Wall clock time and date at job start Sun Mar 29 2020 22:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47152 * 2 1 4 4 H 1.09004 * 110.32912 * 52.74958 * 3 2 1 5 5 C 1.54472 * 110.37541 * 175.00108 * 3 2 1 6 6 C 1.54505 * 104.06681 * 142.92132 * 5 3 2 7 7 C 1.54487 * 104.06179 * 0.02562 * 6 5 3 8 8 H 1.08997 * 110.37332 * 94.85398 * 7 6 5 9 9 C 1.50697 * 110.37217 * 217.19305 * 7 6 5 10 10 O 1.21286 * 120.00092 * 114.99837 * 9 7 6 11 11 N 1.34781 * 119.99810 * 294.99339 * 9 7 6 12 12 C 1.37093 * 120.00056 * 180.02562 * 11 9 7 13 13 H 1.08001 * 119.99882 * 0.02562 * 12 11 9 14 14 C 1.38953 * 120.00135 * 180.02562 * 12 11 9 15 15 N 1.31413 * 119.99994 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99985 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47248 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.46930 * 120.00046 * 16 14 12 19 19 H 1.48502 * 109.47173 * 239.99722 * 16 14 12 20 20 O 1.44421 * 104.79872 * 336.02098 * 7 6 5 21 21 H 1.08995 * 109.47537 * 60.00007 * 1 2 3 22 22 H 1.08998 * 109.46713 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46911 * 299.99907 * 1 2 3 24 24 H 1.09000 * 109.46911 * 240.00093 * 2 1 3 25 25 H 1.08999 * 109.47230 * 120.00385 * 2 1 3 26 26 H 1.09003 * 110.51251 * 24.27609 * 5 3 2 27 27 H 1.08997 * 110.51471 * 261.57064 * 5 3 2 28 28 H 1.09003 * 110.51737 * 241.36166 * 6 5 3 29 29 H 1.08999 * 110.63305 * 118.70297 * 6 5 3 30 30 H 0.97001 * 119.99890 * 0.02562 * 11 9 7 31 31 H 0.96997 * 120.00034 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5829 2.0057 0.8136 5 6 3.5793 1.4687 0.1262 6 6 4.0104 2.6438 -0.7796 7 6 2.6804 3.1891 -1.3454 8 1 2.3220 4.0202 -0.7381 9 6 2.8582 3.6229 -2.7776 10 8 2.2690 3.0423 -3.6647 11 7 3.6718 4.6560 -3.0728 12 6 3.8332 5.0510 -4.3756 13 1 3.3080 4.5345 -5.1654 14 6 4.6724 6.1158 -4.6800 15 7 5.3111 6.7446 -3.7189 16 14 4.8918 6.6544 -6.4551 17 1 4.0688 5.7909 -7.3397 18 1 4.4595 8.0676 -6.6006 19 1 6.3218 6.5325 -6.8364 20 8 1.7626 2.0767 -1.2672 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 4.0080 0.5329 -0.2325 27 1 3.8749 1.6541 1.1588 28 1 4.6520 2.2890 -1.5862 29 1 4.5202 3.4110 -0.1968 30 1 4.1432 5.1201 -2.3633 31 1 5.8972 7.4876 -3.9313 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307259124.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:11 Heat of formation + Delta-G solvation = -99.347612 kcal Electronic energy + Delta-G solvation = -14352.670134 eV Core-core repulsion = 11826.497416 eV Total energy + Delta-G solvation = -2526.172718 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.55514 -37.48882 -33.96543 -33.35765 -31.90704 -31.04702 -28.36214 -25.16625 -23.50801 -21.54796 -20.75686 -19.26296 -17.94088 -16.31737 -16.07844 -15.46037 -14.76256 -14.02820 -13.83743 -13.49559 -13.36388 -13.14358 -12.96404 -12.44150 -11.57755 -11.45792 -11.42572 -11.26214 -11.05844 -10.79480 -10.53224 -10.43012 -10.33514 -10.22945 -9.55231 -9.44220 -8.27180 -7.97830 -6.42461 -3.83345 3.16548 3.27295 3.34873 3.82204 3.96640 4.27210 4.75536 4.78823 5.05960 5.16829 5.22093 5.30573 5.40231 5.47014 5.51674 5.76941 5.85814 5.94643 5.97784 5.99261 6.17880 6.24101 6.32148 6.39523 6.41391 7.21271 7.55214 8.05039 8.60721 9.17194 9.52085 10.04056 10.75350 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.064976 B = 0.006708 C = 0.006287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.825812 B = 4173.041981 C = 4452.869443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C 0.067 3.933 4 H 0.065 0.935 5 C -0.148 4.148 6 C -0.144 4.144 7 C 0.067 3.933 8 H 0.078 0.922 9 C 0.448 3.552 10 O -0.576 6.576 11 N -0.559 5.559 12 C -0.299 4.299 13 H 0.104 0.896 14 C 0.023 3.977 15 N -0.901 5.901 16 Si 0.930 3.070 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.281 1.281 20 O -0.338 6.338 21 H 0.064 0.936 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.393 0.607 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.186 -7.459 9.991 12.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C 0.009 3.991 4 H 0.083 0.917 5 C -0.186 4.186 6 C -0.182 4.182 7 C 0.006 3.994 8 H 0.096 0.904 9 C 0.232 3.768 10 O -0.459 6.459 11 N -0.196 5.196 12 C -0.428 4.428 13 H 0.122 0.878 14 C -0.179 4.179 15 N -0.543 5.543 16 Si 0.757 3.243 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.207 1.207 20 O -0.256 6.256 21 H 0.083 0.917 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.226 0.774 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.626 -7.761 9.205 12.324 hybrid contribution 0.673 0.774 -0.183 1.042 sum -1.953 -6.987 9.023 11.578 Atomic orbital electron populations 1.21733 0.95437 1.01249 1.02390 1.21554 0.96653 0.94663 1.02420 1.23056 0.94076 0.94318 0.87629 0.91737 1.22981 0.96068 0.99494 1.00088 1.22910 0.97664 0.97961 0.99688 1.22755 0.89395 0.90547 0.96752 0.90414 1.19502 0.84526 0.83905 0.88823 1.90539 1.50379 1.56847 1.48184 1.41770 1.40208 1.28308 1.09356 1.19772 1.25223 1.13557 0.84289 0.87802 1.25264 0.96337 0.96397 0.99866 1.69620 1.29612 1.22679 1.32353 0.85783 0.78079 0.78445 0.81947 1.19173 1.20704 1.20722 1.89266 1.57166 1.43043 1.36145 0.91684 0.93014 0.93082 0.90973 0.91086 0.90678 0.90770 0.90129 0.90103 0.77377 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.85 37.16 0.37 -1.42 16 2 C -0.12 -1.42 5.56 -26.73 -0.15 -1.57 16 3 C 0.07 0.97 3.24 -25.96 -0.08 0.88 16 4 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 5 C -0.15 -1.94 6.63 -25.17 -0.17 -2.11 16 6 C -0.14 -2.31 6.61 -25.16 -0.17 -2.48 16 7 C 0.07 1.31 3.71 -27.10 -0.10 1.21 16 8 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 9 C 0.45 11.31 7.03 -10.99 -0.08 11.23 16 10 O -0.58 -17.03 16.13 -13.67 -0.22 -17.25 16 11 N -0.56 -14.53 5.27 -10.96 -0.06 -14.59 16 12 C -0.30 -8.49 9.68 -14.93 -0.14 -8.63 16 13 H 0.10 3.11 7.16 -52.49 -0.38 2.73 16 14 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 15 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 16 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 O -0.34 -6.70 10.40 -54.45 -0.57 -7.27 16 21 H 0.06 0.91 8.01 -51.93 -0.42 0.50 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.94 7.87 -51.93 -0.41 0.53 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.08 1.43 7.87 -51.93 -0.41 1.02 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 31 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 265.78 15.07 4.01 4.01 Total: -1.00 -32.25 265.78 -6.20 -38.45 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -4.45 Total: 6.68 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -0.62 Total: -2.36 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.67 Total: -38.41 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.79 Total: -24.52 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.25 -6.20 -38.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307259124.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.897 kcal (2) G-P(sol) polarization free energy of solvation -32.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds