Wall clock time and date at job start Sun Mar 29 2020 21:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47151 * 2 1 4 4 C 1.50697 * 109.47262 * 119.99951 * 2 1 3 5 5 H 1.08008 * 120.00030 * 119.99527 * 4 2 1 6 6 C 1.37874 * 120.00239 * 300.00213 * 4 2 1 7 7 N 1.31515 * 120.00320 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 119.99840 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.46985 * 90.00319 * 8 6 4 10 10 H 1.48502 * 109.47202 * 210.00442 * 8 6 4 11 11 H 1.48500 * 109.47236 * 330.00632 * 8 6 4 12 12 N 1.46903 * 109.46677 * 239.99753 * 2 1 3 13 13 C 1.46908 * 110.99663 * 155.00709 * 12 2 1 14 14 H 1.09003 * 109.53487 * 33.63204 * 13 12 2 15 15 C 1.53115 * 109.50184 * 153.73659 * 13 12 2 16 16 C 1.53120 * 109.15867 * 177.59758 * 15 13 12 17 17 C 1.53036 * 109.27751 * 302.33751 * 16 15 13 18 18 N 1.46853 * 109.52292 * 59.18190 * 17 16 15 19 19 C 1.46896 * 111.00479 * 174.16031 * 18 17 16 20 20 C 1.46850 * 111.19653 * 298.25856 * 18 17 16 21 21 H 1.08998 * 109.46900 * 185.48873 * 1 2 3 22 22 H 1.09004 * 109.46932 * 305.48410 * 1 2 3 23 23 H 1.09001 * 109.47126 * 65.48531 * 1 2 3 24 24 H 0.96995 * 119.99821 * 179.97438 * 7 6 4 25 25 H 1.00900 * 110.99790 * 31.05799 * 12 2 1 26 26 H 1.09008 * 109.51945 * 297.49251 * 15 13 12 27 27 H 1.08992 * 109.52830 * 57.68825 * 15 13 12 28 28 H 1.09002 * 109.50949 * 62.28045 * 16 15 13 29 29 H 1.09006 * 109.50454 * 182.40312 * 16 15 13 30 30 H 1.08994 * 109.46517 * 179.19417 * 17 16 15 31 31 H 1.08998 * 109.46606 * 299.18014 * 17 16 15 32 32 H 1.08999 * 109.47625 * 184.20875 * 19 18 17 33 33 H 1.09004 * 109.46832 * 304.21555 * 19 18 17 34 34 H 1.09003 * 109.46850 * 64.21056 * 19 18 17 35 35 H 1.08994 * 109.46628 * 301.72253 * 20 18 17 36 36 H 1.09001 * 109.46171 * 181.75619 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8596 3.5565 8 14 0.6259 1.2797 2.6541 9 1 -0.8020 0.8743 2.6994 10 1 0.9773 1.9953 3.9070 11 1 0.8490 2.1772 1.4922 12 7 2.0196 -0.6926 -1.1995 13 6 3.3671 -0.2318 -1.5603 14 1 3.9238 0.0109 -0.6551 15 6 4.0967 -1.3372 -2.3284 16 6 5.4769 -0.8275 -2.7525 17 6 5.3104 0.4344 -3.6022 18 7 4.6077 1.4617 -2.8227 19 6 4.5520 2.7330 -3.5565 20 6 3.2616 1.0129 -2.4445 21 1 -0.3633 -1.0229 0.0983 22 1 -0.3633 0.5966 0.8368 23 1 -0.3633 0.4264 -0.9350 24 1 1.9033 -0.5280 4.4375 25 1 1.3792 -0.5766 -1.9706 26 1 4.2124 -2.2110 -1.6871 27 1 3.5205 -1.6073 -3.2133 28 1 6.0669 -0.5942 -1.8662 29 1 5.9846 -1.5951 -3.3367 30 1 6.2919 0.8080 -3.8938 31 1 4.7319 0.1974 -4.4950 32 1 4.0932 3.4958 -2.9275 33 1 5.5623 3.0423 -3.8245 34 1 3.9592 2.6041 -4.4621 35 1 2.6929 0.7731 -3.3428 36 1 2.7551 1.8067 -1.8954 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307341917.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:13 Heat of formation + Delta-G solvation = -19.305753 kcal Electronic energy + Delta-G solvation = -14912.002404 eV Core-core repulsion = 12622.852318 eV Total energy + Delta-G solvation = -2289.150086 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.22639 -37.47118 -34.79077 -33.79592 -32.04801 -28.66514 -27.58711 -27.14695 -23.87418 -23.12931 -22.01494 -20.63854 -18.72829 -17.11439 -16.80666 -16.37078 -15.68920 -15.65252 -15.12091 -14.88951 -14.66946 -14.43167 -14.02520 -13.66741 -13.18549 -13.06549 -12.77154 -12.62849 -12.48019 -12.24937 -12.08105 -11.70649 -11.56809 -11.52106 -11.22606 -11.16282 -10.70955 -9.27886 -9.04419 -8.26191 -6.27669 1.28658 1.34400 1.44190 2.32422 2.93833 3.08357 3.50105 3.92820 3.94387 4.16638 4.20082 4.38633 4.49326 4.53133 4.56589 4.61232 4.63324 4.70506 4.80401 4.84988 4.92949 4.98080 4.99314 5.06955 5.17598 5.36565 5.46662 5.47858 5.69111 5.99559 6.15296 6.19875 6.52838 6.77917 6.96964 7.36444 8.91655 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036927 B = 0.008742 C = 0.008211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.072855 B = 3202.071687 C = 3409.245672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.187 3.813 3 H -0.006 1.006 4 C -0.497 4.497 5 H 0.030 0.970 6 C 0.005 3.995 7 N -0.953 5.953 8 Si 0.952 3.048 9 H -0.263 1.263 10 H -0.299 1.299 11 H -0.252 1.252 12 N -0.675 5.675 13 C 0.097 3.903 14 H 0.046 0.954 15 C -0.101 4.101 16 C -0.114 4.114 17 C 0.060 3.940 18 N -0.562 5.562 19 C 0.027 3.973 20 C 0.043 3.957 21 H 0.055 0.945 22 H 0.036 0.964 23 H 0.069 0.931 24 H 0.264 0.736 25 H 0.335 0.665 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.032 0.968 35 H 0.044 0.956 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.542 5.987 -16.745 17.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.078 3.922 3 H 0.011 0.989 4 C -0.536 4.536 5 H 0.048 0.952 6 C -0.191 4.191 7 N -0.594 5.594 8 Si 0.779 3.221 9 H -0.189 1.189 10 H -0.227 1.227 11 H -0.176 1.176 12 N -0.305 5.305 13 C -0.013 4.013 14 H 0.064 0.936 15 C -0.139 4.139 16 C -0.152 4.152 17 C -0.068 4.068 18 N -0.287 5.287 19 C -0.121 4.121 20 C -0.087 4.087 21 H 0.075 0.925 22 H 0.055 0.945 23 H 0.087 0.913 24 H 0.073 0.927 25 H 0.153 0.847 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.019 5.509 -15.786 16.990 hybrid contribution -1.037 1.100 -0.106 1.515 sum 1.982 6.608 -15.892 17.325 Atomic orbital electron populations 1.22210 0.96916 1.01542 1.00232 1.19407 0.92048 0.91615 0.89128 0.98861 1.21266 1.30183 1.11870 0.90269 0.95189 1.25839 0.97742 1.00128 0.95402 1.70055 1.48188 1.42678 0.98486 0.85815 0.79283 0.79911 0.77078 1.18925 1.22702 1.17618 1.60485 1.03115 1.60595 1.06344 1.21461 0.90466 0.92809 0.96594 0.93570 1.21488 0.95983 0.97202 0.99232 1.21590 0.96389 0.97140 1.00074 1.22143 0.99082 0.91466 0.94093 1.61841 1.17450 1.04951 1.44488 1.22384 1.02684 0.90642 0.96375 1.22695 0.90085 0.97723 0.98181 0.92546 0.94530 0.91265 0.92693 0.84699 0.93292 0.91287 0.92786 0.89061 0.89155 0.94080 0.91980 0.89858 0.94937 0.93781 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.24 8.64 71.98 0.62 -5.62 16 2 C 0.19 8.85 2.02 44.17 0.09 8.94 16 3 H -0.01 -0.30 6.29 -2.39 -0.02 -0.31 16 4 C -0.50 -29.46 9.08 25.60 0.23 -29.23 16 5 H 0.03 2.02 8.06 -2.91 -0.02 1.99 16 6 C 0.01 0.31 5.45 84.65 0.46 0.77 16 7 N -0.95 -61.48 13.96 21.45 0.30 -61.19 16 8 Si 0.95 45.97 24.32 68.60 1.67 47.64 16 9 H -0.26 -11.95 6.92 99.48 0.69 -11.26 16 10 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 11 H -0.25 -11.31 6.53 99.48 0.65 -10.66 16 12 N -0.67 -27.39 6.05 -473.01 -2.86 -30.26 16 13 C 0.10 3.64 2.43 44.97 0.11 3.75 16 14 H 0.05 2.15 7.63 -2.39 -0.02 2.13 16 15 C -0.10 -3.16 5.61 30.67 0.17 -2.99 16 16 C -0.11 -2.91 6.09 30.65 0.19 -2.72 16 17 C 0.06 1.35 5.46 86.32 0.47 1.82 16 18 N -0.56 -15.43 4.91 -922.57 -4.53 -19.96 16 19 C 0.03 0.57 9.59 127.69 1.22 1.80 16 20 C 0.04 1.33 4.70 86.33 0.41 1.74 16 21 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 22 H 0.04 1.55 3.43 -2.39 -0.01 1.54 16 23 H 0.07 2.26 8.01 -2.39 -0.02 2.25 16 24 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 25 H 0.33 11.37 7.98 -89.69 -0.72 10.66 16 26 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 27 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.09 1.70 8.08 -2.39 -0.02 1.68 16 31 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 1.46 8.09 -2.38 -0.02 1.44 16 34 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.04 1.20 8.11 -2.39 -0.02 1.18 16 36 H 0.05 1.86 7.53 -2.39 -0.02 1.84 16 Total: -1.00 -68.28 275.54 -1.21 -69.49 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.24 Total: 16.02 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: 3.98 Total: -21.75 kcal Atomic # 7 Polarization: -104.31 SS G_CDS: -7.09 Total: -111.40 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.67 Total: 47.64 kcal Total: -68.28 -1.21 -69.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307341917.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.185 kcal (2) G-P(sol) polarization free energy of solvation -68.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds