3.3396 -1.2253 -0.3276 10 6 4.3119 -1.8142 0.5964 11 6 4.4722 -3.3039 0.2868 12 8 4.9350 -3.4690 -1.0600 13 6 3.9483 -4.2547 -1.7589 14 6 3.1979 -4.9761 -0.6116 15 8 3.2032 -3.9651 0.4247 16 6 3.7892 -0.6612 -1.6027 17 6 2.7467 0.0512 -2.4668 18 6 3.2795 -1.3205 -2.8858 19 1 -0.4851 0.8400 -0.0004 20 1 3.9601 -1.6917 1.6207 21 1 5.2732 -1.3135 0.4800 22 1 5.1915 -3.7440 0.9776 23 1 3.2693 -3.6112 -2.3185 24 1 4.4282 -4.9769 -2.4193 25 1 3.7387 -5.8666 -0.2910 26 1 2.1791 -5.2262 -0.9076 27 1 4.8047 -0.2652 -1.6095 28 1 1.7263 0.0999 -2.0869 29 1 3.0763 0.9163 -3.0423 30 1 3.9594 -1.3578 -3.7369 31 1 2.6093 -2.1737 -2.7813 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306842946.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:02 Heat of formation + Delta-G solvation = -45.090721 kcal Electronic energy + Delta-G solvation = -15535.625388 eV Core-core repulsion = 13011.805426 eV Total energy + Delta-G solvation = -2523.819963 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.08531 -38.76662 -35.69124 -34.83337 -33.81145 -30.95201 -28.38445 -25.76419 -24.26308 -23.10155 -22.86485 -21.47033 -18.80859 -18.13691 -17.71029 -16.67326 -16.54147 -16.43834 -15.41358 -15.00828 -14.93171 -14.34519 -14.19746 -13.66333 -13.55963 -13.36256 -12.83380 -12.51031 -12.16833 -12.15243 -12.09454 -11.74836 -11.31443 -10.91088 -10.75754 -10.62188 -10.26954 -8.28414 -8.02698 -5.76110 1.44213 1.46609 1.59158 2.50196 2.72093 3.07652 3.19282 3.32049 3.49558 3.88545 4.09050 4.26546 4.29202 4.37647 4.46274 4.54194 4.59560 4.67127 4.80788 4.84592 4.97996 5.01618 5.06288 5.25277 5.41415 5.60422 6.04633 6.35431 6.47438 7.16996 7.66161 8.18408 9.03116 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.037374 B = 0.013531 C = 0.012570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.003027 B = 2068.810428 C = 2226.983743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.941 3.059 4 H -0.252 1.252 5 H -0.319 1.319 6 H -0.265 1.265 7 C -0.254 4.254 8 H 0.031 0.969 9 N -0.572 5.572 10 C 0.126 3.874 11 C 0.214 3.786 12 O -0.387 6.387 13 C 0.022 3.978 14 C 0.014 3.986 15 O -0.392 6.392 16 C 0.115 3.885 17 C -0.223 4.223 18 C -0.187 4.187 19 H 0.261 0.739 20 H 0.060 0.940 21 H 0.080 0.920 22 H 0.093 0.907 23 H 0.065 0.935 24 H 0.119 0.881 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.111 0.889 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.961 -6.207 -3.807 13.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.191 4.191 3 Si 0.768 3.232 4 H -0.177 1.177 5 H -0.248 1.248 6 H -0.189 1.189 7 C -0.384 4.384 8 H 0.049 0.951 9 N -0.292 5.292 10 C 0.000 4.000 11 C 0.117 3.883 12 O -0.308 6.308 13 C -0.054 4.054 14 C -0.062 4.062 15 O -0.313 6.313 16 C 0.008 3.992 17 C -0.261 4.261 18 C -0.227 4.227 19 H 0.070 0.930 20 H 0.078 0.922 21 H 0.098 0.902 22 H 0.110 0.890 23 H 0.083 0.917 24 H 0.137 0.863 25 H 0.109 0.891 26 H 0.116 0.884 27 H 0.128 0.872 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.121 0.879 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.862 -5.985 -3.686 12.938 hybrid contribution -0.509 0.663 0.110 0.843 sum 10.353 -5.322 -3.576 12.178 Atomic orbital electron populations 1.69995 1.07992 1.27413 1.53853 1.26432 0.95377 1.01494 0.95791 0.85942 0.78821 0.79688 0.78733 1.17663 1.24773 1.18907 1.18336 0.84989 0.91695 1.43367 0.95111 1.43385 1.03065 1.68456 1.14340 1.21635 0.93533 0.90904 0.93879 1.24894 0.83367 0.95431 0.84576 1.88732 1.44249 1.74694 1.23083 1.24327 0.91302 0.94099 0.95661 1.24425 1.02784 0.92124 0.86834 1.89328 1.38037 1.49664 1.54251 1.21395 0.94922 0.99544 0.83362 1.23533 1.00647 0.96170 1.05718 1.23313 1.04037 0.94646 1.00671 0.92960 0.92170 0.90181 0.88988 0.91663 0.86347 0.89057 0.88371 0.87170 0.90048 0.88760 0.87871 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.45 13.97 21.65 0.30 -59.15 16 2 C 0.01 0.36 3.70 84.86 0.31 0.68 16 3 Si 0.94 46.33 24.75 68.60 1.70 48.03 16 4 H -0.25 -11.52 5.71 99.48 0.57 -10.95 16 5 H -0.32 -16.18 7.11 99.48 0.71 -15.47 16 6 H -0.26 -12.57 7.11 99.48 0.71 -11.87 16 7 C -0.25 -14.37 8.77 84.03 0.74 -13.63 16 8 H 0.03 2.03 7.37 -2.91 -0.02 2.01 16 9 N -0.57 -26.68 1.93 -678.06 -1.31 -27.99 16 10 C 0.13 5.01 5.91 86.38 0.51 5.52 16 11 C 0.21 7.59 4.34 71.98 0.31 7.90 16 12 O -0.39 -13.04 10.57 -126.22 -1.33 -14.37 16 13 C 0.02 0.65 7.94 72.64 0.58 1.23 16 14 C 0.01 0.44 7.95 72.64 0.58 1.01 16 15 O -0.39 -15.71 10.12 -126.22 -1.28 -16.99 16 16 C 0.11 4.78 4.72 44.99 0.21 4.99 16 17 C -0.22 -9.63 6.60 30.59 0.20 -9.43 16 18 C -0.19 -7.19 9.28 30.59 0.28 -6.90 16 19 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 20 H 0.06 2.50 8.04 -2.39 -0.02 2.48 16 21 H 0.08 2.75 8.07 -2.39 -0.02 2.73 16 22 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 23 H 0.07 2.25 4.70 -2.39 -0.01 2.24 16 24 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 25 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 27 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 28 H 0.08 4.25 4.82 -2.39 -0.01 4.23 16 29 H 0.09 3.62 7.83 -2.38 -0.02 3.60 16 30 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 31 H 0.07 3.04 5.96 -2.39 -0.01 3.03 16 Total: -1.00 -67.47 244.44 2.79 -64.69 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.98 Total: 14.42 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 3.73 Total: -8.63 kcal Atomic # 7 Polarization: -86.13 SS G_CDS: -1.01 Total: -87.14 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -2.61 Total: -31.36 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.70 Total: 48.03 kcal Total: -67.47 2.79 -64.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306842946.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.597 kcal (2) G-P(sol) polarization free energy of solvation -67.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds