Wall clock time and date at job start Sun Mar 29 2020 21:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00159 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00675 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46908 * 110.99837 * 84.99962 * 12 2 1 14 14 H 1.09002 * 109.50247 * 325.07922 * 13 12 2 15 15 C 1.53121 * 109.50182 * 205.00207 * 13 12 2 16 16 C 1.53116 * 109.15750 * 182.40464 * 15 13 12 17 17 C 1.53034 * 109.28200 * 57.65631 * 16 15 13 18 18 N 1.46846 * 109.52055 * 300.82000 * 17 16 15 19 19 C 1.46900 * 110.99856 * 185.83782 * 18 17 16 20 20 C 1.46843 * 111.19837 * 61.74230 * 18 17 16 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 25 25 H 1.00903 * 111.00093 * 321.05235 * 12 2 1 26 26 H 1.08998 * 109.52281 * 302.31009 * 15 13 12 27 27 H 1.08998 * 109.52361 * 62.43805 * 15 13 12 28 28 H 1.09005 * 109.50313 * 177.59592 * 16 15 13 29 29 H 1.08997 * 109.50752 * 297.67187 * 16 15 13 30 30 H 1.09007 * 109.46259 * 60.83206 * 17 16 15 31 31 H 1.08993 * 109.46617 * 180.80919 * 17 16 15 32 32 H 1.08996 * 109.47494 * 63.95159 * 19 18 17 33 33 H 1.09004 * 109.46864 * 183.95794 * 19 18 17 34 34 H 1.09009 * 109.47323 * 303.95027 * 19 18 17 35 35 H 1.09000 * 109.46297 * 178.24071 * 20 18 17 36 36 H 1.09003 * 109.46788 * 58.27513 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.8063 -1.1207 4.0082 10 1 1.8260 -0.4204 5.2205 11 1 1.8259 -2.5201 4.0078 12 7 2.0197 -0.6925 -1.1993 13 6 2.0825 0.2226 -2.3468 14 1 1.2586 0.9341 -2.2904 15 6 1.9771 -0.5796 -3.6468 16 6 2.1037 0.3744 -4.8377 17 6 3.4338 1.1253 -4.7445 18 7 3.4855 1.8774 -3.4843 19 6 4.6875 2.7197 -3.4227 20 6 3.4133 0.9779 -2.3258 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 0.7081 1.1610 3.4844 25 1 1.4496 -1.4979 -1.4100 26 1 2.7778 -1.3182 -3.6850 27 1 1.0125 -1.0858 -3.6853 28 1 2.0722 -0.1961 -5.7660 29 1 1.2802 1.0883 -4.8213 30 1 4.2570 0.4113 -4.7753 31 1 3.5206 1.8159 -5.5832 32 1 4.6441 3.4727 -4.2095 33 1 4.7371 3.2115 -2.4512 34 1 5.5732 2.0996 -3.5617 35 1 3.4853 1.5614 -1.4079 36 1 4.2365 0.2646 -2.3679 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307341918.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:16 Heat of formation + Delta-G solvation = -4.915901 kcal Electronic energy + Delta-G solvation = -14796.125516 eV Core-core repulsion = 12507.599421 eV Total energy + Delta-G solvation = -2288.526095 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.83336 -35.67872 -33.23226 -32.00084 -29.71022 -26.84682 -26.31447 -25.07221 -22.66824 -21.84862 -19.89381 -19.32691 -16.32208 -15.50528 -14.98347 -14.70806 -14.50938 -14.25666 -13.58837 -13.20752 -12.66835 -12.38120 -12.33571 -11.96241 -11.63944 -11.37898 -11.27238 -10.95364 -10.80891 -10.71842 -10.36822 -10.33323 -10.10982 -9.99865 -9.57075 -8.92351 -8.31478 -8.07225 -7.18726 -5.93859 -3.97190 3.36686 3.40537 3.43886 4.14541 4.47905 5.00402 5.10426 5.18973 5.36840 5.38178 5.53390 5.60179 5.67903 5.76691 5.90743 5.99146 6.01185 6.11011 6.18079 6.26640 6.32881 6.62923 6.71386 6.76235 6.89418 7.18012 7.29094 7.34195 7.50285 7.79979 7.94645 8.34277 8.60832 8.68637 9.09980 9.67960 11.13046 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042805 B = 0.007516 C = 0.007026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.970008 B = 3724.654447 C = 3984.162549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.212 3.788 3 H 0.034 0.966 4 C -0.495 4.495 5 H 0.061 0.939 6 C 0.055 3.945 7 N -0.897 5.897 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.683 5.683 13 C 0.092 3.908 14 H 0.044 0.956 15 C -0.122 4.122 16 C -0.113 4.113 17 C 0.057 3.943 18 N -0.547 5.547 19 C 0.028 3.972 20 C 0.071 3.929 21 H 0.026 0.974 22 H 0.005 0.995 23 H 0.088 0.912 24 H 0.260 0.740 25 H 0.327 0.673 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.030 0.970 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.021 0.979 35 H 0.077 0.923 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.316 0.687 -12.457 12.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.104 3.896 3 H 0.052 0.948 4 C -0.534 4.534 5 H 0.079 0.921 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.313 5.313 13 C -0.019 4.019 14 H 0.062 0.938 15 C -0.160 4.160 16 C -0.152 4.152 17 C -0.071 4.071 18 N -0.272 5.272 19 C -0.120 4.120 20 C -0.057 4.057 21 H 0.045 0.955 22 H 0.024 0.976 23 H 0.107 0.893 24 H 0.069 0.931 25 H 0.144 0.856 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.040 0.960 35 H 0.096 0.904 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.500 1.193 -12.114 12.666 hybrid contribution 0.027 -0.820 0.691 1.072 sum 3.527 0.374 -11.423 11.961 Atomic orbital electron populations 1.22425 1.00811 0.99066 1.00480 1.19192 0.89522 0.94404 0.86443 0.94777 1.21141 1.30181 1.12392 0.89701 0.92090 1.24947 0.95390 0.95217 0.98978 1.69879 1.37275 1.23207 1.23363 0.86590 0.79137 0.79622 0.82177 1.20364 1.21476 1.20412 1.60719 1.58221 1.08974 1.03429 1.21350 0.96092 0.94261 0.90158 0.93799 1.21783 1.01601 0.97983 0.94673 1.21539 0.97649 0.98207 0.97789 1.22056 0.97043 0.95871 0.92136 1.61864 1.38668 1.24054 1.02598 1.22307 0.90334 0.96847 1.02525 1.22068 0.97388 0.94000 0.92261 0.95459 0.97587 0.89329 0.93061 0.85561 0.91804 0.92246 0.91891 0.91319 0.95223 0.91391 0.91855 0.91305 0.96010 0.90421 0.94633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 8.92 37.16 0.33 -3.81 16 2 C 0.21 5.40 2.39 -68.87 -0.16 5.24 16 3 H 0.03 0.96 7.14 -51.93 -0.37 0.59 16 4 C -0.50 -13.88 8.84 -34.44 -0.30 -14.18 16 5 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 6 C 0.06 1.55 5.30 -17.82 -0.09 1.45 16 7 N -0.90 -26.02 11.32 55.43 0.63 -25.39 16 8 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.68 -14.71 6.04 -100.86 -0.61 -15.32 16 13 C 0.09 1.72 2.46 -67.63 -0.17 1.55 16 14 H 0.04 0.90 7.12 -51.93 -0.37 0.53 16 15 C -0.12 -1.84 5.27 -26.61 -0.14 -1.98 16 16 C -0.11 -1.46 6.09 -26.65 -0.16 -1.63 16 17 C 0.06 0.75 5.46 -3.84 -0.02 0.73 16 18 N -0.55 -8.48 4.91 -242.96 -1.19 -9.67 16 19 C 0.03 0.37 9.62 60.06 0.58 0.95 16 20 C 0.07 1.29 4.95 -3.84 -0.02 1.27 16 21 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 22 H 0.01 0.12 7.43 -51.93 -0.39 -0.27 16 23 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 24 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.33 6.70 8.10 -39.29 -0.32 6.38 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.03 0.39 8.14 -51.92 -0.42 -0.03 16 31 H 0.07 0.78 8.12 -51.93 -0.42 0.35 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.92 8.02 -51.93 -0.42 0.50 16 34 H 0.02 0.27 8.14 -51.92 -0.42 -0.15 16 35 H 0.08 1.59 7.35 -51.93 -0.38 1.21 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 281.17 15.07 4.24 4.24 Total: -1.00 -28.67 281.17 -8.45 -37.12 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -6.33 Total: 2.72 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -0.16 Total: -10.41 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -1.18 Total: -50.39 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.67 -8.45 -37.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307341918.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.206 kcal (2) G-P(sol) polarization free energy of solvation -28.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds