Wall clock time and date at job start Sun Mar 29 2020 22:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36933 * 119.99856 * 2 1 4 4 H 1.08006 * 120.00243 * 156.23570 * 3 2 1 5 5 C 1.38810 * 120.00443 * 336.23850 * 3 2 1 6 6 N 1.31617 * 120.00056 * 330.58043 * 5 3 2 7 7 Si 1.86798 * 120.00287 * 150.57839 * 5 3 2 8 8 H 1.48491 * 109.47352 * 270.00160 * 7 5 3 9 9 H 1.48499 * 109.47112 * 30.00175 * 7 5 3 10 10 H 1.48498 * 109.47175 * 149.99933 * 7 5 3 11 11 C 1.46498 * 120.00010 * 180.02562 * 2 1 3 12 12 H 1.08999 * 110.36136 * 180.70537 * 11 2 1 13 13 C 1.54463 * 110.40557 * 58.36567 * 11 2 1 14 14 C 1.54362 * 103.04840 * 241.58606 * 13 11 2 15 15 C 1.52998 * 110.32364 * 136.71783 * 14 13 11 16 16 C 1.53005 * 110.32302 * 258.92163 * 14 13 11 17 17 O 1.45951 * 105.06715 * 17.81901 * 14 13 11 18 18 C 1.34852 * 108.42470 * 327.51931 * 17 14 13 19 19 O 1.20829 * 126.09677 * 213.43422 * 18 17 14 20 20 H 1.09001 * 109.47066 * 93.07811 * 1 2 3 21 21 H 1.09000 * 109.47494 * 213.08006 * 1 2 3 22 22 H 1.08998 * 109.47352 * 333.08359 * 1 2 3 23 23 H 0.97010 * 119.99837 * 354.57183 * 6 5 3 24 24 H 1.09003 * 110.70313 * 359.97438 * 13 11 2 25 25 H 1.09001 * 110.70087 * 123.19867 * 13 11 2 26 26 H 1.09005 * 109.47133 * 60.00403 * 15 14 13 27 27 H 1.09000 * 109.47274 * 179.97438 * 15 14 13 28 28 H 1.09002 * 109.47424 * 300.00080 * 15 14 13 29 29 H 1.08998 * 109.47143 * 60.00160 * 16 14 13 30 30 H 1.09000 * 109.46863 * 179.97438 * 16 14 13 31 31 H 1.08990 * 109.47360 * 299.99572 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1610 1.2256 0.3769 5 6 1.5439 2.3371 -0.4844 6 7 0.6286 2.2527 -1.4265 7 14 2.0275 4.0062 0.2009 8 1 1.1599 4.3357 1.3600 9 1 3.4459 3.9693 0.6391 10 1 1.8614 5.0405 -0.8516 11 6 2.1975 -1.2687 -0.0006 12 1 3.2720 -1.0863 0.0121 13 6 1.8092 -2.1142 -1.2335 14 6 1.1950 -3.3838 -0.6061 15 6 -0.0772 -3.7848 -1.3554 16 6 2.2083 -4.5300 -0.6260 17 8 0.8774 -3.0119 0.7690 18 6 1.7912 -2.1137 1.1895 19 8 2.2135 -2.0020 2.3161 20 1 -0.3633 -0.0552 -1.0262 21 1 -0.3634 -0.8611 0.5609 22 1 -0.3634 0.9163 0.4652 23 1 0.4336 1.3960 -1.8378 24 1 1.0726 -1.5908 -1.8433 25 1 2.6915 -2.3639 -1.8229 26 1 0.1638 -3.9850 -2.3995 27 1 -0.4987 -4.6819 -0.9018 28 1 -0.8031 -2.9735 -1.2993 29 1 3.0922 -4.2435 -0.0561 30 1 1.7610 -5.4182 -0.1799 31 1 2.4938 -4.7447 -1.6557 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307370138.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:08 Heat of formation + Delta-G solvation = -83.487724 kcal Electronic energy + Delta-G solvation = -15128.731740 eV Core-core repulsion = 12603.246758 eV Total energy + Delta-G solvation = -2525.484982 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.23810 -38.87740 -37.69758 -34.70984 -33.56925 -30.61235 -28.45838 -28.16974 -25.77320 -24.17457 -22.26598 -20.96175 -19.70290 -17.97865 -17.62443 -17.10338 -16.46697 -15.72999 -15.52704 -15.06993 -14.80297 -14.55741 -14.19285 -13.55371 -13.36088 -13.11598 -13.01309 -12.89534 -12.73168 -12.53445 -12.39057 -11.91311 -11.85593 -11.58611 -11.56691 -11.47870 -10.49889 -9.15615 -8.38148 -5.50831 0.78545 1.57955 1.63212 1.82592 2.18699 2.59968 3.02681 3.10892 3.37199 3.47161 3.75872 3.79261 4.09222 4.24547 4.43270 4.63952 4.72477 4.73207 4.75572 4.80380 4.89480 4.93971 5.07849 5.16488 5.27219 5.70805 5.75499 6.26667 6.35524 6.85500 7.59935 7.94555 8.89240 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.046458 B = 0.009741 C = 0.008935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.552515 B = 2873.794919 C = 3133.079983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.144 3.856 2 N -0.592 5.592 3 C -0.380 4.380 4 H 0.053 0.947 5 C -0.056 4.056 6 N -0.926 5.926 7 Si 1.111 2.889 8 H -0.288 1.288 9 H -0.274 1.274 10 H -0.287 1.287 11 C 0.116 3.884 12 H 0.097 0.903 13 C -0.153 4.153 14 C 0.098 3.902 15 C -0.137 4.137 16 C -0.158 4.158 17 O -0.365 6.365 18 C 0.475 3.525 19 O -0.497 6.497 20 H 0.020 0.980 21 H 0.033 0.967 22 H 0.028 0.972 23 H 0.262 0.738 24 H 0.082 0.918 25 H 0.115 0.885 26 H 0.108 0.892 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.005 -12.328 -3.236 12.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 N -0.316 5.316 3 C -0.508 4.508 4 H 0.071 0.929 5 C -0.255 4.255 6 N -0.566 5.566 7 Si 0.936 3.064 8 H -0.215 1.215 9 H -0.199 1.199 10 H -0.213 1.213 11 C 0.006 3.994 12 H 0.115 0.885 13 C -0.192 4.192 14 C 0.062 3.938 15 C -0.194 4.194 16 C -0.215 4.215 17 O -0.283 6.283 18 C 0.314 3.686 19 O -0.381 6.381 20 H 0.038 0.962 21 H 0.052 0.948 22 H 0.047 0.953 23 H 0.072 0.928 24 H 0.101 0.899 25 H 0.133 0.867 26 H 0.126 0.874 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.691 -10.747 -2.651 11.090 hybrid contribution 0.282 -1.323 0.296 1.385 sum 0.973 -12.069 -2.354 12.335 Atomic orbital electron populations 1.20862 0.82902 0.98296 0.97985 1.43888 1.01510 1.00536 1.85693 1.20185 1.01236 0.87915 1.41480 0.92928 1.27062 0.98229 1.05108 0.95128 1.70879 1.36641 1.27921 1.21112 0.82905 0.76139 0.71968 0.75398 1.21457 1.19924 1.21277 1.21841 0.98605 0.87074 0.91902 0.88477 1.23479 1.03440 0.94741 0.97568 1.23374 0.98602 0.95209 0.76613 1.21904 0.94138 1.02374 1.00953 1.22291 0.97124 0.96856 1.05229 1.87289 1.48249 1.59079 1.33678 1.24728 0.74706 0.78965 0.90180 1.90562 1.52569 1.70128 1.24871 0.96180 0.94833 0.95348 0.92771 0.89948 0.86660 0.87388 0.90218 0.92860 0.93138 0.90250 0.87041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 7.02 8.12 127.77 1.04 8.05 16 2 N -0.59 -29.98 2.72 -702.76 -1.91 -31.89 16 3 C -0.38 -21.36 9.41 84.03 0.79 -20.57 16 4 H 0.05 3.01 7.96 -2.91 -0.02 2.98 16 5 C -0.06 -3.16 4.61 84.86 0.39 -2.77 16 6 N -0.93 -54.37 12.73 21.65 0.28 -54.09 16 7 Si 1.11 50.95 30.01 68.60 2.06 53.01 16 8 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 9 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 10 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 11 C 0.12 4.84 3.52 45.00 0.16 5.00 16 12 H 0.10 4.08 7.92 -2.39 -0.02 4.06 16 13 C -0.15 -4.74 5.80 31.55 0.18 -4.56 16 14 C 0.10 2.60 1.25 -10.33 -0.01 2.59 16 15 C -0.14 -2.84 8.82 71.98 0.64 -2.21 16 16 C -0.16 -3.10 8.70 71.98 0.63 -2.48 16 17 O -0.36 -13.40 9.96 -58.03 -0.58 -13.97 16 18 C 0.47 20.33 6.91 71.49 0.49 20.83 16 19 O -0.50 -24.52 18.00 21.51 0.39 -24.13 16 20 H 0.02 0.96 6.53 -2.39 -0.02 0.95 16 21 H 0.03 1.50 6.69 -2.39 -0.02 1.48 16 22 H 0.03 1.50 7.26 -2.39 -0.02 1.49 16 23 H 0.26 15.35 6.36 -92.70 -0.59 14.76 16 24 H 0.08 2.81 6.89 -2.39 -0.02 2.79 16 25 H 0.12 2.86 7.81 -2.39 -0.02 2.84 16 26 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 27 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.05 1.12 7.94 -2.39 -0.02 1.10 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -68.98 257.95 5.83 -63.16 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: 1.29 Total: 4.05 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 4.30 Total: 3.89 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -1.63 Total: -85.99 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -0.19 Total: -38.11 kcal Atomic # 14 Polarization: 50.95 SS G_CDS: 2.06 Total: 53.01 kcal Total: -68.98 5.83 -63.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307370138.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.332 kcal (2) G-P(sol) polarization free energy of solvation -68.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds