Wall clock time and date at job start Sun Mar 29 2020 21:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.37090 * 120.00298 * 2 1 4 4 H 1.08000 * 120.00223 * 205.14961 * 3 2 1 5 5 C 1.38952 * 119.99875 * 25.13800 * 3 2 1 6 6 N 1.31411 * 119.99934 * 11.74685 * 5 3 2 7 7 Si 1.86803 * 119.99837 * 191.74175 * 5 3 2 8 8 H 1.48494 * 109.47183 * 90.00636 * 7 5 3 9 9 H 1.48506 * 109.46944 * 210.00591 * 7 5 3 10 10 H 1.48498 * 109.47186 * 330.00531 * 7 5 3 11 11 C 1.34773 * 119.99567 * 179.97438 * 2 1 3 12 12 O 1.21291 * 119.99801 * 180.02562 * 11 2 1 13 13 C 1.50697 * 120.00489 * 0.02562 * 11 2 1 14 14 H 1.08996 * 110.49052 * 40.69602 * 13 11 2 15 15 C 1.54102 * 110.54863 * 277.99849 * 13 11 2 16 16 N 1.47052 * 103.86595 * 241.26037 * 15 13 11 17 17 C 1.33949 * 109.17631 * 359.97438 * 16 15 13 18 18 O 1.21588 * 123.04107 * 179.97438 * 17 16 15 19 19 N 1.33947 * 113.91641 * 0.02562 * 17 16 15 20 20 H 1.08996 * 109.46762 * 265.07683 * 1 2 3 21 21 H 1.09000 * 109.46713 * 25.07295 * 1 2 3 22 22 H 1.08999 * 109.46696 * 145.07405 * 1 2 3 23 23 H 0.97003 * 119.99931 * 179.97438 * 6 5 3 24 24 H 1.08994 * 110.55063 * 359.85406 * 15 13 11 25 25 H 1.09000 * 110.54897 * 122.66540 * 15 13 11 26 26 H 0.96998 * 125.41777 * 180.02562 * 16 15 13 27 27 H 0.97004 * 125.40787 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1506 1.1872 0.0000 4 1 3.1538 1.2315 -0.3975 5 6 1.5546 2.3336 0.5112 6 7 0.4387 2.2430 1.1993 7 14 2.3396 4.0035 0.2203 8 1 1.8082 4.5880 -1.0370 9 1 2.0227 4.9043 1.3577 10 1 3.8120 3.8457 0.1093 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1673 0.0010 13 6 1.3854 -2.4723 0.0005 14 1 0.5245 -2.4158 -0.6656 15 6 0.9405 -2.8400 1.4294 16 7 1.6200 -4.1174 1.6923 17 6 2.3434 -4.4602 0.6183 18 8 3.0089 -5.4762 0.5640 19 7 2.2680 -3.5817 -0.3901 20 1 -0.3633 -0.0882 1.0239 21 1 -0.3633 0.9308 -0.4355 22 1 -0.3633 -0.8426 -0.5884 23 1 0.0228 3.0432 1.5565 24 1 1.2668 -2.0800 2.1392 25 1 -0.1413 -2.9661 1.4727 26 1 1.5542 -4.6306 2.5127 27 1 2.7229 -3.6646 -1.2429 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306988569.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:12 Heat of formation + Delta-G solvation = -37.745061 kcal Electronic energy + Delta-G solvation = -14474.275346 eV Core-core repulsion = 11847.233572 eV Total energy + Delta-G solvation = -2627.041774 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.79111 -38.28254 -35.80071 -34.77263 -32.60896 -31.80218 -28.85596 -26.34465 -24.81579 -22.99291 -21.42573 -19.43233 -17.38177 -17.08316 -16.68324 -15.93324 -15.15118 -14.68994 -14.39167 -14.19756 -13.62404 -13.47901 -12.98331 -12.38433 -12.17982 -11.65910 -11.41804 -11.33648 -10.95749 -10.43470 -10.39790 -9.97273 -9.31114 -9.13010 -8.97179 -8.16657 -7.80750 -6.45201 -4.02788 3.04267 3.13692 3.19437 3.24379 3.48204 3.65236 3.99752 4.26741 4.73969 4.76063 5.05236 5.24348 5.43056 5.62040 5.88851 5.97322 6.21003 6.68522 7.04544 7.26225 7.45203 7.48486 7.69221 8.00319 8.34173 8.94234 9.05024 9.25387 9.80145 10.59049 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.063259 B = 0.008291 C = 0.007798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.521175 B = 3376.505953 C = 3589.934906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.437 5.437 3 C -0.308 4.308 4 H 0.099 0.901 5 C 0.034 3.966 6 N -0.880 5.880 7 Si 0.928 3.072 8 H -0.277 1.277 9 H -0.283 1.283 10 H -0.269 1.269 11 C 0.431 3.569 12 O -0.573 6.573 13 C 0.107 3.893 14 H 0.102 0.898 15 C 0.108 3.892 16 N -0.741 5.741 17 C 0.706 3.294 18 O -0.602 6.602 19 N -0.712 5.712 20 H 0.055 0.945 21 H 0.078 0.922 22 H 0.027 0.973 23 H 0.269 0.731 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.427 0.573 27 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.795 -4.272 -0.498 7.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.156 5.156 3 C -0.436 4.436 4 H 0.116 0.884 5 C -0.170 4.170 6 N -0.518 5.518 7 Si 0.754 3.246 8 H -0.203 1.203 9 H -0.209 1.209 10 H -0.193 1.193 11 C 0.217 3.783 12 O -0.457 6.457 13 C -0.003 4.003 14 H 0.120 0.880 15 C -0.018 4.018 16 N -0.403 5.403 17 C 0.405 3.595 18 O -0.482 6.482 19 N -0.372 5.372 20 H 0.074 0.926 21 H 0.097 0.903 22 H 0.046 0.954 23 H 0.079 0.921 24 H 0.106 0.894 25 H 0.105 0.895 26 H 0.268 0.732 27 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -5.018 -4.594 -0.437 6.817 hybrid contribution 0.173 0.918 -0.004 0.935 sum -4.844 -3.676 -0.440 6.097 Atomic orbital electron populations 1.21615 0.81109 1.00444 1.00720 1.43593 1.05514 1.04539 1.61986 1.19667 1.01175 0.84065 1.38708 0.88372 1.25365 0.96544 1.00247 0.94847 1.69960 1.19037 1.29991 1.32849 0.85897 0.79766 0.81035 0.77881 1.20268 1.20854 1.19303 1.20095 0.88332 0.84519 0.85348 1.90571 1.13552 1.86496 1.55058 1.21872 0.93512 0.88438 0.96451 0.88042 1.22251 0.97845 0.86367 0.95330 1.45031 1.52230 1.25329 1.17742 1.15851 0.79674 0.82977 0.80977 1.90936 1.47020 1.27621 1.82600 1.44790 1.52463 1.22013 1.17929 0.92629 0.90296 0.95421 0.92053 0.89350 0.89509 0.73216 0.72910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.04 8.34 59.85 0.50 2.54 15 2 N -0.44 -10.25 3.01 -122.19 -0.37 -10.62 15 3 C -0.31 -8.11 9.23 -14.94 -0.14 -8.25 15 4 H 0.10 2.75 7.46 -52.49 -0.39 2.36 15 5 C 0.03 0.84 5.06 -17.47 -0.09 0.75 15 6 N -0.88 -21.86 10.83 55.50 0.60 -21.26 15 7 Si 0.93 19.82 29.57 -169.99 -5.03 14.80 15 8 H -0.28 -5.78 7.11 56.52 0.40 -5.38 15 9 H -0.28 -5.99 7.11 56.52 0.40 -5.59 15 10 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 11 C 0.43 9.75 6.74 -10.99 -0.07 9.67 15 12 O -0.57 -15.48 16.31 5.55 0.09 -15.39 15 13 C 0.11 1.82 3.35 -68.21 -0.23 1.59 15 14 H 0.10 1.42 6.45 -51.93 -0.33 1.09 15 15 C 0.11 1.57 7.57 -3.17 -0.02 1.54 15 16 N -0.74 -11.18 6.37 -64.70 -0.41 -11.59 15 17 C 0.71 13.19 8.92 -88.40 -0.79 12.41 15 18 O -0.60 -13.18 18.05 5.29 0.10 -13.09 15 19 N -0.71 -12.51 5.63 -59.33 -0.33 -12.84 15 20 H 0.06 1.08 7.85 -51.93 -0.41 0.67 15 21 H 0.08 1.67 6.78 -51.93 -0.35 1.32 15 22 H 0.03 0.42 6.19 -51.93 -0.32 0.10 15 23 H 0.27 6.37 8.31 -40.82 -0.34 6.03 15 24 H 0.09 1.43 7.72 -51.93 -0.40 1.03 15 25 H 0.09 0.95 8.14 -51.93 -0.42 0.53 15 26 H 0.43 5.26 8.96 -40.82 -0.37 4.89 15 27 H 0.43 7.09 8.96 -40.82 -0.37 6.72 15 LS Contribution 237.12 15.07 3.57 3.57 Total: -1.00 -32.71 237.12 -5.12 -37.83 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -2.50 Total: 8.33 kcal Atomic # 6 Polarization: 21.10 SS G_CDS: -0.84 Total: 20.26 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.51 Total: -56.31 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: 0.19 Total: -28.47 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.80 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -32.71 -5.12 -37.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306988569.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.081 kcal (2) G-P(sol) polarization free energy of solvation -32.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds