Wall clock time and date at job start Sun Mar 29 2020 21:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31354 * 1 3 3 Si 1.86802 * 119.99783 * 2 1 4 4 H 1.48497 * 109.47231 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47156 * 300.00139 * 3 2 1 6 6 H 1.48505 * 109.47144 * 59.99375 * 3 2 1 7 7 C 1.39074 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99625 * 180.02562 * 7 2 1 9 9 N 1.36811 * 119.99882 * 359.97438 * 7 2 1 10 10 C 1.34770 * 119.99722 * 179.97438 * 9 7 2 11 11 O 1.21655 * 120.00603 * 0.02562 * 10 9 7 12 12 C 1.47147 * 119.99837 * 179.97438 * 10 9 7 13 13 F 1.35097 * 119.99931 * 0.02562 * 12 10 9 14 14 C 1.33259 * 119.99841 * 180.02562 * 12 10 9 15 15 C 1.51450 * 126.33925 * 180.02562 * 14 12 10 16 16 C 1.54274 * 106.88313 * 179.63662 * 15 14 12 17 17 C 1.54980 * 103.75355 * 336.85553 * 16 15 14 18 18 C 1.51925 * 126.38868 * 359.95873 * 14 12 10 19 19 H 0.96994 * 120.00060 * 0.02562 * 1 2 3 20 20 H 0.96996 * 120.00055 * 0.02562 * 9 7 2 21 21 H 1.09002 * 109.98686 * 60.26751 * 15 14 12 22 22 H 1.09004 * 109.98055 * 299.00697 * 15 14 12 23 23 H 1.09007 * 110.57280 * 95.41917 * 16 15 14 24 24 H 1.09000 * 110.57067 * 218.29086 * 16 15 14 25 25 H 1.09006 * 110.83789 * 155.29485 * 17 16 15 26 26 H 1.08998 * 110.83492 * 278.87652 * 17 16 15 27 27 H 1.08997 * 110.42419 * 85.05375 * 18 14 12 28 28 H 1.09005 * 110.55257 * 322.60004 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 3.7075 1.3465 0.0006 5 1 1.8887 2.3965 -1.2125 6 1 1.8886 2.3966 1.2125 7 6 2.0090 -1.2044 0.0005 8 1 3.0889 -1.2042 0.0010 9 7 1.3250 -2.3892 0.0016 10 6 1.9989 -3.5563 0.0016 11 8 3.2155 -3.5563 0.0011 12 6 1.2633 -4.8307 0.0033 13 9 -0.0877 -4.8307 0.0044 14 6 1.9296 -5.9847 0.0038 15 6 1.3220 -7.3719 0.0050 16 6 2.4944 -8.3746 -0.0042 17 6 3.6704 -7.5611 -0.6016 18 6 3.4395 -6.1536 0.0019 19 1 -0.4850 0.8400 -0.0004 20 1 0.3550 -2.3893 0.0016 21 1 0.7068 -7.5099 -0.8842 22 1 0.7178 -7.5132 0.9012 23 1 2.7291 -8.6988 1.0098 24 1 2.2609 -9.2311 -0.6367 25 1 4.6280 -7.9693 -0.2783 26 1 3.6079 -7.5311 -1.6894 27 1 3.8287 -6.1071 1.0190 28 1 3.9091 -5.3911 -0.6196 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307213665.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:34 Heat of formation + Delta-G solvation = -105.776753 kcal Electronic energy + Delta-G solvation = -13956.956888 eV Core-core repulsion = 11307.045077 eV Total energy + Delta-G solvation = -2649.911811 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.79718 -40.33089 -38.67600 -36.14145 -33.41625 -32.08451 -29.69780 -27.83350 -25.68810 -22.37044 -21.46753 -20.43982 -19.38058 -18.50494 -17.17944 -17.02697 -16.79057 -16.08780 -15.77531 -15.29056 -15.07173 -14.30121 -14.15412 -13.63880 -13.36637 -13.16427 -12.97063 -12.50728 -12.35135 -12.14037 -12.02351 -11.87397 -11.63969 -11.43391 -10.40637 -10.20797 -9.76550 -8.59248 -6.06278 0.27543 1.39542 1.39911 1.55920 2.21909 2.22362 2.80895 3.16113 3.32151 3.76595 3.84914 4.18196 4.21911 4.40138 4.50509 4.70772 4.91585 4.99562 5.11241 5.13622 5.19629 5.28242 5.29680 5.45979 5.56963 5.92400 6.42243 6.94730 7.33522 7.85217 8.58207 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.061002 B = 0.007338 C = 0.006618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.890628 B = 3815.031066 C = 4229.916748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.012 4.012 3 Si 1.006 2.994 4 H -0.267 1.267 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.338 4.338 8 H 0.092 0.908 9 N -0.553 5.553 10 C 0.453 3.547 11 O -0.605 6.605 12 C -0.017 4.017 13 F -0.147 7.147 14 C -0.093 4.093 15 C -0.092 4.092 16 C -0.112 4.112 17 C -0.119 4.119 18 C -0.086 4.086 19 H 0.283 0.717 20 H 0.396 0.604 21 H 0.087 0.913 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.054 -12.574 -0.246 12.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.213 4.213 3 Si 0.827 3.173 4 H -0.191 1.191 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.467 4.467 8 H 0.110 0.890 9 N -0.186 5.186 10 C 0.242 3.758 11 O -0.495 6.495 12 C -0.039 4.039 13 F -0.126 7.126 14 C -0.097 4.097 15 C -0.129 4.129 16 C -0.149 4.149 17 C -0.156 4.156 18 C -0.123 4.123 19 H 0.093 0.907 20 H 0.230 0.770 21 H 0.106 0.894 22 H 0.106 0.894 23 H 0.100 0.900 24 H 0.113 0.887 25 H 0.109 0.891 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.628 -12.378 -0.245 12.656 hybrid contribution -0.750 1.188 0.039 1.405 sum 1.878 -11.190 -0.206 11.348 Atomic orbital electron populations 1.69686 1.07394 1.30020 1.48106 1.26342 0.96591 1.03134 0.95271 0.84698 0.78124 0.75866 0.78566 1.19111 1.19252 1.19267 1.19894 0.93257 0.83379 1.50215 0.89041 1.41923 1.09629 1.05085 1.61942 1.18257 0.87733 0.83935 0.85867 1.90567 1.13338 1.86782 1.58770 1.19056 0.76446 0.94298 1.14114 1.91395 1.29160 1.97256 1.94778 1.23272 0.98902 0.93700 0.93847 1.21313 0.99309 0.88840 1.03426 1.22377 0.92915 0.97112 1.02509 1.22590 0.99862 0.92758 1.00386 1.21503 0.89753 0.98941 1.02091 0.90700 0.77045 0.89428 0.89430 0.89997 0.88700 0.89080 0.91098 0.90274 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.52 13.05 21.69 0.28 -50.24 15 2 C -0.01 -0.66 5.50 84.96 0.47 -0.19 15 3 Si 1.01 42.62 29.55 68.60 2.03 44.65 15 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 15 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 15 6 H -0.27 -10.80 7.11 99.48 0.71 -10.09 15 7 C -0.34 -19.69 9.68 84.12 0.81 -18.88 15 8 H 0.09 5.52 7.15 -2.91 -0.02 5.50 15 9 N -0.55 -30.87 5.27 -310.26 -1.64 -32.50 15 10 C 0.45 23.80 7.72 86.58 0.67 24.47 15 11 O -0.61 -33.91 13.35 -4.20 -0.06 -33.97 15 12 C -0.02 -0.73 7.42 23.49 0.17 -0.56 15 13 F -0.15 -6.12 16.52 44.97 0.74 -5.38 15 14 C -0.09 -3.27 6.17 -16.94 -0.10 -3.38 15 15 C -0.09 -2.27 6.41 30.52 0.20 -2.08 15 16 C -0.11 -2.06 6.87 31.70 0.22 -1.84 15 17 C -0.12 -2.63 6.95 31.91 0.22 -2.41 15 18 C -0.09 -2.81 5.42 30.88 0.17 -2.65 15 19 H 0.28 14.42 8.31 -92.71 -0.77 13.65 15 20 H 0.40 21.81 7.44 -92.71 -0.69 21.12 15 21 H 0.09 2.02 8.14 -2.39 -0.02 2.00 15 22 H 0.09 2.01 8.14 -2.39 -0.02 1.99 15 23 H 0.08 1.32 8.14 -2.38 -0.02 1.30 15 24 H 0.09 1.30 8.14 -2.39 -0.02 1.28 15 25 H 0.09 1.64 8.14 -2.38 -0.02 1.62 15 26 H 0.07 1.54 8.14 -2.39 -0.02 1.52 15 27 H 0.08 2.59 8.14 -2.39 -0.02 2.57 15 28 H 0.07 2.74 6.28 -2.38 -0.01 2.73 15 Total: -1.00 -65.08 247.36 4.67 -60.41 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 0.49 Total: 24.55 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 2.82 Total: -7.51 kcal Atomic # 7 Polarization: -81.39 SS G_CDS: -1.35 Total: -82.75 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -0.06 Total: -33.97 kcal Atomic # 9 Polarization: -6.12 SS G_CDS: 0.74 Total: -5.38 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -65.08 4.67 -60.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307213665.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.370 kcal (2) G-P(sol) polarization free energy of solvation -65.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds