Wall clock time and date at job start Sun Mar 29 2020 21:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.38472 * 120.00160 * 179.97438 * 10 9 7 12 12 N 1.32484 * 119.19663 * 359.73103 * 11 10 9 13 13 C 1.32286 * 120.74775 * 179.75475 * 12 11 10 14 14 C 1.38700 * 119.17974 * 0.51244 * 13 12 11 15 15 Cl 1.73604 * 120.72720 * 179.72609 * 14 13 12 16 16 C 1.38693 * 118.53948 * 359.74490 * 14 13 12 17 17 N 1.32289 * 119.17978 * 359.97438 * 16 14 13 18 18 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 20 20 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 21 21 H 0.97000 * 120.00420 * 0.02562 * 10 9 7 22 22 H 1.07993 * 120.40870 * 180.25343 * 13 12 11 23 23 H 1.07996 * 120.41361 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7413 -4.9182 0.0011 12 7 0.4356 -5.1420 0.0070 13 6 -0.0390 -6.3768 0.0028 14 6 0.8488 -7.4425 0.0029 15 17 0.2700 -9.0792 0.0047 16 6 2.2090 -7.1717 0.0020 17 7 2.6161 -5.9130 0.0006 18 1 -0.4850 0.8401 0.0004 19 1 0.6239 -2.5567 0.8903 20 1 0.6246 -2.5571 -0.8897 21 1 3.1566 -3.4355 0.0009 22 1 -1.1045 -6.5530 0.0036 23 1 2.9270 -7.9784 0.0025 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307074462.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:43 Heat of formation + Delta-G solvation = 23.473510 kcal Electronic energy + Delta-G solvation = -11322.432198 eV Core-core repulsion = 9002.921130 eV Total energy + Delta-G solvation = -2319.511068 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.036 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.91377 -37.74513 -36.93163 -34.76984 -34.67363 -31.63596 -28.81079 -25.92342 -24.88728 -23.48290 -19.74075 -18.58336 -18.13196 -17.18070 -16.69113 -16.39879 -15.60607 -15.11813 -14.53789 -14.47115 -14.09282 -13.17706 -12.87728 -12.75082 -12.38361 -12.26299 -12.11885 -11.99469 -11.46112 -11.15530 -10.61147 -10.09298 -8.88745 -8.30660 -6.46020 0.03542 0.15076 1.11346 1.43187 1.43457 1.56979 2.08342 2.40690 2.79863 3.04798 3.22440 3.58789 3.75005 4.03577 4.68394 4.94844 5.21027 5.28031 5.49998 5.79593 5.81833 6.10193 6.61569 6.70293 7.22457 7.38543 8.81135 Molecular weight = 213.04amu Principal moments of inertia in cm(-1) A = 0.098042 B = 0.005730 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 285.523834 B = 4885.596478 C = 5155.974808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.011 3.989 3 Si 0.981 3.019 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.563 4.563 8 H 0.075 0.925 9 C 0.287 3.713 10 N -0.677 5.677 11 C 0.548 3.452 12 N -0.588 5.588 13 C 0.204 3.796 14 C -0.219 4.219 15 Cl -0.036 7.036 16 C 0.209 3.791 17 N -0.579 5.579 18 H 0.270 0.730 19 H -0.002 1.002 20 H -0.002 1.002 21 H 0.413 0.587 22 H 0.195 0.805 23 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.307 -14.319 0.000 14.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.189 4.189 3 Si 0.805 3.195 4 H -0.183 1.183 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.601 4.601 8 H 0.093 0.907 9 C 0.165 3.835 10 N -0.309 5.309 11 C 0.191 3.809 12 N -0.312 5.312 13 C 0.035 3.965 14 C -0.255 4.255 15 Cl -0.008 7.008 16 C 0.040 3.960 17 N -0.303 5.303 18 H 0.079 0.921 19 H 0.016 0.984 20 H 0.016 0.984 21 H 0.250 0.750 22 H 0.212 0.788 23 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 2.321 -13.134 0.004 13.337 hybrid contribution -0.016 -0.011 -0.003 0.019 sum 2.305 -13.145 0.001 13.345 Atomic orbital electron populations 1.70107 1.07907 1.28539 1.49674 1.25928 0.95804 1.03427 0.93776 0.85161 0.78883 0.77622 0.77862 1.18323 1.20228 1.20217 1.21626 0.94158 0.90960 1.53330 0.90677 1.18583 0.87729 0.82294 0.94928 1.44871 1.10587 1.00718 1.74711 1.19801 0.85526 0.87529 0.88002 1.68206 1.14724 1.24897 1.23359 1.23417 1.01807 0.84782 0.86488 1.22251 0.96224 0.88632 1.18436 1.98342 1.88610 1.16405 1.97448 1.23473 0.93395 0.92911 0.86191 1.68127 1.38129 1.00034 1.24004 0.92117 0.98363 0.98386 0.74953 0.78848 0.77554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.31 13.29 21.45 0.28 -54.02 14 2 C 0.01 0.60 5.46 84.66 0.46 1.06 14 3 Si 0.98 42.38 29.54 68.60 2.03 44.40 14 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 14 5 H -0.28 -11.67 7.11 99.48 0.71 -10.97 14 6 H -0.28 -11.67 7.11 99.48 0.71 -10.96 14 7 C -0.56 -30.82 9.28 25.60 0.24 -30.59 14 8 H 0.08 3.86 7.60 -2.91 -0.02 3.84 14 9 C 0.29 15.42 5.40 85.63 0.46 15.89 14 10 N -0.68 -30.47 5.70 -354.75 -2.02 -32.49 14 11 C 0.55 22.57 8.43 261.47 2.20 24.77 14 12 N -0.59 -23.76 9.59 -197.88 -1.90 -25.66 14 13 C 0.20 6.16 11.12 84.74 0.94 7.10 14 14 C -0.22 -5.61 6.36 22.49 0.14 -5.46 14 15 Cl -0.04 -0.71 29.02 -2.72 -0.08 -0.79 14 16 C 0.21 5.52 11.12 84.73 0.94 6.46 14 17 N -0.58 -20.10 10.46 -197.88 -2.07 -22.17 14 18 H 0.27 14.75 8.31 -92.71 -0.77 13.98 14 19 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 14 20 H 0.00 -0.11 8.14 -2.39 -0.02 -0.12 14 21 H 0.41 17.10 8.44 -92.71 -0.78 16.32 14 22 H 0.19 4.56 8.06 -2.91 -0.02 4.53 14 23 H 0.21 3.64 8.06 -2.91 -0.02 3.61 14 Total: -1.00 -63.38 232.81 2.10 -61.29 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 0.46 Total: 10.22 kcal Atomic # 6 Polarization: 13.84 SS G_CDS: 5.39 Total: 19.23 kcal Atomic # 7 Polarization: -128.64 SS G_CDS: -5.70 Total: -134.34 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.08 Total: -0.79 kcal Total: -63.38 2.10 -61.29 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307074462.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.761 kcal (2) G-P(sol) polarization free energy of solvation -63.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds