Wall clock time and date at job start Sun Mar 29 2020 22:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47152 * 2 1 4 4 H 1.09004 * 110.32912 * 52.74958 * 3 2 1 5 5 C 1.54472 * 110.37541 * 175.00108 * 3 2 1 6 6 C 1.54505 * 104.06681 * 142.92132 * 5 3 2 7 7 C 1.54487 * 104.06179 * 0.02562 * 6 5 3 8 8 H 1.08997 * 110.37332 * 94.85398 * 7 6 5 9 9 C 1.50697 * 110.37217 * 217.19305 * 7 6 5 10 10 O 1.21286 * 120.00092 * 114.99837 * 9 7 6 11 11 N 1.34781 * 119.99810 * 294.99339 * 9 7 6 12 12 C 1.37093 * 120.00056 * 180.02562 * 11 9 7 13 13 H 1.08001 * 119.99882 * 0.02562 * 12 11 9 14 14 C 1.38953 * 120.00135 * 180.02562 * 12 11 9 15 15 N 1.31413 * 119.99994 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99985 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47248 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.46930 * 120.00046 * 16 14 12 19 19 H 1.48502 * 109.47173 * 239.99722 * 16 14 12 20 20 O 1.44421 * 104.79872 * 336.02098 * 7 6 5 21 21 H 1.08995 * 109.47537 * 60.00007 * 1 2 3 22 22 H 1.08998 * 109.46713 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46911 * 299.99907 * 1 2 3 24 24 H 1.09000 * 109.46911 * 240.00093 * 2 1 3 25 25 H 1.08999 * 109.47230 * 120.00385 * 2 1 3 26 26 H 1.09003 * 110.51251 * 24.27609 * 5 3 2 27 27 H 1.08997 * 110.51471 * 261.57064 * 5 3 2 28 28 H 1.09003 * 110.51737 * 241.36166 * 6 5 3 29 29 H 1.08999 * 110.63305 * 118.70297 * 6 5 3 30 30 H 0.97001 * 119.99890 * 0.02562 * 11 9 7 31 31 H 0.96997 * 120.00034 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5829 2.0057 0.8136 5 6 3.5793 1.4687 0.1262 6 6 4.0104 2.6438 -0.7796 7 6 2.6804 3.1891 -1.3454 8 1 2.3220 4.0202 -0.7381 9 6 2.8582 3.6229 -2.7776 10 8 2.2690 3.0423 -3.6647 11 7 3.6718 4.6560 -3.0728 12 6 3.8332 5.0510 -4.3756 13 1 3.3080 4.5345 -5.1654 14 6 4.6724 6.1158 -4.6800 15 7 5.3111 6.7446 -3.7189 16 14 4.8918 6.6544 -6.4551 17 1 4.0688 5.7909 -7.3397 18 1 4.4595 8.0676 -6.6006 19 1 6.3218 6.5325 -6.8364 20 8 1.7626 2.0767 -1.2672 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 4.0080 0.5329 -0.2325 27 1 3.8749 1.6541 1.1588 28 1 4.6520 2.2890 -1.5862 29 1 4.5202 3.4110 -0.1968 30 1 4.1432 5.1201 -2.3633 31 1 5.8972 7.4876 -3.9313 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307259124.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:11 Heat of formation + Delta-G solvation = -121.533371 kcal Electronic energy + Delta-G solvation = -14353.632180 eV Core-core repulsion = 11826.497416 eV Total energy + Delta-G solvation = -2527.134765 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.06212 -39.31259 -36.05170 -34.50303 -33.56406 -32.77087 -29.74182 -27.00096 -24.96507 -22.75697 -21.87740 -21.12910 -20.02830 -17.95684 -17.43081 -16.98142 -16.63721 -15.84599 -15.38599 -15.10222 -14.61626 -14.49899 -14.17986 -13.92241 -13.55857 -12.99711 -12.74246 -12.63027 -12.46429 -12.33587 -12.12831 -11.84356 -11.69983 -11.56133 -11.47308 -10.81598 -10.26939 -10.08383 -8.51609 -6.01501 1.34417 1.40886 1.55371 1.92924 2.23297 2.63011 3.13179 3.35895 3.61203 3.86649 3.95675 4.12997 4.21414 4.31145 4.39922 4.49196 4.64502 4.77424 4.90976 4.97297 5.07227 5.08745 5.17257 5.26065 5.36779 5.44829 5.84695 6.02804 6.53681 7.06032 7.45868 8.01972 8.65850 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.064976 B = 0.006708 C = 0.006287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.825812 B = 4173.041981 C = 4452.869443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C 0.057 3.943 4 H 0.086 0.914 5 C -0.138 4.138 6 C -0.141 4.141 7 C 0.072 3.928 8 H 0.102 0.898 9 C 0.437 3.563 10 O -0.630 6.630 11 N -0.559 5.559 12 C -0.340 4.340 13 H 0.076 0.924 14 C -0.007 4.007 15 N -0.915 5.915 16 Si 0.996 3.004 17 H -0.276 1.276 18 H -0.268 1.268 19 H -0.267 1.267 20 O -0.377 6.377 21 H 0.031 0.969 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.053 0.947 25 H 0.107 0.893 26 H 0.078 0.922 27 H 0.113 0.887 28 H 0.054 0.946 29 H 0.106 0.894 30 H 0.399 0.601 31 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.404 -7.372 11.724 13.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C 0.000 4.000 4 H 0.104 0.896 5 C -0.175 4.175 6 C -0.179 4.179 7 C 0.011 3.989 8 H 0.119 0.881 9 C 0.225 3.775 10 O -0.517 6.517 11 N -0.197 5.197 12 C -0.469 4.469 13 H 0.094 0.906 14 C -0.208 4.208 15 N -0.555 5.555 16 Si 0.819 3.181 17 H -0.200 1.200 18 H -0.193 1.193 19 H -0.192 1.192 20 O -0.296 6.296 21 H 0.050 0.950 22 H 0.087 0.913 23 H 0.085 0.915 24 H 0.072 0.928 25 H 0.125 0.875 26 H 0.097 0.903 27 H 0.131 0.869 28 H 0.073 0.927 29 H 0.125 0.875 30 H 0.234 0.766 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.822 -7.661 10.983 13.514 hybrid contribution 0.415 0.740 -0.691 1.094 sum -1.407 -6.921 10.292 12.483 Atomic orbital electron populations 1.21727 0.95360 1.02132 1.01510 1.21621 0.96774 0.93558 1.03225 1.23458 0.95361 0.95286 0.85915 0.89600 1.22997 0.94846 0.98211 1.01479 1.22917 0.95392 0.99880 0.99706 1.22690 0.91813 0.91749 0.92677 0.88087 1.20598 0.83000 0.82781 0.91150 1.90489 1.52232 1.58362 1.50657 1.41779 1.40420 1.28615 1.08851 1.19711 1.27095 1.15172 0.84964 0.90584 1.26059 0.95108 0.95508 1.04088 1.69664 1.29202 1.22639 1.34020 0.84842 0.78423 0.78193 0.76673 1.20043 1.19251 1.19208 1.89246 1.57591 1.43396 1.39358 0.94953 0.91319 0.91509 0.92842 0.87467 0.90280 0.86886 0.92679 0.87513 0.76622 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.85 71.98 0.71 -2.62 16 2 C -0.11 -2.57 5.56 30.59 0.17 -2.40 16 3 C 0.06 1.50 3.24 31.09 0.10 1.60 16 4 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 5 C -0.14 -3.17 6.63 31.61 0.21 -2.96 16 6 C -0.14 -4.31 6.61 31.61 0.21 -4.10 16 7 C 0.07 2.80 3.71 30.35 0.11 2.91 16 8 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 9 C 0.44 22.87 7.03 87.66 0.62 23.48 16 10 O -0.63 -39.22 16.13 15.33 0.25 -38.97 16 11 N -0.56 -29.88 5.27 -306.99 -1.62 -31.50 16 12 C -0.34 -19.91 9.68 84.04 0.81 -19.10 16 13 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 14 C -0.01 -0.38 5.50 84.93 0.47 0.08 16 15 N -0.92 -49.14 13.05 21.66 0.28 -48.86 16 16 Si 1.00 43.19 29.55 68.60 2.03 45.22 16 17 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 18 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 19 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 20 O -0.38 -14.96 10.40 -130.60 -1.36 -16.31 16 21 H 0.03 0.91 8.01 -2.39 -0.02 0.89 16 22 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.08 1.77 7.87 -2.39 -0.02 1.75 16 27 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.05 1.95 7.87 -2.39 -0.02 1.93 16 29 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.40 19.81 7.90 -92.71 -0.73 19.08 16 31 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -72.21 265.78 3.38 -68.84 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 0.39 Total: 24.68 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: 3.41 Total: -3.09 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -1.34 Total: -80.36 kcal Atomic # 8 Polarization: -54.18 SS G_CDS: -1.11 Total: -55.29 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -72.21 3.38 -68.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307259124.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.696 kcal (2) G-P(sol) polarization free energy of solvation -72.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds