Wall clock time and date at job start Sun Mar 29 2020 21:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86798 * 120.00043 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99997 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99990 * 3 2 1 7 7 C 1.38751 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99894 * 179.97438 * 7 2 1 9 9 O 1.34923 * 119.99775 * 0.02562 * 7 2 1 10 10 C 1.34313 * 116.99743 * 179.97438 * 9 7 2 11 11 O 1.21209 * 120.00201 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99940 * 180.02562 * 10 9 7 13 13 H 1.09006 * 109.66973 * 299.99751 * 12 10 9 14 14 C 1.53347 * 109.67730 * 179.49975 * 12 10 9 15 15 C 1.52917 * 108.67065 * 172.75418 * 14 12 10 16 16 N 1.45760 * 110.50726 * 50.72761 * 15 14 12 17 17 C 1.33353 * 124.10367 * 340.90929 * 16 15 14 18 18 O 1.21280 * 118.24803 * 182.22839 * 17 16 15 19 19 C 1.50176 * 123.50821 * 2.24842 * 17 16 15 20 20 H 0.96998 * 120.00069 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.59965 * 292.49011 * 14 12 10 22 22 H 1.09000 * 109.60162 * 52.97410 * 14 12 10 23 23 H 1.08999 * 109.28392 * 290.41380 * 15 14 12 24 24 H 1.08995 * 109.13763 * 170.94048 * 15 14 12 25 25 H 0.96993 * 117.95304 * 160.93665 * 16 15 14 26 26 H 1.09000 * 109.40055 * 222.28981 * 19 17 16 27 27 H 1.08996 * 109.40441 * 102.54335 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 1.2834 2.7465 -0.0006 5 1 3.1022 1.6964 -1.2125 6 1 3.1022 1.6964 1.2125 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0001 9 8 1.3336 -2.3701 0.0005 10 6 2.0651 -3.4965 0.0005 11 8 3.2755 -3.4331 0.0001 12 6 1.3810 -4.8392 0.0000 13 1 0.7568 -4.9334 0.8887 14 6 2.4331 -5.9548 -0.0125 15 6 1.7248 -7.2977 0.1698 16 7 0.6225 -7.4261 -0.7752 17 6 0.0543 -6.3973 -1.4054 18 8 -0.8846 -6.6216 -2.1397 19 6 0.5149 -4.9759 -1.2548 20 1 -0.4850 -0.8400 0.0004 21 1 2.9626 -5.9473 -0.9652 22 1 3.1399 -5.8000 0.8027 23 1 1.3376 -7.3653 1.1864 24 1 2.4388 -8.1039 0.0019 25 1 0.2805 -8.3154 -0.9567 26 1 -0.3524 -4.3214 -1.1691 27 1 1.0980 -4.6896 -2.1300 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307411714.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:43 Heat of formation + Delta-G solvation = -159.717019 kcal Electronic energy + Delta-G solvation = -14190.843341 eV Core-core repulsion = 11526.219714 eV Total energy + Delta-G solvation = -2664.623626 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.79258 -40.77716 -38.00786 -37.03605 -34.49614 -34.08390 -30.75548 -27.65827 -26.08246 -24.36488 -22.01898 -20.28918 -20.14686 -18.72403 -18.22987 -17.48333 -17.07338 -16.53460 -16.35620 -15.58457 -15.31923 -14.99284 -14.88733 -14.48117 -13.18765 -13.14896 -12.93200 -12.78821 -12.33774 -12.18294 -12.15764 -11.93075 -11.89974 -11.46341 -10.81177 -10.68401 -10.13079 -9.03355 -6.44022 1.28708 1.45628 1.48624 1.67980 1.80269 2.16043 2.23119 2.59758 2.97489 3.45226 3.55348 3.64054 3.82477 4.08807 4.34178 4.47627 4.57766 4.65600 4.84869 4.94901 5.13962 5.30077 5.80055 6.14486 6.17829 6.36552 6.86671 7.09541 7.58485 8.42864 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.052612 B = 0.007728 C = 0.006961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.067037 B = 3622.207357 C = 4021.602579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.026 4.026 3 Si 1.143 2.857 4 H -0.265 1.265 5 H -0.265 1.265 6 H -0.263 1.263 7 C -0.494 4.494 8 H 0.073 0.927 9 O -0.261 6.261 10 C 0.404 3.596 11 O -0.571 6.571 12 C -0.064 4.064 13 H 0.122 0.878 14 C -0.115 4.115 15 C 0.117 3.883 16 N -0.704 5.704 17 C 0.533 3.467 18 O -0.599 6.599 19 C -0.122 4.122 20 H 0.267 0.733 21 H 0.071 0.929 22 H 0.099 0.901 23 H 0.095 0.905 24 H 0.121 0.879 25 H 0.412 0.588 26 H 0.097 0.903 27 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.644 -13.022 1.985 13.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.225 4.225 3 Si 0.959 3.041 4 H -0.190 1.190 5 H -0.190 1.190 6 H -0.187 1.187 7 C -0.569 4.569 8 H 0.091 0.909 9 O -0.170 6.170 10 C 0.252 3.748 11 O -0.468 6.468 12 C -0.084 4.084 13 H 0.140 0.860 14 C -0.153 4.153 15 C -0.006 4.006 16 N -0.355 5.355 17 C 0.320 3.680 18 O -0.481 6.481 19 C -0.162 4.162 20 H 0.076 0.924 21 H 0.090 0.910 22 H 0.117 0.883 23 H 0.113 0.887 24 H 0.139 0.861 25 H 0.249 0.751 26 H 0.115 0.885 27 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.360 -11.252 1.680 11.862 hybrid contribution 0.056 -1.805 -0.143 1.812 sum 3.415 -13.057 1.537 13.584 Atomic orbital electron populations 1.70682 1.07419 1.30649 1.44617 1.28351 0.96822 1.04512 0.92863 0.82611 0.73855 0.69009 0.78650 1.18967 1.18995 1.18736 1.22264 0.93390 0.82670 1.58621 0.90884 1.83651 1.41246 1.14849 1.77267 1.24129 0.86629 0.87590 0.76470 1.90532 1.16843 1.88381 1.51032 1.21053 0.98299 0.88243 1.00763 0.86000 1.21797 0.96692 0.91856 1.04973 1.21667 0.88309 0.97285 0.93350 1.45389 1.36101 1.09596 1.44421 1.19799 0.81590 0.87679 0.78971 1.90736 1.30557 1.85777 1.41068 1.21517 1.01512 0.94393 0.98790 0.92437 0.91015 0.88277 0.88706 0.86054 0.75058 0.88498 0.88586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.30 13.69 21.62 0.30 -54.00 15 2 C -0.03 -1.50 5.49 84.87 0.47 -1.04 15 3 Si 1.14 48.55 29.92 68.60 2.05 50.60 15 4 H -0.27 -10.83 7.11 99.48 0.71 -10.12 15 5 H -0.27 -10.49 7.11 99.48 0.71 -9.79 15 6 H -0.26 -10.29 7.11 99.48 0.71 -9.59 15 7 C -0.49 -29.64 9.64 67.94 0.66 -28.99 15 8 H 0.07 4.48 6.86 -2.91 -0.02 4.46 15 9 O -0.26 -14.73 9.09 14.81 0.13 -14.60 15 10 C 0.40 19.05 7.18 71.23 0.51 19.56 15 11 O -0.57 -29.50 15.14 20.78 0.31 -29.19 15 12 C -0.06 -2.07 2.70 -11.40 -0.03 -2.10 15 13 H 0.12 3.48 8.13 -2.38 -0.02 3.46 15 14 C -0.12 -2.72 4.71 30.68 0.14 -2.57 15 15 C 0.12 1.66 7.17 86.49 0.62 2.28 15 16 N -0.70 -13.74 5.45 -467.32 -2.55 -16.29 15 17 C 0.53 15.72 7.71 87.71 0.68 16.39 15 18 O -0.60 -22.45 17.78 -3.03 -0.05 -22.50 15 19 C -0.12 -4.00 5.30 29.71 0.16 -3.84 15 20 H 0.27 16.46 7.97 -92.71 -0.74 15.72 15 21 H 0.07 1.82 8.12 -2.39 -0.02 1.80 15 22 H 0.10 2.33 7.90 -2.39 -0.02 2.31 15 23 H 0.09 1.01 8.14 -2.39 -0.02 0.99 15 24 H 0.12 0.93 8.14 -2.39 -0.02 0.91 15 25 H 0.41 6.38 8.80 -92.71 -0.82 5.57 15 26 H 0.10 3.50 8.14 -2.39 -0.02 3.48 15 27 H 0.10 3.28 8.09 -2.39 -0.02 3.26 15 Total: -1.00 -77.64 242.59 3.81 -73.83 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.41 Total: 12.45 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 3.20 Total: -0.30 kcal Atomic # 7 Polarization: -68.05 SS G_CDS: -2.25 Total: -70.30 kcal Atomic # 8 Polarization: -66.68 SS G_CDS: 0.40 Total: -66.28 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 2.05 Total: 50.60 kcal Total: -77.64 3.81 -73.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307411714.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.887 kcal (2) G-P(sol) polarization free energy of solvation -77.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds