Wall clock time and date at job start Sun Mar 29 2020 21:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00159 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00675 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46908 * 110.99837 * 84.99962 * 12 2 1 14 14 H 1.09002 * 109.50247 * 325.07922 * 13 12 2 15 15 C 1.53121 * 109.50182 * 205.00207 * 13 12 2 16 16 C 1.53116 * 109.15750 * 182.40464 * 15 13 12 17 17 C 1.53034 * 109.28200 * 57.65631 * 16 15 13 18 18 N 1.46846 * 109.52055 * 300.82000 * 17 16 15 19 19 C 1.46900 * 110.99856 * 185.83782 * 18 17 16 20 20 C 1.46843 * 111.19837 * 61.74230 * 18 17 16 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 25 25 H 1.00903 * 111.00093 * 321.05235 * 12 2 1 26 26 H 1.08998 * 109.52281 * 302.31009 * 15 13 12 27 27 H 1.08998 * 109.52361 * 62.43805 * 15 13 12 28 28 H 1.09005 * 109.50313 * 177.59592 * 16 15 13 29 29 H 1.08997 * 109.50752 * 297.67187 * 16 15 13 30 30 H 1.09007 * 109.46259 * 60.83206 * 17 16 15 31 31 H 1.08993 * 109.46617 * 180.80919 * 17 16 15 32 32 H 1.08996 * 109.47494 * 63.95159 * 19 18 17 33 33 H 1.09004 * 109.46864 * 183.95794 * 19 18 17 34 34 H 1.09009 * 109.47323 * 303.95027 * 19 18 17 35 35 H 1.09000 * 109.46297 * 178.24071 * 20 18 17 36 36 H 1.09003 * 109.46788 * 58.27513 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.8063 -1.1207 4.0082 10 1 1.8260 -0.4204 5.2205 11 1 1.8259 -2.5201 4.0078 12 7 2.0197 -0.6925 -1.1993 13 6 2.0825 0.2226 -2.3468 14 1 1.2586 0.9341 -2.2904 15 6 1.9771 -0.5796 -3.6468 16 6 2.1037 0.3744 -4.8377 17 6 3.4338 1.1253 -4.7445 18 7 3.4855 1.8774 -3.4843 19 6 4.6875 2.7197 -3.4227 20 6 3.4133 0.9779 -2.3258 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 0.7081 1.1610 3.4844 25 1 1.4496 -1.4979 -1.4100 26 1 2.7778 -1.3182 -3.6850 27 1 1.0125 -1.0858 -3.6853 28 1 2.0722 -0.1961 -5.7660 29 1 1.2802 1.0883 -4.8213 30 1 4.2570 0.4113 -4.7753 31 1 3.5206 1.8159 -5.5832 32 1 4.6441 3.4727 -4.2095 33 1 4.7371 3.2115 -2.4512 34 1 5.5732 2.0996 -3.5617 35 1 3.4853 1.5614 -1.4079 36 1 4.2365 0.2646 -2.3679 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307341918.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:16 Heat of formation + Delta-G solvation = -25.078782 kcal Electronic energy + Delta-G solvation = -14796.999844 eV Core-core repulsion = 12507.599421 eV Total energy + Delta-G solvation = -2289.400423 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.15692 -37.40155 -34.89298 -33.56593 -31.37038 -28.45869 -27.56408 -27.20421 -23.96260 -23.22143 -21.76713 -20.66135 -18.35591 -16.89490 -16.76506 -16.30552 -15.77644 -15.44778 -15.31391 -14.73270 -14.23498 -13.95320 -13.72749 -13.36835 -13.15004 -13.09939 -12.85699 -12.66537 -12.47111 -12.27308 -12.08970 -12.06590 -11.70061 -11.45021 -11.13249 -10.96946 -10.47713 -9.28081 -8.97987 -8.08781 -6.20488 1.42841 1.44763 1.52589 2.43961 2.93879 3.19179 3.69364 3.86081 3.98027 4.15428 4.35084 4.39376 4.54598 4.61633 4.64984 4.73862 4.79694 4.84207 4.88757 4.96862 4.98202 5.01885 5.08940 5.16336 5.26996 5.38201 5.48007 5.69339 5.82920 6.08989 6.20505 6.29751 6.67676 6.85372 6.96039 7.49618 8.96688 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042805 B = 0.007516 C = 0.007026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.970008 B = 3724.654447 C = 3984.162549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.220 3.780 3 H -0.002 1.002 4 C -0.517 4.517 5 H 0.055 0.945 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.961 3.039 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.684 5.684 13 C 0.092 3.908 14 H 0.022 0.978 15 C -0.115 4.115 16 C -0.109 4.109 17 C 0.054 3.946 18 N -0.559 5.559 19 C 0.027 3.973 20 C 0.081 3.919 21 H 0.033 0.967 22 H 0.021 0.979 23 H 0.061 0.939 24 H 0.261 0.739 25 H 0.334 0.666 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.034 0.966 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.029 0.971 35 H 0.041 0.959 36 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.731 -0.078 -13.897 14.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.111 3.889 3 H 0.016 0.984 4 C -0.555 4.555 5 H 0.073 0.927 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.787 3.213 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.195 1.195 12 N -0.315 5.315 13 C -0.018 4.018 14 H 0.040 0.960 15 C -0.153 4.153 16 C -0.147 4.147 17 C -0.073 4.073 18 N -0.285 5.285 19 C -0.121 4.121 20 C -0.047 4.047 21 H 0.053 0.947 22 H 0.040 0.960 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.152 0.848 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.113 0.887 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 3.921 0.424 -13.579 14.140 hybrid contribution -0.087 -0.536 1.086 1.215 sum 3.834 -0.112 -12.493 13.068 Atomic orbital electron populations 1.22233 1.00143 0.99225 0.99872 1.18905 0.89871 0.92504 0.87613 0.98422 1.21444 1.30482 1.12488 0.91102 0.92688 1.25739 0.95470 0.95876 1.01942 1.70015 1.38009 1.24315 1.24024 0.85570 0.78583 0.78740 0.78452 1.19988 1.20954 1.19504 1.60596 1.57931 1.09495 1.03492 1.21401 0.95472 0.93923 0.91011 0.96004 1.21735 1.02264 0.98025 0.93306 1.21553 0.97314 0.97857 0.97968 1.22197 0.97300 0.96430 0.91389 1.61871 1.40115 1.23890 1.02611 1.22372 0.89752 0.97072 1.02874 1.21814 0.96894 0.93688 0.92346 0.94740 0.95990 0.92031 0.93014 0.84762 0.91443 0.91333 0.88658 0.91834 0.94804 0.88864 0.89376 0.92490 0.95219 0.94033 0.95270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.75 8.92 71.98 0.64 -7.11 16 2 C 0.22 11.50 2.39 44.17 0.11 11.61 16 3 H 0.00 -0.13 7.14 -2.39 -0.02 -0.14 16 4 C -0.52 -29.41 8.84 25.60 0.23 -29.19 16 5 H 0.05 3.13 7.81 -2.91 -0.02 3.10 16 6 C 0.01 0.44 5.30 84.65 0.45 0.89 16 7 N -0.92 -54.53 11.32 21.44 0.24 -54.29 16 8 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 9 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 12 N -0.68 -29.78 6.04 -473.02 -2.86 -32.64 16 13 C 0.09 3.45 2.46 44.97 0.11 3.56 16 14 H 0.02 0.92 7.12 -2.39 -0.02 0.90 16 15 C -0.12 -3.24 5.27 30.67 0.16 -3.08 16 16 C -0.11 -2.47 6.09 30.64 0.19 -2.29 16 17 C 0.05 1.27 5.46 86.32 0.47 1.74 16 18 N -0.56 -16.78 4.91 -922.59 -4.53 -21.32 16 19 C 0.03 0.68 9.62 127.69 1.23 1.91 16 20 C 0.08 3.00 4.95 86.33 0.43 3.43 16 21 H 0.03 1.61 8.13 -2.39 -0.02 1.59 16 22 H 0.02 0.97 7.43 -2.39 -0.02 0.96 16 23 H 0.06 3.42 6.07 -2.38 -0.01 3.40 16 24 H 0.26 14.66 8.31 -92.70 -0.77 13.89 16 25 H 0.33 13.55 8.10 -89.69 -0.73 12.82 16 26 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.09 1.61 8.14 -2.38 -0.02 1.60 16 29 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.09 1.76 8.12 -2.39 -0.02 1.74 16 32 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.06 1.53 8.02 -2.38 -0.02 1.51 16 34 H 0.03 0.69 8.14 -2.38 -0.02 0.67 16 35 H 0.04 1.80 7.35 -2.39 -0.02 1.78 16 36 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -62.13 281.17 -0.81 -62.93 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.30 Total: 17.07 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: 4.01 Total: -18.52 kcal Atomic # 7 Polarization: -101.10 SS G_CDS: -7.15 Total: -108.24 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -62.13 -0.81 -62.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307341918.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.855 kcal (2) G-P(sol) polarization free energy of solvation -62.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds