Wall clock time and date at job start Sun Mar 29 2020 22:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36942 * 119.99983 * 2 1 4 4 H 1.07996 * 120.00132 * 203.36041 * 3 2 1 5 5 C 1.38811 * 119.99969 * 23.35936 * 3 2 1 6 6 N 1.31618 * 119.99968 * 11.58375 * 5 3 2 7 7 Si 1.86797 * 120.00208 * 191.58357 * 5 3 2 8 8 H 1.48496 * 109.47250 * 59.99797 * 7 5 3 9 9 H 1.48502 * 109.47332 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.46880 * 299.99977 * 7 5 3 11 11 C 1.46500 * 119.99852 * 180.02562 * 2 1 3 12 12 H 1.09002 * 110.53948 * 177.13608 * 11 2 1 13 13 C 1.54534 * 110.61224 * 299.99906 * 11 2 1 14 14 C 1.54256 * 103.09660 * 135.00435 * 13 11 2 15 15 C 1.53002 * 110.07790 * 120.30141 * 14 13 11 16 16 C 1.53001 * 110.07561 * 241.78884 * 14 13 11 17 17 O 1.45595 * 106.42490 * 1.04521 * 14 13 11 18 18 C 1.34614 * 109.57981 * 338.80664 * 17 14 13 19 19 O 1.20827 * 126.38917 * 212.76553 * 18 17 14 20 20 H 1.08999 * 109.47078 * 274.14158 * 1 2 3 21 21 H 1.08998 * 109.47477 * 34.14555 * 1 2 3 22 22 H 1.09003 * 109.47057 * 154.14913 * 1 2 3 23 23 H 0.97003 * 120.00462 * 180.02562 * 6 5 3 24 24 H 1.08993 * 110.69135 * 16.59905 * 13 11 2 25 25 H 1.09001 * 110.83407 * 253.47642 * 13 11 2 26 26 H 1.08997 * 109.47408 * 180.79467 * 15 14 13 27 27 H 1.09006 * 109.47167 * 60.79636 * 15 14 13 28 28 H 1.09004 * 109.46938 * 300.79730 * 15 14 13 29 29 H 1.09004 * 109.47016 * 299.20646 * 16 14 13 30 30 H 1.08997 * 109.47133 * 59.19863 * 16 14 13 31 31 H 1.08997 * 109.47264 * 179.20479 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1633 1.2243 -0.3708 5 6 1.5410 2.3388 0.4766 6 7 0.4036 2.2588 1.1341 7 14 2.3360 4.0038 0.1850 8 1 2.4632 4.2427 -1.2751 9 1 1.4940 5.0672 0.7896 10 1 3.6833 4.0251 0.8093 11 6 2.1975 -1.2687 -0.0006 12 1 3.2716 -1.0902 -0.0515 13 6 1.8432 -2.1020 1.2517 14 6 1.6254 -3.5178 0.6793 15 6 2.6067 -4.5006 1.3214 16 6 0.1866 -3.9716 0.9337 17 8 1.8748 -3.4260 -0.7521 18 6 1.7433 -2.1473 -1.1519 19 8 1.3391 -1.7702 -2.2262 20 1 -0.3633 0.0742 1.0250 21 1 -0.3634 0.8505 -0.5768 22 1 -0.3633 -0.9249 -0.4481 23 1 -0.0221 3.0644 1.4669 24 1 0.9302 -1.7298 1.7163 25 1 2.6665 -2.0977 1.9659 26 1 2.4540 -5.4941 0.9000 27 1 2.4372 -4.5324 2.3977 28 1 3.6282 -4.1753 1.1239 29 1 -0.0013 -3.9993 2.0070 30 1 -0.5037 -3.2722 0.4621 31 1 0.0396 -4.9664 0.5132 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307370141.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:11 Heat of formation + Delta-G solvation = -78.837554 kcal Electronic energy + Delta-G solvation = -15049.455227 eV Core-core repulsion = 12524.171892 eV Total energy + Delta-G solvation = -2525.283335 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.09704 -38.76961 -37.40601 -34.61816 -33.48260 -30.60303 -28.39511 -28.03689 -25.80926 -24.25243 -22.16332 -20.80423 -19.09118 -17.88847 -17.46515 -16.99729 -16.51501 -15.76722 -15.15722 -14.96680 -14.85008 -14.27234 -14.13694 -13.51468 -13.14426 -13.01823 -12.90322 -12.84144 -12.66396 -12.48637 -12.27209 -12.17521 -12.06847 -11.68766 -11.43701 -11.23053 -10.63538 -8.89216 -7.90183 -5.41225 0.91512 1.46140 1.50081 1.56035 2.30189 2.47978 3.12663 3.27293 3.41356 3.69938 3.83140 3.87924 4.18037 4.33056 4.60736 4.70582 4.79366 4.85681 4.92433 5.00604 5.12201 5.16374 5.23315 5.35664 5.53340 5.59471 5.84401 6.19561 6.51719 7.04009 7.69579 8.14616 9.13642 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.047136 B = 0.009185 C = 0.008925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.881104 B = 3047.866719 C = 3136.341295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.186 3.814 2 N -0.590 5.590 3 C -0.278 4.278 4 H 0.073 0.927 5 C -0.043 4.043 6 N -0.932 5.932 7 Si 0.974 3.026 8 H -0.285 1.285 9 H -0.290 1.290 10 H -0.268 1.268 11 C 0.113 3.887 12 H 0.116 0.884 13 C -0.151 4.151 14 C 0.101 3.899 15 C -0.137 4.137 16 C -0.159 4.159 17 O -0.366 6.366 18 C 0.467 3.533 19 O -0.489 6.489 20 H 0.024 0.976 21 H 0.016 0.984 22 H 0.006 0.994 23 H 0.252 0.748 24 H 0.079 0.921 25 H 0.113 0.887 26 H 0.075 0.925 27 H 0.105 0.895 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.037 0.963 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.259 -12.074 4.307 13.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.313 5.313 3 C -0.407 4.407 4 H 0.091 0.909 5 C -0.239 4.239 6 N -0.577 5.577 7 Si 0.801 3.199 8 H -0.211 1.211 9 H -0.216 1.216 10 H -0.194 1.194 11 C 0.003 3.997 12 H 0.134 0.866 13 C -0.191 4.191 14 C 0.064 3.936 15 C -0.194 4.194 16 C -0.216 4.216 17 O -0.284 6.284 18 C 0.307 3.693 19 O -0.374 6.374 20 H 0.042 0.958 21 H 0.035 0.965 22 H 0.024 0.976 23 H 0.061 0.939 24 H 0.098 0.902 25 H 0.132 0.868 26 H 0.094 0.906 27 H 0.123 0.877 28 H 0.088 0.912 29 H 0.123 0.877 30 H 0.056 0.944 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.998 -11.944 3.751 12.873 hybrid contribution -0.009 1.267 -0.418 1.335 sum 2.988 -10.677 3.333 11.577 Atomic orbital electron populations 1.20465 0.82458 0.95045 0.97941 1.43797 1.01888 1.00370 1.85211 1.19517 0.99011 0.86501 1.35676 0.90904 1.25800 0.98353 1.01901 0.97842 1.70184 1.19777 1.28171 1.39575 0.85254 0.78048 0.79003 0.77574 1.21110 1.21633 1.19357 1.21979 0.98828 0.86662 0.92246 0.86604 1.23380 1.04833 0.92916 0.97970 1.23229 0.98350 0.97043 0.74931 1.21973 0.97802 0.97858 1.01733 1.22268 0.92914 1.02133 1.04322 1.87056 1.82554 1.29714 1.29058 1.24952 0.71981 0.83659 0.88715 1.90586 1.41353 1.77940 1.27475 0.95795 0.96542 0.97565 0.93862 0.90233 0.86842 0.90564 0.87688 0.91184 0.87746 0.94426 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.61 7.81 127.77 1.00 10.61 16 2 N -0.59 -30.23 2.86 -702.10 -2.00 -32.24 16 3 C -0.28 -15.33 9.61 84.03 0.81 -14.52 16 4 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 5 C -0.04 -2.39 5.12 84.86 0.43 -1.96 16 6 N -0.93 -54.13 10.66 21.65 0.23 -53.90 16 7 Si 0.97 44.81 29.57 68.60 2.03 46.84 16 8 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 9 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 10 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 11 C 0.11 4.66 3.53 45.11 0.16 4.82 16 12 H 0.12 4.51 7.92 -2.39 -0.02 4.49 16 13 C -0.15 -4.75 5.98 31.54 0.19 -4.56 16 14 C 0.10 2.66 1.28 -10.37 -0.01 2.65 16 15 C -0.14 -2.41 8.72 71.98 0.63 -1.78 16 16 C -0.16 -3.73 8.72 71.98 0.63 -3.10 16 17 O -0.37 -12.82 10.45 -55.62 -0.58 -13.40 16 18 C 0.47 19.91 7.10 71.58 0.51 20.42 16 19 O -0.49 -24.71 17.64 21.51 0.38 -24.33 16 20 H 0.02 1.27 7.30 -2.39 -0.02 1.26 16 21 H 0.02 0.92 7.26 -2.39 -0.02 0.90 16 22 H 0.01 0.29 6.95 -2.39 -0.02 0.27 16 23 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 24 H 0.08 2.77 6.77 -2.39 -0.02 2.76 16 25 H 0.11 2.95 7.72 -2.39 -0.02 2.93 16 26 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.10 1.87 8.14 -2.39 -0.02 1.86 16 30 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -67.83 259.27 5.50 -62.34 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: 1.11 Total: 2.12 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 4.34 Total: 12.57 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -1.77 Total: -86.13 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -0.20 Total: -37.73 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -67.83 5.50 -62.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307370141.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.500 kcal (2) G-P(sol) polarization free energy of solvation -67.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds