Wall clock time and date at job start Sun Mar 29 2020 22:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 O 1.42898 * 112.94500 * 48.39961 * 4 2 1 6 6 C 1.53952 * 113.73950 * 276.67349 * 4 2 1 7 7 N 1.47580 * 86.11234 * 222.04518 * 6 4 2 8 8 C 1.34773 * 134.48946 * 204.63511 * 7 6 4 9 9 O 1.21687 * 120.00265 * 180.02562 * 8 7 6 10 10 C 1.46378 * 119.99893 * 0.02562 * 8 7 6 11 11 H 1.08000 * 120.00445 * 359.97438 * 10 8 7 12 12 C 1.40055 * 120.00070 * 179.97438 * 10 8 7 13 13 N 1.30671 * 119.99584 * 359.97438 * 12 10 8 14 14 Si 1.86801 * 120.00214 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46831 * 90.00038 * 14 12 10 16 16 H 1.48497 * 109.46949 * 209.99817 * 14 12 10 17 17 H 1.48496 * 109.46878 * 329.99548 * 14 12 10 18 18 C 1.47582 * 91.01717 * 24.63912 * 7 6 4 19 19 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 21 21 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 22 22 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 23 23 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 24 24 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 25 25 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 26 26 H 0.96695 * 114.00520 * 180.02562 * 5 4 2 27 27 H 1.09002 * 113.76573 * 336.34714 * 6 4 2 28 28 H 1.09003 * 113.76623 * 107.74368 * 6 4 2 29 29 H 0.97005 * 119.99594 * 180.02562 * 13 12 10 30 30 H 1.08999 * 113.76680 * 221.05602 * 18 7 6 31 31 H 1.08998 * 113.86821 * 89.67404 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.4020 -0.2771 -2.4484 6 6 2.0922 -2.2528 -1.1029 7 7 3.3941 -2.1739 -1.7934 8 6 4.1244 -3.0318 -2.5331 9 8 5.1965 -2.6813 -2.9897 10 6 3.6279 -4.3851 -2.7872 11 1 2.6766 -4.6964 -2.3816 12 6 4.3866 -5.2765 -3.5563 13 7 5.5374 -4.8997 -4.0474 14 14 3.7533 -7.0038 -3.8799 15 1 2.9429 -7.0088 -5.1243 16 1 4.9026 -7.9315 -4.0340 17 1 2.9113 -7.4442 -2.7388 18 6 3.5752 -0.7784 -1.3486 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 1.8934 -0.5139 0.8900 23 1 3.1299 1.4426 -0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6767 1.9564 0.8899 26 1 1.7128 -0.7235 -3.2478 27 1 2.1628 -2.5932 -0.0697 28 1 1.3236 -2.7750 -1.6726 29 1 6.0627 -5.5170 -4.5804 30 1 3.9906 -0.1236 -2.1146 31 1 4.0814 -0.6838 -0.3880 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307414523.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:28 Heat of formation + Delta-G solvation = -62.386231 kcal Electronic energy + Delta-G solvation = -14612.351453 eV Core-core repulsion = 12087.781501 eV Total energy + Delta-G solvation = -2524.569952 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.86256 -36.45291 -34.09956 -34.02852 -32.50193 -28.02924 -27.26126 -25.91213 -24.97202 -22.25494 -19.61126 -18.99924 -16.84404 -16.07654 -15.41568 -15.14698 -14.46479 -14.15009 -14.11749 -13.26965 -13.01869 -12.64918 -12.40244 -12.12114 -11.91100 -11.49736 -11.38336 -11.08845 -10.97861 -10.86932 -10.72092 -10.56911 -10.21690 -10.08412 -9.33600 -8.91562 -7.70503 -7.35573 -6.25745 -4.71425 3.10390 3.17045 3.20751 3.97213 4.25433 4.47208 4.48477 4.70752 4.98358 5.20230 5.49378 5.53234 5.61922 5.78820 5.87233 5.98669 6.02588 6.05611 6.10572 6.18717 6.20827 6.40243 6.48308 6.65605 6.70232 7.37603 7.94519 8.03937 8.39326 8.95446 9.49232 10.50334 10.69494 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.053011 B = 0.007848 C = 0.007232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.065715 B = 3566.813637 C = 3870.557681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.072 4.072 3 C -0.145 4.145 4 C 0.106 3.894 5 O -0.540 6.540 6 C 0.084 3.916 7 N -0.664 5.664 8 C 0.576 3.424 9 O -0.574 6.574 10 C -0.537 4.537 11 H 0.068 0.932 12 C 0.086 3.914 13 N -0.768 5.768 14 Si 0.911 3.089 15 H -0.271 1.271 16 H -0.278 1.278 17 H -0.264 1.264 18 C 0.077 3.923 19 H 0.053 0.947 20 H 0.048 0.952 21 H 0.062 0.938 22 H 0.081 0.919 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.385 0.615 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.270 0.730 30 H 0.069 0.931 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.033 6.365 6.803 12.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.091 4.091 3 C -0.202 4.202 4 C 0.063 3.937 5 O -0.347 6.347 6 C -0.041 4.041 7 N -0.406 5.406 8 C 0.384 3.616 9 O -0.456 6.456 10 C -0.574 4.574 11 H 0.086 0.914 12 C -0.134 4.134 13 N -0.397 5.397 14 Si 0.735 3.265 15 H -0.196 1.196 16 H -0.203 1.203 17 H -0.189 1.189 18 C -0.047 4.047 19 H 0.073 0.927 20 H 0.067 0.933 21 H 0.082 0.918 22 H 0.100 0.900 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.234 0.766 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.429 6.735 6.701 12.700 hybrid contribution 0.095 -1.366 -0.462 1.445 sum -8.334 5.368 6.239 11.713 Atomic orbital electron populations 1.21696 0.94622 1.01829 1.01561 1.21001 0.96593 0.96387 0.95136 1.21795 1.01081 0.95640 1.01690 1.22823 0.91680 0.93101 0.86063 1.86296 1.65664 1.66302 1.16401 1.23545 0.88012 0.95095 0.97430 1.50324 1.22170 1.13123 1.55010 1.18092 0.82767 0.84065 0.76699 1.90622 1.22726 1.77601 1.54651 1.20821 1.06563 0.95356 1.34638 0.91387 1.25743 0.94021 0.99798 0.93807 1.70020 1.09856 1.35215 1.24577 0.86322 0.79017 0.81770 0.79400 1.19603 1.20331 1.18864 1.23521 0.95313 0.86628 0.99239 0.92747 0.93279 0.91846 0.90040 0.92594 0.92121 0.92971 0.76641 0.91234 0.90788 0.91940 0.91266 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.95 37.16 0.33 -1.28 16 2 C -0.07 -0.91 2.58 -90.62 -0.23 -1.15 16 3 C -0.14 -1.69 8.98 37.16 0.33 -1.35 16 4 C 0.11 1.68 0.99 -89.69 -0.09 1.59 16 5 O -0.54 -8.77 12.62 -35.23 -0.44 -9.22 16 6 C 0.08 1.52 7.80 -2.97 -0.02 1.50 16 7 N -0.66 -15.40 3.49 -179.93 -0.63 -16.03 16 8 C 0.58 16.84 7.98 -12.99 -0.10 16.74 16 9 O -0.57 -19.15 15.75 5.20 0.08 -19.07 16 10 C -0.54 -15.39 9.33 -35.63 -0.33 -15.72 16 11 H 0.07 1.81 7.67 -52.49 -0.40 1.40 16 12 C 0.09 2.42 5.50 -17.36 -0.10 2.33 16 13 N -0.77 -23.20 11.83 55.55 0.66 -22.54 16 14 Si 0.91 20.20 29.56 -169.99 -5.02 15.17 16 15 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 16 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 17 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 18 C 0.08 1.47 7.25 -2.98 -0.02 1.45 16 19 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 20 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 21 H 0.06 0.79 7.61 -51.93 -0.40 0.40 16 22 H 0.08 0.96 7.94 -51.93 -0.41 0.55 16 23 H 0.05 0.66 7.43 -51.93 -0.39 0.27 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.38 6.23 8.90 45.56 0.41 6.63 16 27 H 0.07 1.15 7.96 -51.93 -0.41 0.73 16 28 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.27 7.35 8.29 -40.82 -0.34 7.02 16 30 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.07 1.19 8.06 -51.93 -0.42 0.77 16 LS Contribution 266.63 15.07 4.02 4.02 Total: -1.00 -34.35 266.63 -5.27 -39.62 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -3.69 Total: 3.96 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -0.23 Total: 4.10 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.03 Total: -38.57 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.36 Total: -28.29 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -34.35 -5.27 -39.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307414523.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.771 kcal (2) G-P(sol) polarization free energy of solvation -34.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds