Wall clock time and date at job start Sun Mar 29 2020 22:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46932 * 2 1 4 4 C 1.50699 * 109.47464 * 120.00567 * 2 1 3 5 5 O 1.21279 * 119.99600 * 273.79116 * 4 2 1 6 6 N 1.34778 * 119.99872 * 93.78672 * 4 2 1 7 7 C 1.47581 * 134.49215 * 355.03725 * 6 4 2 8 8 C 1.53943 * 86.11573 * 155.35941 * 7 6 4 9 9 O 1.42896 * 113.74274 * 269.26225 * 8 7 6 10 10 C 1.50700 * 113.74502 * 137.95112 * 8 7 6 11 11 H 1.07999 * 119.99804 * 0.02562 * 10 8 7 12 12 C 1.37878 * 120.00492 * 179.97438 * 10 8 7 13 13 N 1.31515 * 119.99547 * 0.02562 * 12 10 8 14 14 Si 1.86794 * 120.00199 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.46963 * 90.00391 * 14 12 10 16 16 H 1.48497 * 109.47104 * 210.00038 * 14 12 10 17 17 H 1.48494 * 109.47414 * 330.00379 * 14 12 10 18 18 C 1.47579 * 134.49169 * 175.03977 * 6 4 2 19 19 H 1.08993 * 109.47397 * 61.16248 * 1 2 3 20 20 H 1.08998 * 109.47270 * 181.16784 * 1 2 3 21 21 H 1.09008 * 109.46966 * 301.16214 * 1 2 3 22 22 H 1.09005 * 109.46533 * 240.00403 * 2 1 3 23 23 H 1.09007 * 109.46820 * 180.02562 * 3 2 1 24 24 H 1.08996 * 109.47771 * 300.00328 * 3 2 1 25 25 H 1.09005 * 109.47182 * 60.00801 * 3 2 1 26 26 H 1.08997 * 113.76981 * 41.06222 * 7 6 4 27 27 H 1.09000 * 113.87101 * 269.67366 * 7 6 4 28 28 H 0.96704 * 114.00210 * 180.02562 * 9 8 7 29 29 H 0.97006 * 119.99588 * 179.97438 * 13 12 10 30 30 H 1.09000 * 113.77112 * 90.33655 * 18 6 4 31 31 H 1.09008 * 113.76622 * 318.94141 * 18 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.1691 -0.1004 2.2695 6 7 2.3298 -2.0239 1.1758 7 6 2.2021 -3.0713 0.1440 8 6 3.3474 -3.7895 0.8804 9 8 4.6475 -3.4428 0.3993 10 6 3.1453 -5.2771 1.0124 11 1 2.2577 -5.7395 0.6066 12 6 4.0940 -6.0478 1.6504 13 7 5.1751 -5.4847 2.1441 14 14 3.8431 -7.8915 1.8146 15 1 4.4356 -8.5784 0.6388 16 1 4.5045 -8.3726 3.0540 17 1 2.3899 -8.1894 1.8815 18 6 2.9137 -2.9924 2.1240 19 1 -0.3634 0.4956 -0.9001 20 1 -0.3634 -1.0274 0.0209 21 1 -0.3633 0.5318 0.8795 22 1 1.8933 -0.5138 -0.8901 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6767 1.9563 0.8901 26 1 2.4671 -2.7351 -0.8584 27 1 1.2542 -3.6086 0.1757 28 1 5.3698 -3.8922 0.8591 29 1 5.8423 -6.0269 2.5933 30 1 2.1745 -3.5055 2.7390 31 1 3.7469 -2.5931 2.7025 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306926132.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:43 Heat of formation + Delta-G solvation = -85.209557 kcal Electronic energy + Delta-G solvation = -14646.487504 eV Core-core repulsion = 12120.927858 eV Total energy + Delta-G solvation = -2525.559646 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.27377 -39.26150 -35.83173 -35.30754 -34.13635 -30.37698 -28.09867 -27.37734 -27.00397 -23.74986 -21.45740 -19.79114 -19.15424 -18.16172 -17.22482 -16.59362 -16.37943 -15.99274 -15.25017 -14.89720 -14.49530 -14.32743 -13.85237 -13.55089 -13.42551 -13.13672 -12.95625 -12.79053 -12.68765 -12.24839 -12.22719 -12.10559 -11.94953 -11.45901 -10.80648 -10.56786 -10.25710 -9.58201 -8.27345 -6.45709 1.46595 1.48876 1.58646 1.65181 1.98635 2.39884 2.95554 3.43357 3.77592 3.93137 4.09864 4.20735 4.38123 4.52770 4.62208 4.72468 4.75550 4.82770 4.87385 4.88987 4.92025 5.09191 5.24031 5.26586 5.30213 5.72220 5.89200 6.61839 6.88517 7.17146 7.28665 7.42544 8.78478 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.059750 B = 0.007718 C = 0.007493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.507084 B = 3627.116541 C = 3735.993989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.105 4.105 3 C -0.130 4.130 4 C 0.519 3.481 5 O -0.607 6.607 6 N -0.636 5.636 7 C 0.119 3.881 8 C 0.217 3.783 9 O -0.585 6.585 10 C -0.554 4.554 11 H 0.081 0.919 12 C 0.025 3.975 13 N -0.923 5.923 14 Si 0.973 3.027 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.263 1.263 18 C 0.082 3.918 19 H 0.099 0.901 20 H 0.058 0.942 21 H 0.051 0.949 22 H 0.101 0.899 23 H 0.041 0.959 24 H 0.098 0.902 25 H 0.052 0.948 26 H 0.090 0.910 27 H 0.113 0.887 28 H 0.387 0.613 29 H 0.275 0.725 30 H 0.079 0.921 31 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.390 4.428 -6.364 10.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.126 4.126 3 C -0.188 4.188 4 C 0.311 3.689 5 O -0.490 6.490 6 N -0.369 5.369 7 C -0.002 4.002 8 C 0.176 3.824 9 O -0.398 6.398 10 C -0.592 4.592 11 H 0.100 0.900 12 C -0.175 4.175 13 N -0.564 5.564 14 Si 0.798 3.202 15 H -0.199 1.199 16 H -0.212 1.212 17 H -0.187 1.187 18 C -0.042 4.042 19 H 0.118 0.882 20 H 0.077 0.923 21 H 0.070 0.930 22 H 0.119 0.881 23 H 0.061 0.939 24 H 0.116 0.884 25 H 0.071 0.929 26 H 0.108 0.892 27 H 0.130 0.870 28 H 0.242 0.758 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -7.540 5.286 -6.131 11.062 hybrid contribution 0.752 -1.246 1.096 1.822 sum -6.787 4.040 -5.034 9.367 Atomic orbital electron populations 1.21696 0.90688 1.02779 1.03712 1.21309 0.99225 0.97572 0.94528 1.21655 1.00472 0.93352 1.03293 1.21350 0.76051 0.80428 0.91057 1.90585 1.57015 1.66676 1.34676 1.50335 1.60834 1.06893 1.18831 1.23544 0.99045 0.84685 0.92963 1.20168 0.81826 0.91866 0.88543 1.85996 1.17425 1.71871 1.64460 1.21822 1.07235 0.92273 1.37822 0.90049 1.25879 0.94390 1.03930 0.93284 1.69421 1.10595 1.38046 1.38347 0.85322 0.78789 0.78684 0.77450 1.19921 1.21210 1.18702 1.24074 0.95699 0.87687 0.96714 0.88180 0.92283 0.93027 0.88077 0.93933 0.88367 0.92918 0.89185 0.86955 0.75843 0.91570 0.90304 0.94607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 9.18 71.98 0.66 -2.31 16 2 C -0.11 -3.04 3.10 -11.54 -0.04 -3.07 16 3 C -0.13 -3.39 8.84 71.98 0.64 -2.75 16 4 C 0.52 21.34 7.07 87.66 0.62 21.96 16 5 O -0.61 -29.62 16.98 -3.03 -0.05 -29.67 16 6 N -0.64 -27.19 3.61 -840.34 -3.03 -30.22 16 7 C 0.12 4.57 7.82 86.48 0.68 5.25 16 8 C 0.22 10.42 1.45 -10.88 -0.02 10.41 16 9 O -0.59 -30.57 13.50 -148.98 -2.01 -32.58 16 10 C -0.55 -27.34 8.62 25.60 0.22 -27.12 16 11 H 0.08 3.76 7.81 -2.91 -0.02 3.74 16 12 C 0.03 1.25 5.39 84.65 0.46 1.71 16 13 N -0.92 -48.43 11.08 21.45 0.24 -48.19 16 14 Si 0.97 39.51 29.54 68.60 2.03 41.53 16 15 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 16 H -0.29 -11.66 7.11 99.48 0.71 -10.96 16 17 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 18 C 0.08 3.95 8.23 86.48 0.71 4.66 16 19 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 20 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 21 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 22 H 0.10 2.64 7.54 -2.38 -0.02 2.62 16 23 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 24 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.05 1.49 7.85 -2.38 -0.02 1.48 16 26 H 0.09 3.10 7.82 -2.39 -0.02 3.08 16 27 H 0.11 3.73 8.09 -2.39 -0.02 3.71 16 28 H 0.39 21.02 6.42 -74.05 -0.48 20.54 16 29 H 0.27 13.67 8.31 -92.70 -0.77 12.90 16 30 H 0.08 3.70 8.09 -2.39 -0.02 3.68 16 31 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -62.14 266.50 1.74 -60.40 By element: Atomic # 1 Polarization: 29.35 SS G_CDS: 0.64 Total: 29.99 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 3.93 Total: 8.73 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -2.79 Total: -78.41 kcal Atomic # 8 Polarization: -60.19 SS G_CDS: -2.06 Total: -62.25 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.53 kcal Total: -62.14 1.74 -60.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306926132.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.811 kcal (2) G-P(sol) polarization free energy of solvation -62.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds