Wall clock time and date at job start Sun Mar 29 2020 22:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36933 * 119.99856 * 2 1 4 4 H 1.08006 * 120.00243 * 156.23570 * 3 2 1 5 5 C 1.38810 * 120.00443 * 336.23850 * 3 2 1 6 6 N 1.31617 * 120.00056 * 330.58043 * 5 3 2 7 7 Si 1.86798 * 120.00287 * 150.57839 * 5 3 2 8 8 H 1.48491 * 109.47352 * 270.00160 * 7 5 3 9 9 H 1.48499 * 109.47112 * 30.00175 * 7 5 3 10 10 H 1.48498 * 109.47175 * 149.99933 * 7 5 3 11 11 C 1.46498 * 120.00010 * 180.02562 * 2 1 3 12 12 H 1.08999 * 110.36136 * 180.70537 * 11 2 1 13 13 C 1.54463 * 110.40557 * 58.36567 * 11 2 1 14 14 C 1.54362 * 103.04840 * 241.58606 * 13 11 2 15 15 C 1.52998 * 110.32364 * 136.71783 * 14 13 11 16 16 C 1.53005 * 110.32302 * 258.92163 * 14 13 11 17 17 O 1.45951 * 105.06715 * 17.81901 * 14 13 11 18 18 C 1.34852 * 108.42470 * 327.51931 * 17 14 13 19 19 O 1.20829 * 126.09677 * 213.43422 * 18 17 14 20 20 H 1.09001 * 109.47066 * 93.07811 * 1 2 3 21 21 H 1.09000 * 109.47494 * 213.08006 * 1 2 3 22 22 H 1.08998 * 109.47352 * 333.08359 * 1 2 3 23 23 H 0.97010 * 119.99837 * 354.57183 * 6 5 3 24 24 H 1.09003 * 110.70313 * 359.97438 * 13 11 2 25 25 H 1.09001 * 110.70087 * 123.19867 * 13 11 2 26 26 H 1.09005 * 109.47133 * 60.00403 * 15 14 13 27 27 H 1.09000 * 109.47274 * 179.97438 * 15 14 13 28 28 H 1.09002 * 109.47424 * 300.00080 * 15 14 13 29 29 H 1.08998 * 109.47143 * 60.00160 * 16 14 13 30 30 H 1.09000 * 109.46863 * 179.97438 * 16 14 13 31 31 H 1.08990 * 109.47360 * 299.99572 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1610 1.2256 0.3769 5 6 1.5439 2.3371 -0.4844 6 7 0.6286 2.2527 -1.4265 7 14 2.0275 4.0062 0.2009 8 1 1.1599 4.3357 1.3600 9 1 3.4459 3.9693 0.6391 10 1 1.8614 5.0405 -0.8516 11 6 2.1975 -1.2687 -0.0006 12 1 3.2720 -1.0863 0.0121 13 6 1.8092 -2.1142 -1.2335 14 6 1.1950 -3.3838 -0.6061 15 6 -0.0772 -3.7848 -1.3554 16 6 2.2083 -4.5300 -0.6260 17 8 0.8774 -3.0119 0.7690 18 6 1.7912 -2.1137 1.1895 19 8 2.2135 -2.0020 2.3161 20 1 -0.3633 -0.0552 -1.0262 21 1 -0.3634 -0.8611 0.5609 22 1 -0.3634 0.9163 0.4652 23 1 0.4336 1.3960 -1.8378 24 1 1.0726 -1.5908 -1.8433 25 1 2.6915 -2.3639 -1.8229 26 1 0.1638 -3.9850 -2.3995 27 1 -0.4987 -4.6819 -0.9018 28 1 -0.8031 -2.9735 -1.2993 29 1 3.0922 -4.2435 -0.0561 30 1 1.7610 -5.4182 -0.1799 31 1 2.4938 -4.7447 -1.6557 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307370138.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:09 Heat of formation + Delta-G solvation = -63.680570 kcal Electronic energy + Delta-G solvation = -15127.872837 eV Core-core repulsion = 12603.246758 eV Total energy + Delta-G solvation = -2524.626079 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.69909 -37.20241 -35.77719 -33.35100 -31.71444 -28.90301 -27.45045 -26.23496 -24.20545 -22.29300 -20.76494 -19.42106 -17.68635 -16.30553 -15.97977 -15.61970 -14.76165 -14.03347 -13.68407 -13.46044 -13.41699 -13.15359 -12.50234 -12.34979 -12.11458 -11.73404 -11.54692 -11.44649 -10.87143 -10.85835 -10.61746 -10.51342 -10.17236 -10.07125 -9.80574 -9.58033 -8.42339 -7.12464 -6.20463 -3.34938 2.46585 3.49075 3.51215 3.66032 3.68339 4.50772 4.56653 4.75763 4.80114 4.97810 5.17863 5.32144 5.43715 5.51355 5.62007 5.71300 5.83889 5.85125 6.02896 6.17130 6.24200 6.38823 6.45928 6.74208 6.99494 7.21315 7.85404 8.04146 8.43341 8.92203 9.69270 10.02131 11.07843 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.046458 B = 0.009741 C = 0.008935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.552515 B = 2873.794919 C = 3133.079983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.128 3.872 2 N -0.573 5.573 3 C -0.369 4.369 4 H 0.063 0.937 5 C -0.013 4.013 6 N -0.905 5.905 7 Si 1.067 2.933 8 H -0.291 1.291 9 H -0.290 1.290 10 H -0.289 1.289 11 C 0.125 3.875 12 H 0.102 0.898 13 C -0.166 4.166 14 C 0.104 3.896 15 C -0.139 4.139 16 C -0.162 4.162 17 O -0.357 6.357 18 C 0.469 3.531 19 O -0.459 6.459 20 H 0.018 0.982 21 H 0.020 0.980 22 H 0.057 0.943 23 H 0.270 0.730 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.737 -11.030 -2.332 11.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.297 5.297 3 C -0.497 4.497 4 H 0.081 0.919 5 C -0.217 4.217 6 N -0.543 5.543 7 Si 0.896 3.104 8 H -0.218 1.218 9 H -0.216 1.216 10 H -0.215 1.215 11 C 0.014 3.986 12 H 0.120 0.880 13 C -0.206 4.206 14 C 0.067 3.933 15 C -0.196 4.196 16 C -0.219 4.219 17 O -0.276 6.276 18 C 0.307 3.693 19 O -0.340 6.340 20 H 0.036 0.964 21 H 0.039 0.961 22 H 0.076 0.924 23 H 0.082 0.918 24 H 0.113 0.887 25 H 0.103 0.897 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.422 -9.398 -1.725 9.565 hybrid contribution 0.373 -1.627 0.033 1.669 sum 0.795 -11.025 -1.692 11.183 Atomic orbital electron populations 1.21082 0.83110 0.99361 0.98103 1.43792 1.01149 0.99717 1.84997 1.20035 1.01360 0.86360 1.41950 0.91873 1.25854 0.98423 1.02070 0.95324 1.70781 1.35334 1.28356 1.19856 0.83508 0.75510 0.75436 0.75966 1.21846 1.21625 1.21530 1.21639 0.99144 0.87878 0.89978 0.87991 1.23584 1.02372 0.94943 0.99726 1.22864 0.96339 0.95205 0.78933 1.21837 0.95922 1.02413 0.99441 1.22255 0.98600 0.97996 1.03042 1.87289 1.49225 1.60008 1.31036 1.24772 0.74951 0.78761 0.90835 1.90591 1.50899 1.68991 1.23548 0.96360 0.96096 0.92442 0.91845 0.88739 0.89736 0.90474 0.91807 0.91181 0.92068 0.91522 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.08 8.12 59.84 0.49 3.57 16 2 N -0.57 -14.41 2.72 -173.48 -0.47 -14.88 16 3 C -0.37 -10.28 9.41 -15.06 -0.14 -10.42 16 4 H 0.06 1.78 7.96 -52.48 -0.42 1.36 16 5 C -0.01 -0.37 4.61 -17.43 -0.08 -0.45 16 6 N -0.90 -26.38 12.73 55.49 0.71 -25.67 16 7 Si 1.07 25.24 30.01 -169.99 -5.10 20.14 16 8 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 9 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 C 0.13 2.64 3.52 -67.92 -0.24 2.40 16 12 H 0.10 2.14 7.92 -51.93 -0.41 1.73 16 13 C -0.17 -2.75 5.80 -25.25 -0.15 -2.90 16 14 C 0.10 1.52 1.25 -89.90 -0.11 1.41 16 15 C -0.14 -1.68 8.82 37.16 0.33 -1.35 16 16 C -0.16 -1.89 8.70 37.16 0.32 -1.57 16 17 O -0.36 -6.80 9.96 -40.52 -0.40 -7.20 16 18 C 0.47 10.10 6.91 36.40 0.25 10.36 16 19 O -0.46 -11.20 18.00 -18.29 -0.33 -11.53 16 20 H 0.02 0.43 6.53 -51.93 -0.34 0.09 16 21 H 0.02 0.46 6.69 -51.93 -0.35 0.11 16 22 H 0.06 1.50 7.26 -51.93 -0.38 1.13 16 23 H 0.27 7.82 6.36 -40.82 -0.26 7.56 16 24 H 0.09 1.69 6.89 -51.93 -0.36 1.33 16 25 H 0.08 1.19 7.81 -51.93 -0.41 0.78 16 26 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.76 7.94 -51.93 -0.41 0.35 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 257.95 15.07 3.89 3.89 Total: -1.00 -31.78 257.95 -5.28 -37.06 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -4.24 Total: -2.85 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 0.67 Total: 1.04 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.24 Total: -40.56 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.73 Total: -18.73 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -5.10 Total: 20.14 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.78 -5.28 -37.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307370138.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.623 kcal (2) G-P(sol) polarization free energy of solvation -31.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds