Wall clock time and date at job start Sun Mar 29 2020 21:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47151 * 2 1 4 4 C 1.50697 * 109.47262 * 119.99951 * 2 1 3 5 5 H 1.08008 * 120.00030 * 119.99527 * 4 2 1 6 6 C 1.37874 * 120.00239 * 300.00213 * 4 2 1 7 7 N 1.31515 * 120.00320 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 119.99840 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.46985 * 90.00319 * 8 6 4 10 10 H 1.48502 * 109.47202 * 210.00442 * 8 6 4 11 11 H 1.48500 * 109.47236 * 330.00632 * 8 6 4 12 12 N 1.46903 * 109.46677 * 239.99753 * 2 1 3 13 13 C 1.46908 * 110.99663 * 155.00709 * 12 2 1 14 14 H 1.09003 * 109.53487 * 33.63204 * 13 12 2 15 15 C 1.53115 * 109.50184 * 153.73659 * 13 12 2 16 16 C 1.53120 * 109.15867 * 177.59758 * 15 13 12 17 17 C 1.53036 * 109.27751 * 302.33751 * 16 15 13 18 18 N 1.46853 * 109.52292 * 59.18190 * 17 16 15 19 19 C 1.46896 * 111.00479 * 174.16031 * 18 17 16 20 20 C 1.46850 * 111.19653 * 298.25856 * 18 17 16 21 21 H 1.08998 * 109.46900 * 185.48873 * 1 2 3 22 22 H 1.09004 * 109.46932 * 305.48410 * 1 2 3 23 23 H 1.09001 * 109.47126 * 65.48531 * 1 2 3 24 24 H 0.96995 * 119.99821 * 179.97438 * 7 6 4 25 25 H 1.00900 * 110.99790 * 31.05799 * 12 2 1 26 26 H 1.09008 * 109.51945 * 297.49251 * 15 13 12 27 27 H 1.08992 * 109.52830 * 57.68825 * 15 13 12 28 28 H 1.09002 * 109.50949 * 62.28045 * 16 15 13 29 29 H 1.09006 * 109.50454 * 182.40312 * 16 15 13 30 30 H 1.08994 * 109.46517 * 179.19417 * 17 16 15 31 31 H 1.08998 * 109.46606 * 299.18014 * 17 16 15 32 32 H 1.08999 * 109.47625 * 184.20875 * 19 18 17 33 33 H 1.09004 * 109.46832 * 304.21555 * 19 18 17 34 34 H 1.09003 * 109.46850 * 64.21056 * 19 18 17 35 35 H 1.08994 * 109.46628 * 301.72253 * 20 18 17 36 36 H 1.09001 * 109.46171 * 181.75619 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8596 3.5565 8 14 0.6259 1.2797 2.6541 9 1 -0.8020 0.8743 2.6994 10 1 0.9773 1.9953 3.9070 11 1 0.8490 2.1772 1.4922 12 7 2.0196 -0.6926 -1.1995 13 6 3.3671 -0.2318 -1.5603 14 1 3.9238 0.0109 -0.6551 15 6 4.0967 -1.3372 -2.3284 16 6 5.4769 -0.8275 -2.7525 17 6 5.3104 0.4344 -3.6022 18 7 4.6077 1.4617 -2.8227 19 6 4.5520 2.7330 -3.5565 20 6 3.2616 1.0129 -2.4445 21 1 -0.3633 -1.0229 0.0983 22 1 -0.3633 0.5966 0.8368 23 1 -0.3633 0.4264 -0.9350 24 1 1.9033 -0.5280 4.4375 25 1 1.3792 -0.5766 -1.9706 26 1 4.2124 -2.2110 -1.6871 27 1 3.5205 -1.6073 -3.2133 28 1 6.0669 -0.5942 -1.8662 29 1 5.9846 -1.5951 -3.3367 30 1 6.2919 0.8080 -3.8938 31 1 4.7319 0.1974 -4.4950 32 1 4.0932 3.4958 -2.9275 33 1 5.5623 3.0423 -3.8245 34 1 3.9592 2.6041 -4.4621 35 1 2.6929 0.7731 -3.3428 36 1 2.7551 1.8067 -1.8954 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307341917.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:14 Heat of formation + Delta-G solvation = 4.343331 kcal Electronic energy + Delta-G solvation = -14910.976902 eV Core-core repulsion = 12622.852318 eV Total energy + Delta-G solvation = -2288.124585 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.94653 -35.83599 -33.17981 -32.08114 -30.43255 -27.17280 -26.50471 -25.04356 -22.66941 -21.83864 -20.10559 -19.33673 -16.56481 -15.80640 -15.11581 -14.91199 -14.46645 -14.11387 -13.65543 -13.38255 -13.12942 -12.72279 -12.44712 -12.24192 -12.11884 -11.70206 -11.37828 -10.99531 -10.82004 -10.46201 -10.40867 -10.36198 -10.09976 -9.93630 -9.46156 -9.18237 -8.49525 -8.19861 -7.36894 -5.99205 -3.95583 3.29188 3.38339 3.41255 4.04846 4.45047 4.91097 5.12372 5.17890 5.28326 5.33457 5.40167 5.50266 5.54830 5.66866 5.75448 5.86666 5.94801 6.05036 6.09145 6.24253 6.31959 6.41570 6.44010 6.52780 6.70068 6.81742 6.87467 7.14139 7.21256 7.27911 7.76011 8.02505 8.30068 8.80497 9.13098 9.64060 11.14540 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036927 B = 0.008742 C = 0.008211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.072855 B = 3202.071687 C = 3409.245672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.181 3.819 3 H 0.002 0.998 4 C -0.492 4.492 5 H 0.081 0.919 6 C 0.066 3.934 7 N -0.902 5.902 8 Si 0.884 3.116 9 H -0.281 1.281 10 H -0.297 1.297 11 H -0.271 1.271 12 N -0.666 5.666 13 C 0.097 3.903 14 H 0.094 0.906 15 C -0.106 4.106 16 C -0.118 4.118 17 C 0.058 3.942 18 N -0.539 5.539 19 C 0.026 3.974 20 C 0.030 3.970 21 H 0.061 0.939 22 H 0.043 0.957 23 H 0.026 0.974 24 H 0.262 0.738 25 H 0.316 0.684 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.027 0.973 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.020 0.980 35 H 0.026 0.974 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.323 4.409 -14.145 15.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.073 3.927 3 H 0.019 0.981 4 C -0.531 4.531 5 H 0.099 0.901 6 C -0.135 4.135 7 N -0.541 5.541 8 Si 0.715 3.285 9 H -0.208 1.208 10 H -0.225 1.225 11 H -0.196 1.196 12 N -0.295 5.295 13 C -0.014 4.014 14 H 0.112 0.888 15 C -0.144 4.144 16 C -0.156 4.156 17 C -0.070 4.070 18 N -0.264 5.264 19 C -0.122 4.122 20 C -0.099 4.099 21 H 0.080 0.920 22 H 0.061 0.939 23 H 0.045 0.955 24 H 0.072 0.928 25 H 0.132 0.868 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.046 0.954 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.038 0.962 35 H 0.044 0.956 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.798 3.930 -13.141 14.232 hybrid contribution -1.393 1.687 -0.885 2.360 sum 2.405 5.617 -14.026 15.299 Atomic orbital electron populations 1.22329 0.99159 1.01561 0.98262 1.19647 0.90449 0.92772 0.89845 0.98097 1.21009 1.31144 1.13258 0.87691 0.90114 1.24948 0.96058 0.96548 0.95954 1.69886 1.46096 1.40363 0.97782 0.86920 0.80734 0.84085 0.76742 1.20759 1.22497 1.19609 1.60646 1.01895 1.60506 1.06458 1.21542 0.91912 0.90339 0.97632 0.88755 1.21547 0.94383 0.99000 0.99479 1.21599 0.98221 0.95630 1.00137 1.22093 0.98005 0.92545 0.94384 1.61879 1.18385 1.03388 1.42728 1.22344 1.01293 0.92230 0.96371 1.22986 0.88779 0.99792 0.98375 0.91951 0.93890 0.95486 0.92790 0.86782 0.90902 0.93099 0.90917 0.91805 0.91269 0.95444 0.91521 0.91643 0.96190 0.95571 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 8.64 37.16 0.32 -3.07 16 2 C 0.18 4.31 2.02 -68.86 -0.14 4.17 16 3 H 0.00 0.04 6.29 -51.93 -0.33 -0.29 16 4 C -0.49 -14.06 9.08 -34.44 -0.31 -14.37 16 5 H 0.08 2.55 8.06 -52.48 -0.42 2.13 16 6 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 7 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 8 Si 0.88 22.27 24.32 -169.99 -4.13 18.13 16 9 H -0.28 -6.87 6.92 56.52 0.39 -6.48 16 10 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 11 H -0.27 -6.55 6.53 56.52 0.37 -6.18 16 12 N -0.67 -13.62 6.05 -100.86 -0.61 -14.23 16 13 C 0.10 1.80 2.43 -67.63 -0.16 1.63 16 14 H 0.09 2.09 7.63 -51.93 -0.40 1.69 16 15 C -0.11 -1.69 5.61 -26.61 -0.15 -1.84 16 16 C -0.12 -1.59 6.09 -26.65 -0.16 -1.75 16 17 C 0.06 0.74 5.46 -3.83 -0.02 0.72 16 18 N -0.54 -7.97 4.91 -242.95 -1.19 -9.17 16 19 C 0.03 0.32 9.59 60.06 0.58 0.89 16 20 C 0.03 0.49 4.70 -3.83 -0.02 0.48 16 21 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 22 H 0.04 0.98 3.43 -51.93 -0.18 0.80 16 23 H 0.03 0.49 8.01 -51.93 -0.42 0.07 16 24 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 25 H 0.32 5.70 7.98 -39.29 -0.31 5.39 16 26 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 31 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.69 8.09 -51.93 -0.42 0.26 16 34 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.03 0.40 8.11 -51.93 -0.42 -0.02 16 36 H 0.07 1.23 7.53 -51.93 -0.39 0.83 16 LS Contribution 275.54 15.07 4.15 4.15 Total: -1.00 -30.33 275.54 -7.44 -37.77 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.27 Total: 1.92 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -0.17 Total: -11.31 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: -1.03 Total: -50.67 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.13 Total: 18.13 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.33 -7.44 -37.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307341917.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.115 kcal (2) G-P(sol) polarization free energy of solvation -30.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds