Wall clock time and date at job start Sun Mar 29 2020 21:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.32030 * 120.39719 * 2 1 4 4 N 1.28703 * 120.55810 * 180.02562 * 3 2 1 5 5 C 1.32746 * 121.42087 * 0.02562 * 4 3 2 6 6 S 1.76201 * 119.61871 * 180.02562 * 5 4 3 7 7 C 1.76204 * 99.99950 * 359.97438 * 6 5 4 8 8 H 1.08001 * 119.99827 * 359.97438 * 7 6 5 9 9 C 1.38784 * 119.99692 * 180.02562 * 7 6 5 10 10 N 1.31565 * 120.00425 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99918 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47113 * 59.99697 * 11 9 7 13 13 H 1.48498 * 109.47006 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46948 * 299.99765 * 11 9 7 15 15 N 1.32766 * 120.76216 * 0.02562 * 5 4 3 16 16 C 1.32834 * 119.36811 * 359.97438 * 15 5 4 17 17 O 1.35525 * 120.65519 * 179.72957 * 16 15 5 18 18 H 1.08996 * 109.47890 * 269.97919 * 1 2 3 19 19 H 1.09008 * 109.46993 * 29.97877 * 1 2 3 20 20 H 1.09005 * 109.47200 * 149.97231 * 1 2 3 21 21 H 0.97001 * 120.00426 * 180.02562 * 10 9 7 22 22 H 0.96702 * 113.99883 * 89.99842 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1750 1.1388 0.0000 4 7 3.4620 1.1424 -0.0005 5 6 4.1572 0.0116 -0.0015 6 16 5.9182 0.0719 -0.0015 7 6 6.1645 1.8167 -0.0007 8 1 5.3139 2.4821 -0.0008 9 6 7.4517 2.3357 -0.0010 10 7 8.4879 1.5250 -0.0013 11 14 7.7129 4.1854 0.0006 12 1 7.0896 4.7723 1.2140 13 1 9.1684 4.4797 0.0006 14 1 7.0883 4.7745 -1.2110 15 7 3.5410 -1.1644 -0.0026 16 6 2.2132 -1.2041 -0.0021 17 8 1.5574 -2.3900 -0.0087 18 1 -0.3635 -0.0004 1.0276 19 1 -0.3633 0.8902 -0.5135 20 1 -0.3634 -0.8898 -0.5143 21 1 9.3875 1.8878 -0.0012 22 1 1.3675 -2.7394 0.8728 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307013376.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:30 Heat of formation + Delta-G solvation = -6.974014 kcal Electronic energy + Delta-G solvation = -11502.565548 eV Core-core repulsion = 9183.777883 eV Total energy + Delta-G solvation = -2318.787665 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.031 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.61356 -38.94823 -35.72150 -34.83467 -33.94788 -29.65881 -27.80197 -26.07164 -24.76320 -20.72932 -20.41760 -19.46593 -17.86665 -17.03959 -16.89357 -16.09467 -15.63030 -14.94426 -14.08229 -13.85427 -13.39442 -13.21319 -13.13915 -13.10892 -12.99712 -12.50303 -12.16017 -11.75119 -11.49604 -11.18883 -10.90708 -10.13082 -9.03380 -8.58787 -6.40857 -0.53945 -0.30659 0.71288 1.37155 1.42742 1.51217 1.96220 2.17280 2.34044 2.84743 2.94058 3.13045 3.34756 3.80483 4.04863 4.62896 4.78595 4.94354 5.26463 5.42550 5.76449 6.19225 6.41632 6.88030 7.49867 8.49721 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.057387 B = 0.008556 C = 0.007481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.800903 B = 3271.772760 C = 3741.907706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.034 4.034 3 N -0.198 5.198 4 N -0.327 5.327 5 C 0.211 3.789 6 S 0.164 5.836 7 C -0.574 4.574 8 H 0.100 0.900 9 C 0.035 3.965 10 N -0.898 5.898 11 Si 1.000 3.000 12 H -0.264 1.264 13 H -0.266 1.266 14 H -0.265 1.265 15 N -0.515 5.515 16 C 0.359 3.641 17 O -0.458 6.458 18 H 0.104 0.896 19 H 0.082 0.918 20 H 0.104 0.896 21 H 0.284 0.716 22 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.613 -3.904 1.916 13.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.194 4.194 3 N -0.049 5.049 4 N -0.182 5.182 5 C -0.161 4.161 6 S 0.405 5.595 7 C -0.723 4.723 8 H 0.118 0.882 9 C -0.173 4.173 10 N -0.533 5.533 11 Si 0.821 3.179 12 H -0.189 1.189 13 H -0.190 1.190 14 H -0.190 1.190 15 N -0.249 5.249 16 C 0.154 3.846 17 O -0.268 6.268 18 H 0.122 0.878 19 H 0.101 0.899 20 H 0.122 0.878 21 H 0.094 0.906 22 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges -10.811 -3.892 1.339 11.568 hybrid contribution -0.835 0.781 0.399 1.211 sum -11.646 -3.111 1.738 12.179 Atomic orbital electron populations 1.20644 0.82700 1.05257 1.05115 1.24269 1.02366 0.89716 1.03035 1.73268 1.01228 1.25814 1.04547 1.74094 1.00682 1.25143 1.18284 1.27274 1.05883 0.86797 0.96147 1.83613 0.84082 1.11218 1.80556 1.23666 0.96923 0.91799 1.59870 0.88166 1.26087 0.93764 1.05335 0.92076 1.69989 0.99774 1.37943 1.45563 0.84973 0.77858 0.75441 0.79637 1.18863 1.18981 1.19012 1.68651 1.11160 1.28363 1.16771 1.20234 0.87052 0.87952 0.89373 1.84653 1.73277 1.32446 1.36411 0.87772 0.89874 0.87751 0.90611 0.70195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.49 10.02 71.23 0.71 -0.77 14 2 C -0.03 -1.08 6.90 42.85 0.30 -0.79 14 3 N -0.20 -8.25 11.55 -46.99 -0.54 -8.80 14 4 N -0.33 -16.18 9.63 -58.29 -0.56 -16.74 14 5 C 0.21 10.33 7.91 180.30 1.43 11.75 14 6 S 0.16 8.76 21.84 -56.49 -1.23 7.53 14 7 C -0.57 -32.63 9.25 67.95 0.63 -32.00 14 8 H 0.10 5.79 6.53 -2.91 -0.02 5.77 14 9 C 0.03 1.89 5.49 84.86 0.47 2.35 14 10 N -0.90 -50.23 13.22 21.64 0.29 -49.95 14 11 Si 1.00 42.74 29.55 68.60 2.03 44.77 14 12 H -0.26 -11.02 7.11 99.48 0.71 -10.32 14 13 H -0.27 -10.56 7.11 99.48 0.71 -9.85 14 14 H -0.27 -11.15 7.11 99.48 0.71 -10.44 14 15 N -0.51 -22.01 10.54 -308.75 -3.25 -25.26 14 16 C 0.36 11.89 7.81 84.87 0.66 12.56 14 17 O -0.46 -10.26 12.73 -88.28 -1.12 -11.39 14 18 H 0.10 1.46 8.14 -2.39 -0.02 1.44 14 19 H 0.08 1.57 8.14 -2.38 -0.02 1.55 14 20 H 0.10 1.51 7.60 -2.38 -0.02 1.50 14 21 H 0.28 14.61 8.31 -92.71 -0.77 13.84 14 22 H 0.43 4.47 9.06 -74.06 -0.67 3.80 14 Total: -1.00 -69.83 225.54 0.39 -69.44 By element: Atomic # 1 Polarization: -3.31 SS G_CDS: 0.60 Total: -2.70 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: 4.19 Total: -6.90 kcal Atomic # 7 Polarization: -96.67 SS G_CDS: -4.07 Total: -100.74 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -1.12 Total: -11.39 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: 8.76 SS G_CDS: -1.23 Total: 7.53 kcal Total: -69.83 0.39 -69.44 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307013376.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.464 kcal (2) G-P(sol) polarization free energy of solvation -69.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds