Wall clock time and date at job start Sun Mar 29 2020 22:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46932 * 2 1 4 4 C 1.50699 * 109.47464 * 120.00567 * 2 1 3 5 5 O 1.21279 * 119.99600 * 273.79116 * 4 2 1 6 6 N 1.34778 * 119.99872 * 93.78672 * 4 2 1 7 7 C 1.47581 * 134.49215 * 355.03725 * 6 4 2 8 8 C 1.53943 * 86.11573 * 155.35941 * 7 6 4 9 9 O 1.42896 * 113.74274 * 269.26225 * 8 7 6 10 10 C 1.50700 * 113.74502 * 137.95112 * 8 7 6 11 11 H 1.07999 * 119.99804 * 0.02562 * 10 8 7 12 12 C 1.37878 * 120.00492 * 179.97438 * 10 8 7 13 13 N 1.31515 * 119.99547 * 0.02562 * 12 10 8 14 14 Si 1.86794 * 120.00199 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.46963 * 90.00391 * 14 12 10 16 16 H 1.48497 * 109.47104 * 210.00038 * 14 12 10 17 17 H 1.48494 * 109.47414 * 330.00379 * 14 12 10 18 18 C 1.47579 * 134.49169 * 175.03977 * 6 4 2 19 19 H 1.08993 * 109.47397 * 61.16248 * 1 2 3 20 20 H 1.08998 * 109.47270 * 181.16784 * 1 2 3 21 21 H 1.09008 * 109.46966 * 301.16214 * 1 2 3 22 22 H 1.09005 * 109.46533 * 240.00403 * 2 1 3 23 23 H 1.09007 * 109.46820 * 180.02562 * 3 2 1 24 24 H 1.08996 * 109.47771 * 300.00328 * 3 2 1 25 25 H 1.09005 * 109.47182 * 60.00801 * 3 2 1 26 26 H 1.08997 * 113.76981 * 41.06222 * 7 6 4 27 27 H 1.09000 * 113.87101 * 269.67366 * 7 6 4 28 28 H 0.96704 * 114.00210 * 180.02562 * 9 8 7 29 29 H 0.97006 * 119.99588 * 179.97438 * 13 12 10 30 30 H 1.09000 * 113.77112 * 90.33655 * 18 6 4 31 31 H 1.09008 * 113.76622 * 318.94141 * 18 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.1691 -0.1004 2.2695 6 7 2.3298 -2.0239 1.1758 7 6 2.2021 -3.0713 0.1440 8 6 3.3474 -3.7895 0.8804 9 8 4.6475 -3.4428 0.3993 10 6 3.1453 -5.2771 1.0124 11 1 2.2577 -5.7395 0.6066 12 6 4.0940 -6.0478 1.6504 13 7 5.1751 -5.4847 2.1441 14 14 3.8431 -7.8915 1.8146 15 1 4.4356 -8.5784 0.6388 16 1 4.5045 -8.3726 3.0540 17 1 2.3899 -8.1894 1.8815 18 6 2.9137 -2.9924 2.1240 19 1 -0.3634 0.4956 -0.9001 20 1 -0.3634 -1.0274 0.0209 21 1 -0.3633 0.5318 0.8795 22 1 1.8933 -0.5138 -0.8901 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6767 1.9563 0.8901 26 1 2.4671 -2.7351 -0.8584 27 1 1.2542 -3.6086 0.1757 28 1 5.3698 -3.8922 0.8591 29 1 5.8423 -6.0269 2.5933 30 1 2.1745 -3.5055 2.7390 31 1 3.7469 -2.5931 2.7025 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306926132.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:43 Heat of formation + Delta-G solvation = -64.668114 kcal Electronic energy + Delta-G solvation = -14645.596760 eV Core-core repulsion = 12120.927858 eV Total energy + Delta-G solvation = -2524.668902 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.57270 -37.53030 -34.01952 -33.90883 -32.18598 -28.60206 -27.02139 -25.58391 -25.23266 -22.30079 -19.72197 -18.08783 -17.36044 -16.53458 -15.38474 -14.90998 -14.72731 -14.26910 -13.86222 -13.25072 -12.86886 -12.72509 -12.33399 -12.10946 -11.86117 -11.65019 -11.54825 -11.08100 -11.00438 -10.95838 -10.76038 -10.49610 -10.28175 -9.67976 -9.01072 -8.73580 -8.38024 -7.79939 -6.37924 -4.49025 3.15240 3.23119 3.25044 3.27224 3.62530 4.18898 4.85714 4.88221 5.06468 5.25188 5.51303 5.64728 5.72276 5.87859 5.94326 5.98244 6.02600 6.22602 6.31427 6.33563 6.40669 6.46003 6.76790 6.83108 7.12504 7.64175 7.81365 8.53175 8.55004 8.84330 9.22141 9.46629 10.68589 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.059750 B = 0.007718 C = 0.007493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.507084 B = 3627.116541 C = 3735.993989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 C -0.132 4.132 4 C 0.531 3.469 5 O -0.565 6.565 6 N -0.632 5.632 7 C 0.103 3.897 8 C 0.238 3.762 9 O -0.575 6.575 10 C -0.539 4.539 11 H 0.071 0.929 12 C 0.071 3.929 13 N -0.897 5.897 14 Si 0.908 3.092 15 H -0.277 1.277 16 H -0.284 1.284 17 H -0.271 1.271 18 C 0.085 3.915 19 H 0.063 0.937 20 H 0.057 0.943 21 H 0.060 0.940 22 H 0.086 0.914 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.394 0.606 29 H 0.274 0.726 30 H 0.077 0.923 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.819 4.650 -4.677 8.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.132 4.132 3 C -0.190 4.190 4 C 0.320 3.680 5 O -0.446 6.446 6 N -0.366 5.366 7 C -0.019 4.019 8 C 0.197 3.803 9 O -0.388 6.388 10 C -0.577 4.577 11 H 0.090 0.910 12 C -0.131 4.131 13 N -0.537 5.537 14 Si 0.735 3.265 15 H -0.203 1.203 16 H -0.209 1.209 17 H -0.196 1.196 18 C -0.037 4.037 19 H 0.082 0.918 20 H 0.076 0.924 21 H 0.079 0.921 22 H 0.104 0.896 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.105 0.895 28 H 0.250 0.750 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.948 5.502 -4.415 9.227 hybrid contribution 0.240 -1.355 0.545 1.479 sum -5.708 4.148 -3.870 8.047 Atomic orbital electron populations 1.21678 0.93132 1.02293 1.02289 1.21186 0.97353 0.97486 0.97222 1.21628 1.01320 0.94085 1.01965 1.20220 0.77093 0.80969 0.89717 1.90612 1.55349 1.66017 1.32578 1.50242 1.60856 1.06309 1.19152 1.23523 0.99674 0.85909 0.92831 1.19842 0.81580 0.91521 0.87385 1.86012 1.16688 1.71746 1.64310 1.21505 1.06792 0.91608 1.37766 0.91037 1.25090 0.94619 0.99835 0.93592 1.69327 1.09906 1.36675 1.37811 0.86323 0.78645 0.83705 0.77791 1.20253 1.20912 1.19573 1.24230 0.96291 0.86638 0.96571 0.91820 0.92355 0.92137 0.89569 0.92518 0.92315 0.91675 0.91176 0.89536 0.75026 0.91598 0.90444 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.18 37.16 0.34 -1.43 16 2 C -0.11 -1.74 3.10 -91.77 -0.28 -2.03 16 3 C -0.13 -1.87 8.84 37.16 0.33 -1.54 16 4 C 0.53 11.07 7.07 -10.99 -0.08 10.99 16 5 O -0.57 -13.61 16.98 5.56 0.09 -13.51 16 6 N -0.63 -13.70 3.61 -178.33 -0.64 -14.34 16 7 C 0.10 2.09 7.82 -2.98 -0.02 2.06 16 8 C 0.24 5.75 1.45 -90.85 -0.13 5.62 16 9 O -0.57 -14.85 13.50 -35.23 -0.48 -15.32 16 10 C -0.54 -13.50 8.62 -34.44 -0.30 -13.80 16 11 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 12 C 0.07 1.79 5.39 -17.82 -0.10 1.70 16 13 N -0.90 -23.22 11.08 55.43 0.61 -22.61 16 14 Si 0.91 19.52 29.54 -169.99 -5.02 14.50 16 15 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 16 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 17 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 18 C 0.08 2.01 8.23 -2.97 -0.02 1.99 16 19 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 20 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 21 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 22 H 0.09 1.28 7.54 -51.93 -0.39 0.89 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.97 7.85 -51.93 -0.41 0.56 16 26 H 0.07 1.31 7.82 -51.93 -0.41 0.91 16 27 H 0.09 1.57 8.09 -51.93 -0.42 1.15 16 28 H 0.39 10.41 6.42 45.56 0.29 10.71 16 29 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 30 H 0.08 1.78 8.09 -51.93 -0.42 1.36 16 31 H 0.07 1.68 8.14 -51.92 -0.42 1.25 16 LS Contribution 266.50 15.07 4.02 4.02 Total: -1.00 -28.66 266.50 -5.51 -34.17 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -3.83 Total: 9.55 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -0.26 Total: 3.55 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: -0.03 Total: -36.95 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.38 Total: -28.84 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.66 -5.51 -34.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306926132.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.497 kcal (2) G-P(sol) polarization free energy of solvation -28.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds