Wall clock time and date at job start Sun Mar 29 2020 21:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36938 * 119.99420 * 2 1 4 4 H 1.08002 * 120.00137 * 200.82486 * 3 2 1 5 5 C 1.38811 * 120.00302 * 20.81972 * 3 2 1 6 6 N 1.31624 * 119.99667 * 14.67989 * 5 3 2 7 7 Si 1.86802 * 120.00297 * 194.66786 * 5 3 2 8 8 H 1.48502 * 109.46840 * 84.99671 * 7 5 3 9 9 H 1.48504 * 109.47283 * 204.99577 * 7 5 3 10 10 H 1.48496 * 109.47210 * 325.00078 * 7 5 3 11 11 C 1.46498 * 120.00395 * 180.02562 * 2 1 3 12 12 N 1.46492 * 109.47013 * 269.99820 * 11 2 1 13 13 C 1.38644 * 125.98473 * 105.00435 * 12 11 2 14 14 C 1.32893 * 107.91978 * 180.02562 * 13 12 11 15 15 N 1.38649 * 107.91134 * 0.23860 * 14 13 12 16 16 H 0.97002 * 125.98113 * 179.72976 * 15 14 13 17 17 C 1.34756 * 108.03092 * 359.60099 * 15 14 13 18 18 S 1.71203 * 125.94519 * 180.16526 * 17 15 14 19 19 H 1.09002 * 109.46967 * 275.15898 * 1 2 3 20 20 H 1.08996 * 109.47417 * 35.16090 * 1 2 3 21 21 H 1.09006 * 109.46878 * 155.16505 * 1 2 3 22 22 H 0.97001 * 119.99698 * 179.97438 * 6 5 3 23 23 H 1.09005 * 109.46777 * 149.99422 * 11 2 1 24 24 H 1.08997 * 109.46885 * 29.99865 * 11 2 1 25 25 H 1.08003 * 126.04274 * 0.02562 * 13 12 11 26 26 H 1.08002 * 126.04436 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1767 1.2167 -0.3325 5 6 1.5235 2.3489 0.4273 6 7 0.3918 2.2794 1.0958 7 14 2.2871 4.0123 0.0538 8 1 1.8706 4.4550 -1.3012 9 1 1.8306 5.0038 1.0606 10 1 3.7669 3.9003 0.1047 11 6 2.1976 -1.2687 -0.0006 12 7 2.4418 -1.6921 1.3804 13 6 1.7761 -2.7065 2.0512 14 6 2.2808 -2.7852 3.2781 15 7 3.2667 -1.8176 3.3965 16 1 3.8022 -1.6433 4.1863 17 6 3.3525 -1.1636 2.2214 18 16 4.4270 0.1198 1.8617 19 1 -0.3633 0.0924 1.0235 20 1 -0.3634 0.8401 -0.5918 21 1 -0.3633 -0.9327 -0.4317 22 1 -0.0456 3.0920 1.3947 23 1 3.1500 -1.1380 -0.5145 24 1 1.6086 -2.0281 -0.5147 25 1 0.9869 -3.3238 1.6480 26 1 1.9739 -3.4774 4.0482 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307387437.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:57 Heat of formation + Delta-G solvation = 69.624193 kcal Electronic energy + Delta-G solvation = -12513.472208 eV Core-core repulsion = 10333.839184 eV Total energy + Delta-G solvation = -2179.633023 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.08485 -37.78865 -35.00195 -32.80120 -31.14869 -28.11256 -27.73142 -24.26693 -22.83795 -22.43722 -20.22300 -18.80394 -17.19432 -16.79925 -16.61651 -16.06316 -15.55294 -15.31121 -14.92762 -14.34170 -13.92573 -13.20336 -12.91084 -12.65442 -12.49721 -12.18137 -11.98232 -11.93952 -11.38525 -10.74692 -10.52610 -9.17685 -8.43561 -8.14029 -7.84098 -5.27798 0.63935 1.14109 1.32734 1.40885 1.44187 1.55590 1.97788 2.46508 2.54686 3.41062 3.55935 3.93526 4.27257 4.32610 4.58608 4.65883 4.76740 4.86301 5.27966 5.63796 5.74252 5.87287 6.07876 6.25204 6.36838 7.15380 7.75435 8.10586 9.17986 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.035257 B = 0.013069 C = 0.010950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.983099 B = 2141.892003 C = 2556.403389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.168 3.832 2 N -0.582 5.582 3 C -0.215 4.215 4 H 0.070 0.930 5 C -0.041 4.041 6 N -0.937 5.937 7 Si 0.950 3.050 8 H -0.275 1.275 9 H -0.298 1.298 10 H -0.290 1.290 11 C 0.340 3.660 12 N -0.457 5.457 13 C -0.018 4.018 14 C -0.008 4.008 15 N -0.561 5.561 16 H 0.445 0.555 17 C 0.456 3.544 18 S -0.761 6.761 19 H 0.005 0.995 20 H 0.025 0.975 21 H 0.055 0.945 22 H 0.243 0.757 23 H 0.073 0.927 24 H 0.136 0.864 25 H 0.231 0.769 26 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.256 -16.193 2.867 16.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.301 5.301 3 C -0.345 4.345 4 H 0.088 0.912 5 C -0.236 4.236 6 N -0.584 5.584 7 Si 0.781 3.219 8 H -0.202 1.202 9 H -0.225 1.225 10 H -0.216 1.216 11 C 0.133 3.867 12 N -0.151 5.151 13 C -0.147 4.147 14 C -0.137 4.137 15 N -0.174 5.174 16 H 0.288 0.712 17 C 0.092 3.908 18 S -0.632 6.632 19 H 0.023 0.977 20 H 0.044 0.956 21 H 0.074 0.926 22 H 0.053 0.947 23 H 0.091 0.909 24 H 0.153 0.847 25 H 0.247 0.753 26 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -1.800 -15.180 2.403 15.474 hybrid contribution 0.217 0.997 0.799 1.295 sum -1.583 -14.183 3.202 14.626 Atomic orbital electron populations 1.20778 0.81045 0.97618 0.98201 1.45029 1.03226 1.01738 1.80120 1.19405 0.96375 0.84809 1.33946 0.91196 1.25415 0.98294 1.00926 0.98936 1.70191 1.20162 1.26688 1.41400 0.85513 0.77805 0.81309 0.77291 1.20178 1.22502 1.21614 1.22227 0.97890 0.88075 0.78509 1.48757 1.25179 1.26027 1.15178 1.23384 1.02671 0.95606 0.93080 1.23221 0.93287 0.97121 1.00087 1.43469 1.32971 1.28646 1.12301 0.71190 1.22153 0.92027 0.92147 0.84490 1.93307 1.47200 1.32989 1.89689 0.97655 0.95648 0.92639 0.94743 0.90873 0.84660 0.75287 0.73906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 7.46 9.02 127.77 1.15 8.61 15 2 N -0.58 -27.70 3.17 -738.77 -2.34 -30.04 15 3 C -0.21 -12.25 7.93 84.03 0.67 -11.59 15 4 H 0.07 4.30 7.21 -2.91 -0.02 4.28 15 5 C -0.04 -2.46 5.07 84.86 0.43 -2.03 15 6 N -0.94 -56.88 10.68 21.65 0.23 -56.65 15 7 Si 0.95 50.54 29.58 68.60 2.03 52.57 15 8 H -0.28 -13.79 7.11 99.48 0.71 -13.08 15 9 H -0.30 -15.90 7.11 99.48 0.71 -15.19 15 10 H -0.29 -16.09 7.11 99.48 0.71 -15.38 15 11 C 0.34 12.46 6.33 170.96 1.08 13.54 15 12 N -0.46 -15.67 3.02 -538.23 -1.62 -17.29 15 13 C -0.02 -0.37 11.47 82.44 0.95 0.57 15 14 C -0.01 -0.14 11.94 82.44 0.98 0.85 15 15 N -0.56 -15.70 6.15 -196.75 -1.21 -16.91 15 16 H 0.44 10.56 8.96 -92.71 -0.83 9.73 15 17 C 0.46 18.49 8.06 179.07 1.44 19.93 15 18 S -0.76 -41.01 28.26 -56.49 -1.60 -42.60 15 19 H 0.00 0.25 7.39 -2.39 -0.02 0.23 15 20 H 0.02 1.25 7.24 -2.39 -0.02 1.24 15 21 H 0.06 1.85 7.83 -2.38 -0.02 1.83 15 22 H 0.24 14.61 8.31 -92.71 -0.77 13.84 15 23 H 0.07 2.97 8.00 -2.38 -0.02 2.95 15 24 H 0.14 3.45 7.82 -2.39 -0.02 3.43 15 25 H 0.23 2.53 8.06 -2.91 -0.02 2.50 15 26 H 0.24 1.38 8.06 -2.91 -0.02 1.35 15 Total: -1.00 -85.86 240.87 2.56 -83.30 By element: Atomic # 1 Polarization: -2.63 SS G_CDS: 0.36 Total: -2.27 kcal Atomic # 6 Polarization: 23.19 SS G_CDS: 6.71 Total: 29.90 kcal Atomic # 7 Polarization: -115.96 SS G_CDS: -4.94 Total: -120.90 kcal Atomic # 14 Polarization: 50.54 SS G_CDS: 2.03 Total: 52.57 kcal Atomic # 16 Polarization: -41.01 SS G_CDS: -1.60 Total: -42.60 kcal Total: -85.86 2.56 -83.30 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307387437.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.925 kcal (2) G-P(sol) polarization free energy of solvation -85.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds