Wall clock time and date at job start Sun Mar 29 2020 22:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 O 1.42898 * 112.94500 * 48.39961 * 4 2 1 6 6 C 1.53952 * 113.73950 * 276.67349 * 4 2 1 7 7 N 1.47580 * 86.11234 * 222.04518 * 6 4 2 8 8 C 1.34773 * 134.48946 * 204.63511 * 7 6 4 9 9 O 1.21687 * 120.00265 * 180.02562 * 8 7 6 10 10 C 1.46378 * 119.99893 * 0.02562 * 8 7 6 11 11 H 1.08000 * 120.00445 * 359.97438 * 10 8 7 12 12 C 1.40055 * 120.00070 * 179.97438 * 10 8 7 13 13 N 1.30671 * 119.99584 * 359.97438 * 12 10 8 14 14 Si 1.86801 * 120.00214 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46831 * 90.00038 * 14 12 10 16 16 H 1.48497 * 109.46949 * 209.99817 * 14 12 10 17 17 H 1.48496 * 109.46878 * 329.99548 * 14 12 10 18 18 C 1.47582 * 91.01717 * 24.63912 * 7 6 4 19 19 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 21 21 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 22 22 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 23 23 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 24 24 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 25 25 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 26 26 H 0.96695 * 114.00520 * 180.02562 * 5 4 2 27 27 H 1.09002 * 113.76573 * 336.34714 * 6 4 2 28 28 H 1.09003 * 113.76623 * 107.74368 * 6 4 2 29 29 H 0.97005 * 119.99594 * 180.02562 * 13 12 10 30 30 H 1.08999 * 113.76680 * 221.05602 * 18 7 6 31 31 H 1.08998 * 113.86821 * 89.67404 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.4020 -0.2771 -2.4484 6 6 2.0922 -2.2528 -1.1029 7 7 3.3941 -2.1739 -1.7934 8 6 4.1244 -3.0318 -2.5331 9 8 5.1965 -2.6813 -2.9897 10 6 3.6279 -4.3851 -2.7872 11 1 2.6766 -4.6964 -2.3816 12 6 4.3866 -5.2765 -3.5563 13 7 5.5374 -4.8997 -4.0474 14 14 3.7533 -7.0038 -3.8799 15 1 2.9429 -7.0088 -5.1243 16 1 4.9026 -7.9315 -4.0340 17 1 2.9113 -7.4442 -2.7388 18 6 3.5752 -0.7784 -1.3486 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 1.8934 -0.5139 0.8900 23 1 3.1299 1.4426 -0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6767 1.9564 0.8899 26 1 1.7128 -0.7235 -3.2478 27 1 2.1628 -2.5932 -0.0697 28 1 1.3236 -2.7750 -1.6726 29 1 6.0627 -5.5170 -4.5804 30 1 3.9906 -0.1236 -2.1146 31 1 4.0814 -0.6838 -0.3880 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307414523.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:27 Heat of formation + Delta-G solvation = -89.273232 kcal Electronic energy + Delta-G solvation = -14613.517361 eV Core-core repulsion = 12087.781501 eV Total energy + Delta-G solvation = -2525.735860 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.37892 -38.48524 -35.71249 -35.15225 -34.66882 -29.92878 -28.34026 -27.71063 -26.50398 -23.68131 -21.02806 -20.68160 -18.69185 -17.90697 -17.17536 -16.58820 -16.17826 -15.81855 -15.22287 -14.80124 -14.63172 -14.05033 -13.88353 -13.59482 -13.24759 -13.04855 -12.89608 -12.76673 -12.73690 -12.44330 -12.03279 -11.88208 -11.68769 -11.45621 -10.99361 -10.74378 -9.91211 -9.26527 -8.35963 -6.93334 1.36506 1.38166 1.54000 2.16924 2.36189 2.56051 3.16658 3.36551 3.47888 3.84263 4.01839 4.34371 4.42675 4.53088 4.58624 4.68815 4.73409 4.94415 5.00327 5.05317 5.11890 5.15478 5.25062 5.32548 5.50134 5.60417 5.89783 6.33945 6.60364 6.79523 7.48323 8.36597 8.59728 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.053011 B = 0.007848 C = 0.007232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.065715 B = 3566.813637 C = 3870.557681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.069 4.069 3 C -0.143 4.143 4 C 0.128 3.872 5 O -0.541 6.541 6 C 0.083 3.917 7 N -0.680 5.680 8 C 0.558 3.442 9 O -0.634 6.634 10 C -0.564 4.564 11 H 0.084 0.916 12 C 0.028 3.972 13 N -0.823 5.823 14 Si 1.001 2.999 15 H -0.259 1.259 16 H -0.270 1.270 17 H -0.249 1.249 18 C 0.070 3.930 19 H 0.054 0.946 20 H 0.073 0.927 21 H 0.050 0.950 22 H 0.099 0.901 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.077 0.923 26 H 0.383 0.617 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.277 0.723 30 H 0.052 0.948 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.147 5.792 8.250 15.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.088 4.088 3 C -0.201 4.201 4 C 0.085 3.915 5 O -0.346 6.346 6 C -0.040 4.040 7 N -0.419 5.419 8 C 0.366 3.634 9 O -0.521 6.521 10 C -0.600 4.600 11 H 0.102 0.898 12 C -0.187 4.187 13 N -0.452 5.452 14 Si 0.819 3.181 15 H -0.183 1.183 16 H -0.195 1.195 17 H -0.172 1.172 18 C -0.053 4.053 19 H 0.074 0.926 20 H 0.092 0.908 21 H 0.069 0.931 22 H 0.117 0.883 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.096 0.904 26 H 0.231 0.769 27 H 0.112 0.888 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.605 6.206 8.195 14.769 hybrid contribution 0.735 -1.083 -0.862 1.567 sum -9.870 5.123 7.333 13.320 Atomic orbital electron populations 1.21675 0.93357 1.02131 1.02201 1.21090 0.97587 0.96716 0.93423 1.21790 1.00813 0.94996 1.02462 1.22756 0.89314 0.92133 0.87278 1.86319 1.65470 1.66260 1.16586 1.23872 0.85267 0.96905 0.98006 1.50156 1.23439 1.14101 1.54241 1.18431 0.82538 0.85284 0.77180 1.90558 1.25318 1.79042 1.57231 1.21317 1.07457 0.95882 1.35383 0.89792 1.27045 0.93792 1.05219 0.92690 1.70189 1.11801 1.37616 1.25586 0.84979 0.78631 0.74524 0.79937 1.18334 1.19514 1.17199 1.23822 0.98223 0.84018 0.99269 0.92643 0.90840 0.93051 0.88299 0.93063 0.93160 0.90436 0.76874 0.88837 0.90695 0.91347 0.92953 0.89655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 8.95 71.98 0.64 -2.04 16 2 C -0.07 -1.54 2.58 -10.79 -0.03 -1.57 16 3 C -0.14 -2.95 8.98 71.98 0.65 -2.30 16 4 C 0.13 3.86 0.99 -10.13 -0.01 3.85 16 5 O -0.54 -17.08 12.62 -148.98 -1.88 -18.96 16 6 C 0.08 2.87 7.80 86.48 0.67 3.54 16 7 N -0.68 -31.80 3.49 -845.25 -2.95 -34.75 16 8 C 0.56 33.63 7.98 86.36 0.69 34.32 16 9 O -0.63 -44.35 15.75 -4.31 -0.07 -44.42 16 10 C -0.56 -32.72 9.33 24.83 0.23 -32.49 16 11 H 0.08 4.41 7.67 -2.91 -0.02 4.39 16 12 C 0.03 1.56 5.50 85.31 0.47 2.03 16 13 N -0.82 -51.15 11.83 21.84 0.26 -50.90 16 14 Si 1.00 41.16 29.56 68.60 2.03 43.19 16 15 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 16 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 17 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 18 C 0.07 2.66 7.25 86.48 0.63 3.28 16 19 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 20 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 21 H 0.05 1.14 7.61 -2.39 -0.02 1.13 16 22 H 0.10 1.92 7.94 -2.39 -0.02 1.90 16 23 H 0.05 1.09 7.43 -2.39 -0.02 1.08 16 24 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.38 12.47 8.90 -74.06 -0.66 11.81 16 27 H 0.09 2.82 7.96 -2.39 -0.02 2.80 16 28 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.28 15.48 8.29 -92.70 -0.77 14.71 16 30 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.09 2.92 8.06 -2.39 -0.02 2.90 16 Total: -1.00 -77.26 266.63 1.79 -75.47 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.46 Total: 21.74 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 3.94 Total: 8.62 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -2.70 Total: -85.65 kcal Atomic # 8 Polarization: -61.43 SS G_CDS: -1.95 Total: -63.38 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -77.26 1.79 -75.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307414523.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.800 kcal (2) G-P(sol) polarization free energy of solvation -77.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds