Wall clock time and date at job start Sun Mar 29 2020 21:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.38472 * 120.00160 * 179.97438 * 10 9 7 12 12 N 1.32484 * 119.19663 * 359.73103 * 11 10 9 13 13 C 1.32286 * 120.74775 * 179.75475 * 12 11 10 14 14 C 1.38700 * 119.17974 * 0.51244 * 13 12 11 15 15 Cl 1.73604 * 120.72720 * 179.72609 * 14 13 12 16 16 C 1.38693 * 118.53948 * 359.74490 * 14 13 12 17 17 N 1.32289 * 119.17978 * 359.97438 * 16 14 13 18 18 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 20 20 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 21 21 H 0.97000 * 120.00420 * 0.02562 * 10 9 7 22 22 H 1.07993 * 120.40870 * 180.25343 * 13 12 11 23 23 H 1.07996 * 120.41361 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7413 -4.9182 0.0011 12 7 0.4356 -5.1420 0.0070 13 6 -0.0390 -6.3768 0.0028 14 6 0.8488 -7.4425 0.0029 15 17 0.2700 -9.0792 0.0047 16 6 2.2090 -7.1717 0.0020 17 7 2.6161 -5.9130 0.0006 18 1 -0.4850 0.8401 0.0004 19 1 0.6239 -2.5567 0.8903 20 1 0.6246 -2.5571 -0.8897 21 1 3.1566 -3.4355 0.0009 22 1 -1.1045 -6.5530 0.0036 23 1 2.9270 -7.9784 0.0025 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307074462.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:43 Heat of formation + Delta-G solvation = 41.274929 kcal Electronic energy + Delta-G solvation = -11321.660270 eV Core-core repulsion = 9002.921130 eV Total energy + Delta-G solvation = -2318.739140 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.036 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.53779 -36.54599 -35.33065 -33.38830 -32.73617 -30.11732 -26.93959 -24.53025 -23.22772 -21.79809 -18.13546 -17.16818 -16.37097 -15.83835 -14.93895 -14.79064 -14.19934 -13.50089 -13.15762 -12.80787 -12.11306 -11.81800 -11.20937 -11.09880 -10.99625 -10.88160 -10.60483 -10.28139 -9.65432 -9.46232 -8.73183 -8.63789 -7.33295 -6.23972 -4.30909 1.37405 1.41728 2.28159 3.20652 3.27881 3.31190 3.61938 4.18038 4.28935 4.50035 4.73878 5.12997 5.19409 5.25592 5.88890 6.35934 7.05095 7.23725 7.40157 7.52498 7.67561 7.86742 8.32438 8.63103 8.90116 9.35380 10.86090 Molecular weight = 213.04amu Principal moments of inertia in cm(-1) A = 0.098042 B = 0.005730 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 285.523834 B = 4885.596478 C = 5155.974808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.547 4.547 8 H 0.065 0.935 9 C 0.260 3.740 10 N -0.664 5.664 11 C 0.564 3.436 12 N -0.548 5.548 13 C 0.214 3.786 14 C -0.238 4.238 15 Cl -0.070 7.070 16 C 0.211 3.789 17 N -0.573 5.573 18 H 0.266 0.734 19 H 0.032 0.968 20 H 0.032 0.968 21 H 0.408 0.592 22 H 0.168 0.832 23 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.397 -13.083 -0.001 13.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.138 4.138 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.585 4.585 8 H 0.083 0.917 9 C 0.139 3.861 10 N -0.293 5.293 11 C 0.207 3.793 12 N -0.272 5.272 13 C 0.042 3.958 14 C -0.275 4.275 15 Cl -0.042 7.042 16 C 0.040 3.960 17 N -0.297 5.297 18 H 0.076 0.924 19 H 0.050 0.950 20 H 0.050 0.950 21 H 0.245 0.755 22 H 0.185 0.815 23 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.419 -11.796 0.003 11.881 hybrid contribution 0.346 -0.090 -0.003 0.358 sum 1.765 -11.886 0.001 12.016 Atomic orbital electron populations 1.69975 1.06083 1.27350 1.48742 1.24920 0.94945 0.99456 0.94507 0.86324 0.79889 0.82709 0.77803 1.19567 1.20719 1.20712 1.21246 0.93490 0.90255 1.53527 0.91699 1.19255 0.87806 0.80897 0.98143 1.45326 1.11214 1.00635 1.72075 1.19752 0.84888 0.87608 0.87049 1.68251 1.14443 1.22389 1.22070 1.22924 1.00189 0.85549 0.87093 1.22185 0.96458 0.87329 1.21536 1.98317 1.88937 1.19206 1.97746 1.22756 0.92226 0.93291 0.87736 1.68105 1.38475 0.99259 1.23872 0.92403 0.95010 0.95037 0.75514 0.81489 0.81641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.35 13.29 55.43 0.74 -24.61 14 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 14 3 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 14 4 H -0.27 -6.04 7.11 56.52 0.40 -5.63 14 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 14 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 14 7 C -0.55 -14.66 9.28 -34.44 -0.32 -14.98 14 8 H 0.06 1.66 7.60 -52.49 -0.40 1.26 14 9 C 0.26 6.65 5.40 -5.19 -0.03 6.62 14 10 N -0.66 -14.46 5.70 -63.48 -0.36 -14.82 14 11 C 0.56 11.46 8.43 -322.75 -2.72 8.74 14 12 N -0.55 -10.92 9.59 -13.90 -0.13 -11.05 14 13 C 0.21 3.35 11.12 -17.19 -0.19 3.16 14 14 C -0.24 -3.34 6.36 -39.24 -0.25 -3.59 14 15 Cl -0.07 -0.81 29.02 -51.86 -1.50 -2.31 14 16 C 0.21 3.05 11.12 -17.19 -0.19 2.86 14 17 N -0.57 -10.24 10.46 -13.90 -0.15 -10.39 14 18 H 0.27 7.15 8.31 -40.82 -0.34 6.81 14 19 H 0.03 0.89 8.14 -51.93 -0.42 0.46 14 20 H 0.03 0.88 8.14 -51.93 -0.42 0.46 14 21 H 0.41 8.24 8.44 -40.82 -0.34 7.90 14 22 H 0.17 2.10 8.06 -52.49 -0.42 1.68 14 23 H 0.17 1.80 8.06 -52.49 -0.42 1.38 14 LS Contribution 232.81 15.07 3.51 3.51 Total: -1.00 -28.87 232.81 -8.29 -37.16 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -1.57 Total: 2.39 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: -3.80 Total: 4.50 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: 0.10 Total: -60.87 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -28.87 -8.29 -37.16 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307074462.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.434 kcal (2) G-P(sol) polarization free energy of solvation -28.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds