Wall clock time and date at job start Sun Mar 29 2020 22:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36942 * 119.99983 * 2 1 4 4 H 1.07996 * 120.00132 * 203.36041 * 3 2 1 5 5 C 1.38811 * 119.99969 * 23.35936 * 3 2 1 6 6 N 1.31618 * 119.99968 * 11.58375 * 5 3 2 7 7 Si 1.86797 * 120.00208 * 191.58357 * 5 3 2 8 8 H 1.48496 * 109.47250 * 59.99797 * 7 5 3 9 9 H 1.48502 * 109.47332 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.46880 * 299.99977 * 7 5 3 11 11 C 1.46500 * 119.99852 * 180.02562 * 2 1 3 12 12 H 1.09002 * 110.53948 * 177.13608 * 11 2 1 13 13 C 1.54534 * 110.61224 * 299.99906 * 11 2 1 14 14 C 1.54256 * 103.09660 * 135.00435 * 13 11 2 15 15 C 1.53002 * 110.07790 * 120.30141 * 14 13 11 16 16 C 1.53001 * 110.07561 * 241.78884 * 14 13 11 17 17 O 1.45595 * 106.42490 * 1.04521 * 14 13 11 18 18 C 1.34614 * 109.57981 * 338.80664 * 17 14 13 19 19 O 1.20827 * 126.38917 * 212.76553 * 18 17 14 20 20 H 1.08999 * 109.47078 * 274.14158 * 1 2 3 21 21 H 1.08998 * 109.47477 * 34.14555 * 1 2 3 22 22 H 1.09003 * 109.47057 * 154.14913 * 1 2 3 23 23 H 0.97003 * 120.00462 * 180.02562 * 6 5 3 24 24 H 1.08993 * 110.69135 * 16.59905 * 13 11 2 25 25 H 1.09001 * 110.83407 * 253.47642 * 13 11 2 26 26 H 1.08997 * 109.47408 * 180.79467 * 15 14 13 27 27 H 1.09006 * 109.47167 * 60.79636 * 15 14 13 28 28 H 1.09004 * 109.46938 * 300.79730 * 15 14 13 29 29 H 1.09004 * 109.47016 * 299.20646 * 16 14 13 30 30 H 1.08997 * 109.47133 * 59.19863 * 16 14 13 31 31 H 1.08997 * 109.47264 * 179.20479 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1633 1.2243 -0.3708 5 6 1.5410 2.3388 0.4766 6 7 0.4036 2.2588 1.1341 7 14 2.3360 4.0038 0.1850 8 1 2.4632 4.2427 -1.2751 9 1 1.4940 5.0672 0.7896 10 1 3.6833 4.0251 0.8093 11 6 2.1975 -1.2687 -0.0006 12 1 3.2716 -1.0902 -0.0515 13 6 1.8432 -2.1020 1.2517 14 6 1.6254 -3.5178 0.6793 15 6 2.6067 -4.5006 1.3214 16 6 0.1866 -3.9716 0.9337 17 8 1.8748 -3.4260 -0.7521 18 6 1.7433 -2.1473 -1.1519 19 8 1.3391 -1.7702 -2.2262 20 1 -0.3633 0.0742 1.0250 21 1 -0.3634 0.8505 -0.5768 22 1 -0.3633 -0.9249 -0.4481 23 1 -0.0221 3.0644 1.4669 24 1 0.9302 -1.7298 1.7163 25 1 2.6665 -2.0977 1.9659 26 1 2.4540 -5.4941 0.9000 27 1 2.4372 -4.5324 2.3977 28 1 3.6282 -4.1753 1.1239 29 1 -0.0013 -3.9993 2.0070 30 1 -0.5037 -3.2722 0.4621 31 1 0.0396 -4.9664 0.5132 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307370141.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:11 Heat of formation + Delta-G solvation = -59.492523 kcal Electronic energy + Delta-G solvation = -15048.616364 eV Core-core repulsion = 12524.171892 eV Total energy + Delta-G solvation = -2524.444472 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.56330 -37.09703 -35.49917 -33.24631 -31.62620 -28.87998 -27.37220 -26.04736 -24.23159 -22.43365 -20.65740 -19.25999 -17.13356 -16.16930 -15.81317 -15.45282 -14.73474 -14.13550 -13.57824 -13.47099 -13.35202 -12.59847 -12.58267 -12.19380 -11.93525 -11.63985 -11.53769 -11.00729 -10.95642 -10.74258 -10.53088 -10.51317 -10.18089 -10.08523 -9.92757 -9.49122 -8.58424 -6.87242 -5.81246 -3.29579 2.57596 3.36395 3.41813 3.44021 3.78582 4.41326 4.69159 4.84075 4.91055 5.05603 5.33034 5.44619 5.59127 5.61285 5.70508 5.79709 5.91878 5.94811 6.12984 6.21995 6.39507 6.56283 6.69829 7.26332 7.36005 7.61789 7.73461 8.14347 8.32815 9.11943 9.71762 10.19968 11.23749 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.047136 B = 0.009185 C = 0.008925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.881104 B = 3047.866719 C = 3136.341295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.572 5.572 3 C -0.263 4.263 4 H 0.070 0.930 5 C 0.008 3.992 6 N -0.905 5.905 7 Si 0.911 3.089 8 H -0.282 1.282 9 H -0.289 1.289 10 H -0.282 1.282 11 C 0.124 3.876 12 H 0.108 0.892 13 C -0.164 4.164 14 C 0.105 3.895 15 C -0.142 4.142 16 C -0.159 4.159 17 O -0.366 6.366 18 C 0.462 3.538 19 O -0.445 6.445 20 H 0.035 0.965 21 H 0.049 0.951 22 H -0.006 1.006 23 H 0.255 0.745 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.130 -10.759 3.128 11.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.293 5.293 3 C -0.392 4.392 4 H 0.088 0.912 5 C -0.191 4.191 6 N -0.549 5.549 7 Si 0.740 3.260 8 H -0.209 1.209 9 H -0.215 1.215 10 H -0.208 1.208 11 C 0.011 3.989 12 H 0.125 0.875 13 C -0.205 4.205 14 C 0.068 3.932 15 C -0.199 4.199 16 C -0.216 4.216 17 O -0.285 6.285 18 C 0.299 3.701 19 O -0.325 6.325 20 H 0.053 0.947 21 H 0.068 0.932 22 H 0.013 0.987 23 H 0.065 0.935 24 H 0.112 0.888 25 H 0.105 0.895 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.840 -10.575 2.549 11.033 hybrid contribution 0.326 0.964 -0.054 1.019 sum 2.166 -9.611 2.495 10.163 Atomic orbital electron populations 1.20820 0.81851 0.96076 0.99267 1.43682 1.01931 0.99160 1.84549 1.19186 0.98777 0.85249 1.36005 0.91189 1.25039 0.97659 0.98706 0.97716 1.70048 1.18560 1.27699 1.38590 0.86242 0.78453 0.83201 0.78073 1.20861 1.21500 1.20777 1.21688 0.98777 0.87834 0.90555 0.87466 1.23494 1.04549 0.92639 0.99782 1.22773 0.95975 0.97318 0.77129 1.21923 0.98971 0.98622 1.00378 1.22215 0.94788 1.02087 1.02557 1.87049 1.83203 1.31727 1.26501 1.24965 0.73002 0.82582 0.89508 1.90613 1.39141 1.76890 1.25903 0.94709 0.93199 0.98707 0.93466 0.88820 0.89550 0.91861 0.90541 0.91508 0.90530 0.91816 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.14 7.81 59.85 0.47 4.61 16 2 N -0.57 -14.53 2.86 -173.27 -0.49 -15.03 16 3 C -0.26 -7.23 9.61 -15.06 -0.14 -7.38 16 4 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 5 C 0.01 0.21 5.12 -17.43 -0.09 0.12 16 6 N -0.91 -25.90 10.66 55.49 0.59 -25.31 16 7 Si 0.91 21.75 29.57 -169.99 -5.03 16.72 16 8 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 C 0.12 2.59 3.53 -67.74 -0.24 2.35 16 12 H 0.11 2.14 7.92 -51.93 -0.41 1.73 16 13 C -0.16 -2.76 5.98 -25.27 -0.15 -2.91 16 14 C 0.11 1.55 1.28 -89.96 -0.11 1.43 16 15 C -0.14 -1.57 8.72 37.16 0.32 -1.24 16 16 C -0.16 -2.08 8.72 37.16 0.32 -1.76 16 17 O -0.37 -6.72 10.45 -39.84 -0.42 -7.14 16 18 C 0.46 9.91 7.10 36.54 0.26 10.17 16 19 O -0.44 -11.05 17.64 -18.28 -0.32 -11.37 16 20 H 0.03 0.90 7.30 -51.93 -0.38 0.52 16 21 H 0.05 1.38 7.26 -51.93 -0.38 1.00 16 22 H -0.01 -0.13 6.95 -51.93 -0.36 -0.49 16 23 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 24 H 0.09 1.70 6.77 -51.93 -0.35 1.35 16 25 H 0.09 1.27 7.72 -51.93 -0.40 0.87 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 259.27 15.07 3.91 3.91 Total: -1.00 -31.15 259.27 -5.49 -36.64 By element: Atomic # 1 Polarization: 0.55 SS G_CDS: -4.36 Total: -3.81 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 0.64 Total: 5.40 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.10 Total: -40.34 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.74 Total: -18.51 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.15 -5.49 -36.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307370141.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.856 kcal (2) G-P(sol) polarization free energy of solvation -31.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds