Wall clock time and date at job start Sun Mar 29 2020 21:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.37090 * 120.00298 * 2 1 4 4 H 1.08000 * 120.00223 * 205.14961 * 3 2 1 5 5 C 1.38952 * 119.99875 * 25.13800 * 3 2 1 6 6 N 1.31411 * 119.99934 * 11.74685 * 5 3 2 7 7 Si 1.86803 * 119.99837 * 191.74175 * 5 3 2 8 8 H 1.48494 * 109.47183 * 90.00636 * 7 5 3 9 9 H 1.48506 * 109.46944 * 210.00591 * 7 5 3 10 10 H 1.48498 * 109.47186 * 330.00531 * 7 5 3 11 11 C 1.34773 * 119.99567 * 179.97438 * 2 1 3 12 12 O 1.21291 * 119.99801 * 180.02562 * 11 2 1 13 13 C 1.50697 * 120.00489 * 0.02562 * 11 2 1 14 14 H 1.08996 * 110.49052 * 40.69602 * 13 11 2 15 15 C 1.54102 * 110.54863 * 277.99849 * 13 11 2 16 16 N 1.47052 * 103.86595 * 241.26037 * 15 13 11 17 17 C 1.33949 * 109.17631 * 359.97438 * 16 15 13 18 18 O 1.21588 * 123.04107 * 179.97438 * 17 16 15 19 19 N 1.33947 * 113.91641 * 0.02562 * 17 16 15 20 20 H 1.08996 * 109.46762 * 265.07683 * 1 2 3 21 21 H 1.09000 * 109.46713 * 25.07295 * 1 2 3 22 22 H 1.08999 * 109.46696 * 145.07405 * 1 2 3 23 23 H 0.97003 * 119.99931 * 179.97438 * 6 5 3 24 24 H 1.08994 * 110.55063 * 359.85406 * 15 13 11 25 25 H 1.09000 * 110.54897 * 122.66540 * 15 13 11 26 26 H 0.96998 * 125.41777 * 180.02562 * 16 15 13 27 27 H 0.97004 * 125.40787 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1506 1.1872 0.0000 4 1 3.1538 1.2315 -0.3975 5 6 1.5546 2.3336 0.5112 6 7 0.4387 2.2430 1.1993 7 14 2.3396 4.0035 0.2203 8 1 1.8082 4.5880 -1.0370 9 1 2.0227 4.9043 1.3577 10 1 3.8120 3.8457 0.1093 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1673 0.0010 13 6 1.3854 -2.4723 0.0005 14 1 0.5245 -2.4158 -0.6656 15 6 0.9405 -2.8400 1.4294 16 7 1.6200 -4.1174 1.6923 17 6 2.3434 -4.4602 0.6183 18 8 3.0089 -5.4762 0.5640 19 7 2.2680 -3.5817 -0.3901 20 1 -0.3633 -0.0882 1.0239 21 1 -0.3633 0.9308 -0.4355 22 1 -0.3633 -0.8426 -0.5884 23 1 0.0228 3.0432 1.5565 24 1 1.2668 -2.0800 2.1392 25 1 -0.1413 -2.9661 1.4727 26 1 1.5542 -4.6306 2.5127 27 1 2.7229 -3.6646 -1.2429 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306988569.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:11 Heat of formation + Delta-G solvation = -65.378013 kcal Electronic energy + Delta-G solvation = -14475.473601 eV Core-core repulsion = 11847.233572 eV Total energy + Delta-G solvation = -2628.240029 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.090 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.20943 -40.00839 -37.33505 -36.61313 -33.95677 -33.67465 -30.32892 -28.02761 -26.51086 -24.45289 -22.78695 -21.08644 -18.91600 -18.79373 -18.31610 -17.30132 -16.87795 -16.27191 -16.03951 -15.84078 -15.14063 -14.95777 -14.47405 -13.99667 -13.61935 -13.35105 -13.10363 -12.98245 -12.61292 -12.28071 -12.14129 -11.51315 -10.98375 -10.93630 -10.41266 -9.68295 -9.65304 -8.34272 -5.99844 1.36924 1.44073 1.53976 1.73953 1.94752 2.11479 2.28807 2.83810 3.05571 3.21946 3.51840 3.88642 4.02952 4.42327 4.65556 4.68357 4.82908 5.12615 5.46033 5.47022 5.94164 6.08864 6.27903 6.32660 6.49375 7.16464 7.43731 7.56794 7.99560 8.67010 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.063259 B = 0.008291 C = 0.007798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.521175 B = 3376.505953 C = 3589.934906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.448 5.448 3 C -0.345 4.345 4 H 0.066 0.934 5 C 0.007 3.993 6 N -0.886 5.886 7 Si 0.983 3.017 8 H -0.265 1.265 9 H -0.274 1.274 10 H -0.281 1.281 11 C 0.423 3.577 12 O -0.630 6.630 13 C 0.116 3.884 14 H 0.145 0.855 15 C 0.112 3.888 16 N -0.726 5.726 17 C 0.698 3.302 18 O -0.640 6.640 19 N -0.712 5.712 20 H 0.057 0.943 21 H 0.058 0.942 22 H 0.077 0.923 23 H 0.275 0.725 24 H 0.072 0.928 25 H 0.140 0.860 26 H 0.440 0.560 27 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.800 -4.257 -0.294 8.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.166 5.166 3 C -0.474 4.474 4 H 0.084 0.916 5 C -0.196 4.196 6 N -0.524 5.524 7 Si 0.807 3.193 8 H -0.190 1.190 9 H -0.199 1.199 10 H -0.207 1.207 11 C 0.211 3.789 12 O -0.517 6.517 13 C 0.007 3.993 14 H 0.162 0.838 15 C -0.013 4.013 16 N -0.389 5.389 17 C 0.396 3.604 18 O -0.523 6.523 19 N -0.371 5.371 20 H 0.075 0.925 21 H 0.077 0.923 22 H 0.095 0.905 23 H 0.085 0.915 24 H 0.090 0.910 25 H 0.158 0.842 26 H 0.284 0.716 27 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -7.093 -4.565 -0.211 8.438 hybrid contribution 0.798 0.938 -0.046 1.233 sum -6.295 -3.627 -0.257 7.269 Atomic orbital electron populations 1.21684 0.78624 1.01542 1.01555 1.43814 1.07090 1.04065 1.61638 1.19536 1.00837 0.86281 1.40722 0.91629 1.25952 0.96964 1.02496 0.94199 1.70000 1.19177 1.30960 1.32273 0.85086 0.78151 0.77597 0.78442 1.18979 1.19860 1.20673 1.21079 0.88057 0.86188 0.83594 1.90536 1.16298 1.87644 1.57222 1.21959 0.93434 0.84809 0.99145 0.83829 1.22421 1.00569 0.85315 0.93039 1.44971 1.51243 1.25329 1.17335 1.16092 0.79761 0.82719 0.81806 1.90905 1.48695 1.29320 1.83379 1.44858 1.52586 1.21781 1.17918 0.92480 0.92326 0.90464 0.91504 0.91013 0.84192 0.71630 0.72730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.95 8.34 127.77 1.07 5.02 15 2 N -0.45 -20.73 3.01 -658.89 -1.98 -22.71 15 3 C -0.35 -18.48 9.23 84.04 0.78 -17.71 15 4 H 0.07 3.85 7.46 -2.91 -0.02 3.83 15 5 C 0.01 0.35 5.06 84.93 0.43 0.78 15 6 N -0.89 -43.00 10.83 21.66 0.23 -42.77 15 7 Si 0.98 40.40 29.57 68.60 2.03 42.43 15 8 H -0.26 -10.33 7.11 99.48 0.71 -9.63 15 9 H -0.27 -10.78 7.11 99.48 0.71 -10.07 15 10 H -0.28 -12.07 7.11 99.48 0.71 -11.37 15 11 C 0.42 18.89 6.74 87.66 0.59 19.48 15 12 O -0.63 -34.82 16.31 -3.06 -0.05 -34.87 15 13 C 0.12 3.60 3.35 44.51 0.15 3.75 15 14 H 0.14 3.30 6.45 -2.39 -0.02 3.28 15 15 C 0.11 2.84 7.57 86.65 0.66 3.50 15 16 N -0.73 -20.01 6.37 -477.35 -3.04 -23.05 15 17 C 0.70 25.03 8.92 179.57 1.60 26.63 15 18 O -0.64 -27.70 18.05 -3.99 -0.07 -27.77 15 19 N -0.71 -23.92 5.63 -460.36 -2.59 -26.51 15 20 H 0.06 2.05 7.85 -2.39 -0.02 2.04 15 21 H 0.06 2.37 6.78 -2.39 -0.02 2.36 15 22 H 0.08 2.01 6.19 -2.39 -0.01 1.99 15 23 H 0.28 12.56 8.31 -92.71 -0.77 11.79 15 24 H 0.07 2.14 7.72 -2.39 -0.02 2.12 15 25 H 0.14 2.22 8.14 -2.39 -0.02 2.20 15 26 H 0.44 9.70 8.96 -92.71 -0.83 8.87 15 27 H 0.43 13.91 8.96 -92.71 -0.83 13.08 15 Total: -1.00 -72.65 237.12 -0.64 -73.30 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -0.44 Total: 20.49 kcal Atomic # 6 Polarization: 36.19 SS G_CDS: 5.27 Total: 41.46 kcal Atomic # 7 Polarization: -107.65 SS G_CDS: -7.38 Total: -115.03 kcal Atomic # 8 Polarization: -62.52 SS G_CDS: -0.12 Total: -62.64 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Total: -72.65 -0.64 -73.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306988569.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.917 kcal (2) G-P(sol) polarization free energy of solvation -72.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds