Wall clock time and date at job start Sun Mar 29 2020 21:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31589 * 1 3 3 Si 1.86809 * 119.99863 * 2 1 4 4 H 1.48498 * 109.47050 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47007 * 300.00587 * 3 2 1 6 6 H 1.48501 * 109.46700 * 60.00721 * 3 2 1 7 7 C 1.38792 * 120.00422 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00171 * 180.02562 * 7 2 1 9 9 N 1.36844 * 119.99790 * 359.97438 * 7 2 1 10 10 C 1.39307 * 120.00481 * 180.02562 * 9 7 2 11 11 C 1.39106 * 120.08353 * 0.02562 * 10 9 7 12 12 C 1.38029 * 119.90769 * 179.97438 * 11 10 9 13 13 C 1.38350 * 120.08738 * 0.28022 * 12 11 10 14 14 C 1.38308 * 120.18395 * 359.44517 * 13 12 11 15 15 C 1.50695 * 119.96108 * 180.29861 * 14 13 12 16 16 F 1.39897 * 109.47500 * 120.25221 * 15 14 13 17 17 F 1.39902 * 109.47193 * 240.25449 * 15 14 13 18 18 C 1.38081 * 120.08584 * 0.55383 * 14 13 12 19 19 H 0.96999 * 119.99927 * 359.97438 * 1 2 3 20 20 H 0.97004 * 120.00337 * 0.02562 * 9 7 2 21 21 H 1.07999 * 120.04638 * 359.97438 * 11 10 9 22 22 H 1.08002 * 119.95161 * 179.97438 * 12 11 10 23 23 H 1.08005 * 119.90491 * 179.71660 * 13 12 11 24 24 H 1.09004 * 109.46755 * 0.25154 * 15 14 13 25 25 H 1.08000 * 120.04559 * 179.75038 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6178 0.0000 4 1 3.7099 1.3465 -0.0006 5 1 1.8910 2.3966 -1.2124 6 1 1.8912 2.3964 1.2126 7 6 2.0099 -1.2019 -0.0005 8 1 3.0899 -1.2019 -0.0001 9 7 1.3258 -2.3871 -0.0005 10 6 2.0222 -3.5935 -0.0005 11 6 3.4133 -3.5956 0.0000 12 6 4.0997 -4.7931 0.0005 13 6 3.4061 -5.9902 -0.0053 14 6 2.0230 -5.9924 -0.0002 15 6 1.2726 -7.2993 0.0002 16 9 0.4683 -7.3749 1.1424 17 9 0.4686 -7.3757 -1.1421 18 6 1.3288 -4.7988 -0.0007 19 1 -0.4850 0.8400 0.0004 20 1 0.3557 -2.3872 -0.0005 21 1 3.9555 -2.6616 0.0000 22 1 5.1797 -4.7956 0.0005 23 1 3.9462 -6.9255 -0.0095 24 1 1.9829 -8.1261 0.0006 25 1 0.2488 -4.8014 -0.0007 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307068128.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:29 Heat of formation + Delta-G solvation = -82.215430 kcal Electronic energy + Delta-G solvation = -13431.120265 eV Core-core repulsion = 10658.769844 eV Total energy + Delta-G solvation = -2772.350421 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 213.066 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.55281 -46.54978 -38.48395 -35.21784 -32.08943 -30.82523 -28.43036 -25.44060 -24.61588 -21.56560 -20.55250 -17.77898 -17.18192 -16.77714 -16.74722 -15.28994 -15.12064 -14.47157 -14.01392 -13.50603 -13.09672 -12.94844 -12.81930 -12.46862 -12.32005 -11.74705 -11.31226 -11.30679 -10.67405 -10.55827 -10.36594 -10.33793 -9.87369 -8.84139 -8.19598 -6.85344 -6.63663 -3.82153 2.09419 2.43591 3.10846 3.12952 3.16801 3.98448 4.21152 4.49394 4.66061 4.98619 5.10524 5.27946 5.53792 5.75669 5.94114 6.22914 6.38211 6.74541 6.78047 7.13333 7.24363 7.34470 7.42576 7.62288 7.92223 8.67799 9.25779 9.45381 10.52924 Molecular weight = 213.07amu Principal moments of inertia in cm(-1) A = 0.049218 B = 0.007400 C = 0.006702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.764016 B = 3782.789294 C = 4177.059984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.020 3.980 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.303 4.303 8 H 0.104 0.896 9 N -0.557 5.557 10 C 0.205 3.795 11 C -0.209 4.209 12 C -0.063 4.063 13 C -0.224 4.224 14 C -0.111 4.111 15 C 0.313 3.687 16 F -0.207 7.207 17 F -0.207 7.207 18 C -0.200 4.200 19 H 0.275 0.725 20 H 0.400 0.600 21 H 0.118 0.882 22 H 0.108 0.892 23 H 0.104 0.896 24 H 0.109 0.891 25 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.307 -8.219 0.002 9.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.184 4.184 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.432 4.432 8 H 0.121 0.879 9 N -0.158 5.158 10 C 0.083 3.917 11 C -0.234 4.234 12 C -0.082 4.082 13 C -0.247 4.247 14 C -0.113 4.113 15 C 0.259 3.741 16 F -0.188 7.188 17 F -0.188 7.188 18 C -0.225 4.225 19 H 0.085 0.915 20 H 0.235 0.765 21 H 0.136 0.864 22 H 0.126 0.874 23 H 0.122 0.878 24 H 0.127 0.873 25 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.109 -7.700 0.001 8.728 hybrid contribution -0.253 0.881 0.002 0.917 sum 3.857 -6.819 0.003 7.834 Atomic orbital electron populations 1.69693 1.06049 1.28577 1.48353 1.25328 0.95753 1.00008 0.97268 0.85738 0.79399 0.80832 0.78044 1.19129 1.20500 1.20497 1.19796 0.93130 0.82672 1.47651 0.87854 1.41047 1.08176 1.01955 1.64625 1.17752 0.91733 0.85888 0.96341 1.20544 0.92538 0.97844 1.12434 1.20562 0.98153 0.92033 0.97498 1.20024 0.91958 0.97412 1.15303 1.19650 0.94396 0.92440 1.04805 1.20490 0.84301 0.98454 0.70850 1.92971 1.76618 1.97552 1.51679 1.92973 1.76633 1.97549 1.51672 1.19985 0.98399 0.90799 1.13321 0.91463 0.76488 0.86402 0.87429 0.87819 0.87319 0.87451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.83 13.05 55.49 0.72 -23.11 15 2 C 0.02 0.51 5.50 -17.45 -0.10 0.41 15 3 Si 0.93 19.69 29.55 -169.99 -5.02 14.67 15 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15 6 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15 7 C -0.30 -7.75 9.56 -15.11 -0.14 -7.90 15 8 H 0.10 2.53 5.68 -52.49 -0.30 2.23 15 9 N -0.56 -13.87 5.43 -9.60 -0.05 -13.92 15 10 C 0.20 4.68 6.62 -83.84 -0.55 4.12 15 11 C -0.21 -4.40 9.30 -39.34 -0.37 -4.77 15 12 C -0.06 -1.14 10.04 -39.62 -0.40 -1.54 15 13 C -0.22 -3.89 9.67 -39.51 -0.38 -4.27 15 14 C -0.11 -2.07 5.37 -104.66 -0.56 -2.63 15 15 C 0.31 4.94 5.45 36.00 0.20 5.14 15 16 F -0.21 -3.54 17.26 2.25 0.04 -3.50 15 17 F -0.21 -3.54 17.26 2.25 0.04 -3.50 15 18 C -0.20 -4.25 9.45 -39.34 -0.37 -4.62 15 19 H 0.28 6.94 8.31 -40.82 -0.34 6.60 15 20 H 0.40 10.18 7.90 -40.82 -0.32 9.86 15 21 H 0.12 2.47 5.96 -52.49 -0.31 2.15 15 22 H 0.11 1.62 8.06 -52.49 -0.42 1.19 15 23 H 0.10 1.46 7.94 -52.48 -0.42 1.04 15 24 H 0.11 1.28 7.87 -51.93 -0.41 0.87 15 25 H 0.11 2.25 8.06 -52.49 -0.42 1.83 15 LS Contribution 234.60 15.07 3.54 3.54 Total: -1.00 -26.97 234.60 -5.16 -32.12 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -1.74 Total: 9.78 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -2.68 Total: -16.07 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.67 Total: -37.03 kcal Atomic # 9 Polarization: -7.08 SS G_CDS: 0.08 Total: -7.00 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -26.97 -5.16 -32.12 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307068128.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.091 kcal (2) G-P(sol) polarization free energy of solvation -26.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds