Wall clock time and date at job start Sun Mar 29 2020 21:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38593 * 120.81119 * 2 1 4 4 C 1.38203 * 119.26456 * 180.27802 * 3 2 1 5 5 N 1.31935 * 120.93395 * 359.72637 * 4 3 2 6 6 C 1.31862 * 121.77302 * 0.02562 * 5 4 3 7 7 Cl 1.73598 * 119.68355 * 179.97438 * 6 5 4 8 8 C 1.39061 * 120.63429 * 0.02562 * 6 5 4 9 9 O 1.35777 * 120.48844 * 179.97438 * 8 6 5 10 10 C 1.34821 * 117.00019 * 90.00372 * 9 8 6 11 11 H 1.07999 * 120.00181 * 359.97438 * 10 9 8 12 12 C 1.38655 * 119.99874 * 179.97438 * 10 9 8 13 13 N 1.31567 * 120.00064 * 359.72680 * 12 10 9 14 14 Si 1.86795 * 120.00032 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47314 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46947 * 120.00355 * 14 12 10 17 17 H 1.48499 * 109.47726 * 239.99918 * 14 12 10 18 18 H 1.09002 * 109.46857 * 270.24160 * 1 2 3 19 19 H 1.09004 * 109.47218 * 30.23429 * 1 2 3 20 20 H 1.08998 * 109.47535 * 150.24127 * 1 2 3 21 21 H 1.07997 * 120.37043 * 0.02562 * 3 2 1 22 22 H 1.07998 * 119.53043 * 179.70537 * 4 3 2 23 23 H 0.97000 * 119.99756 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1903 0.0000 4 6 3.5984 1.1530 -0.0059 5 7 4.2458 0.0035 -0.0060 6 6 3.6098 -1.1516 -0.0011 7 17 4.5162 -2.6322 -0.0023 8 6 2.2198 -1.1952 0.0039 9 8 1.5680 -2.3862 0.0083 10 6 1.2783 -2.9209 1.2116 11 1 1.5642 -2.4035 2.1155 12 6 0.6133 -4.1351 1.2887 13 7 0.2602 -4.7629 0.1877 14 14 0.2125 -4.8763 2.9559 15 1 0.7077 -3.9774 4.0292 16 1 -1.2581 -5.0377 3.0852 17 1 0.8686 -6.2028 3.0786 18 1 -0.3633 0.0043 1.0277 19 1 -0.3634 0.8879 -0.5175 20 1 -0.3634 -0.8921 -0.5101 21 1 1.6963 2.1365 0.0004 22 1 4.1558 2.0780 -0.0107 23 1 -0.2054 -5.6121 0.2417 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307210006.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:27 Heat of formation + Delta-G solvation = -24.148969 kcal Electronic energy + Delta-G solvation = -11932.886863 eV Core-core repulsion = 9579.017978 eV Total energy + Delta-G solvation = -2353.868884 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.37869 -38.64273 -37.45478 -34.64547 -33.92330 -31.05037 -28.73667 -26.94886 -24.07337 -23.05647 -20.03802 -18.39832 -18.04326 -17.51361 -16.15721 -15.92324 -15.33545 -14.74921 -14.27702 -13.97267 -13.65504 -13.49376 -13.30338 -12.74864 -12.53667 -12.42751 -12.14060 -12.09197 -11.83571 -10.73890 -10.28697 -10.20459 -9.57946 -8.23226 -5.97590 -0.01249 0.19183 1.00377 1.39020 1.43018 1.53727 2.26489 2.67700 3.10804 3.49864 3.65730 3.86954 4.12060 4.31157 4.62127 4.75241 4.80079 4.93264 5.16182 5.19971 5.39527 5.68463 6.13635 6.76584 7.18814 7.95728 8.99239 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.032434 B = 0.012390 C = 0.010060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.097630 B = 2259.345170 C = 2782.549163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.076 4.076 3 C -0.143 4.143 4 C 0.092 3.908 5 N -0.495 5.495 6 C 0.121 3.879 7 Cl -0.044 7.044 8 C 0.061 3.939 9 O -0.252 6.252 10 C -0.364 4.364 11 H 0.065 0.935 12 C -0.022 4.022 13 N -0.927 5.927 14 Si 0.998 3.002 15 H -0.260 1.260 16 H -0.270 1.270 17 H -0.277 1.277 18 H 0.077 0.923 19 H 0.105 0.895 20 H 0.046 0.954 21 H 0.188 0.812 22 H 0.208 0.792 23 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.901 11.764 1.805 12.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.084 4.084 3 C -0.162 4.162 4 C -0.065 4.065 5 N -0.209 5.209 6 C -0.042 4.042 7 Cl -0.016 7.016 8 C 0.013 3.987 9 O -0.164 6.164 10 C -0.440 4.440 11 H 0.083 0.917 12 C -0.217 4.217 13 N -0.569 5.569 14 Si 0.820 3.180 15 H -0.184 1.184 16 H -0.195 1.195 17 H -0.203 1.203 18 H 0.096 0.904 19 H 0.124 0.876 20 H 0.066 0.934 21 H 0.206 0.794 22 H 0.225 0.775 23 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.727 11.343 1.586 11.774 hybrid contribution -0.710 -0.987 0.554 1.336 sum 2.016 10.356 2.140 10.765 Atomic orbital electron populations 1.20610 0.88411 1.03291 1.03144 1.21204 0.98895 0.91836 0.96505 1.22488 0.95093 0.98784 0.99848 1.23337 0.92519 0.95014 0.95598 1.66958 1.41949 0.97720 1.14227 1.22575 0.88803 0.88931 1.03895 1.98350 1.75365 1.31334 1.96556 1.20050 0.89786 0.89610 0.99273 1.83883 1.73079 1.29903 1.29532 1.21073 1.37113 1.04253 0.81577 0.91690 1.26041 0.97370 0.96014 1.02253 1.70176 1.41258 1.16648 1.28860 0.84806 0.78347 0.78242 0.76590 1.18430 1.19475 1.20261 0.90438 0.87635 0.93439 0.79438 0.77505 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.22 9.86 71.23 0.70 -2.52 14 2 C -0.08 -2.78 5.93 -19.56 -0.12 -2.90 14 3 C -0.14 -3.77 9.81 22.35 0.22 -3.55 14 4 C 0.09 2.54 11.17 84.67 0.95 3.49 14 5 N -0.49 -18.62 10.33 -186.18 -1.92 -20.55 14 6 C 0.12 5.39 7.29 84.89 0.62 6.01 14 7 Cl -0.04 -2.02 28.67 -2.72 -0.08 -2.10 14 8 C 0.06 2.87 5.59 22.69 0.13 3.00 14 9 O -0.25 -14.32 8.34 -22.95 -0.19 -14.51 14 10 C -0.36 -20.70 9.82 67.92 0.67 -20.03 14 11 H 0.07 3.60 7.76 -2.91 -0.02 3.58 14 12 C -0.02 -1.23 5.49 84.83 0.47 -0.76 14 13 N -0.93 -56.80 13.67 21.61 0.30 -56.51 14 14 Si 1.00 44.09 29.55 68.60 2.03 46.12 14 15 H -0.26 -10.85 7.11 99.48 0.71 -10.15 14 16 H -0.27 -11.34 7.11 99.48 0.71 -10.64 14 17 H -0.28 -12.02 7.11 99.48 0.71 -11.32 14 18 H 0.08 2.46 8.14 -2.39 -0.02 2.44 14 19 H 0.11 2.44 8.10 -2.39 -0.02 2.43 14 20 H 0.05 1.93 7.62 -2.39 -0.02 1.91 14 21 H 0.19 2.94 8.06 -2.91 -0.02 2.92 14 22 H 0.21 3.48 8.06 -2.91 -0.02 3.46 14 23 H 0.26 15.05 8.31 -92.71 -0.77 14.28 14 Total: -1.00 -70.88 232.91 4.98 -65.90 By element: Atomic # 1 Polarization: -2.31 SS G_CDS: 1.22 Total: -1.08 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: 3.63 Total: -17.27 kcal Atomic # 7 Polarization: -75.42 SS G_CDS: -1.63 Total: -77.05 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.19 Total: -14.51 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -0.08 Total: -2.10 kcal Total: -70.88 4.98 -65.90 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307210006.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.750 kcal (2) G-P(sol) polarization free energy of solvation -70.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds