Wall clock time and date at job start Sun Mar 29 2020 21:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86795 * 120.00648 * 2 1 4 4 H 1.48500 * 109.47048 * 239.99695 * 3 2 1 5 5 H 1.48500 * 109.46905 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47148 * 119.99582 * 3 2 1 7 7 C 1.40052 * 119.99654 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00396 * 180.02562 * 7 2 1 9 9 C 1.46381 * 119.99917 * 0.02562 * 7 2 1 10 10 O 1.21685 * 119.99972 * 0.02562 * 9 7 2 11 11 N 1.34770 * 120.00067 * 179.97438 * 9 7 2 12 12 N 1.40100 * 120.00234 * 179.97438 * 11 9 7 13 13 C 1.46380 * 119.32983 * 105.00027 * 12 11 9 14 14 C 1.53242 * 109.15205 * 150.96605 * 13 12 11 15 15 C 1.53242 * 108.56481 * 55.48200 * 14 13 12 16 16 N 1.46382 * 109.15108 * 304.51860 * 15 14 13 17 17 C 1.34136 * 121.34052 * 29.31730 * 16 15 14 18 18 O 1.21588 * 118.69512 * 179.14852 * 17 16 15 19 19 H 0.97008 * 119.99424 * 0.02562 * 1 2 3 20 20 H 0.97001 * 119.99987 * 0.02562 * 11 9 7 21 21 H 1.09002 * 109.52172 * 31.06812 * 13 12 11 22 22 H 1.08997 * 109.57992 * 270.90281 * 13 12 11 23 23 H 1.09001 * 109.62162 * 295.75706 * 14 13 12 24 24 H 1.08998 * 109.77253 * 175.29619 * 14 13 12 25 25 H 1.08997 * 109.52104 * 184.61558 * 15 14 13 26 26 H 1.09000 * 109.57241 * 64.45514 * 15 14 13 27 27 H 0.97001 * 119.32574 * 209.03079 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 3.0946 1.6961 -1.2125 5 1 1.2759 2.7464 -0.0006 6 1 3.0945 1.6962 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0868 -1.2131 0.0010 9 6 1.2749 -2.4806 0.0005 10 8 0.0580 -2.4805 -0.0004 11 7 1.9486 -3.6478 0.0005 12 7 1.2481 -4.8610 0.0011 13 6 1.1751 -5.6474 -1.2314 14 6 1.0473 -7.1320 -0.8737 15 6 -0.1662 -7.3098 0.0451 16 7 -0.0204 -6.4331 1.2083 17 6 0.6530 -5.2758 1.1296 18 8 0.7311 -4.5771 2.1216 19 1 -0.4850 0.8402 -0.0004 20 1 2.9186 -3.6479 0.0009 21 1 2.0805 -5.4906 -1.8176 22 1 0.3067 -5.3366 -1.8121 23 1 1.9486 -7.4631 -0.3578 24 1 0.9084 -7.7194 -1.7813 25 1 -0.2241 -8.3469 0.3754 26 1 -1.0755 -7.0486 -0.4963 27 1 -0.4225 -6.6925 2.0520 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307465695.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:53 Heat of formation + Delta-G solvation = -60.294104 kcal Electronic energy + Delta-G solvation = -14478.898714 eV Core-core repulsion = 11850.879140 eV Total energy + Delta-G solvation = -2628.019574 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.090 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.57788 -39.03022 -37.45407 -36.02869 -34.60084 -32.72431 -31.20887 -28.32142 -26.45932 -24.31823 -22.50193 -20.10346 -19.65791 -18.54427 -18.26668 -17.56749 -16.87155 -16.54298 -15.84448 -15.31361 -14.69842 -14.67629 -14.48084 -14.41297 -13.33585 -13.04810 -12.72191 -12.71285 -12.35504 -12.26116 -12.06533 -11.28182 -10.95136 -10.41698 -10.08564 -9.92934 -9.43741 -8.33245 -6.93064 1.12421 1.41557 1.45648 1.57912 2.17466 2.26860 2.44892 2.74674 3.56810 3.70526 3.85778 3.93930 4.29510 4.52546 4.65180 4.77090 4.78557 5.18781 5.27729 5.44628 5.71949 6.09892 6.12835 6.49733 6.80109 6.85232 7.34947 7.65038 8.49269 8.64608 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.064168 B = 0.008198 C = 0.007927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.250171 B = 3414.763628 C = 3531.467938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.027 3.973 3 Si 1.009 2.991 4 H -0.245 1.245 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.564 4.564 8 H 0.097 0.903 9 C 0.544 3.456 10 O -0.618 6.618 11 N -0.538 5.538 12 N -0.422 5.422 13 C 0.107 3.893 14 C -0.134 4.134 15 C 0.101 3.899 16 N -0.728 5.728 17 C 0.697 3.303 18 O -0.649 6.649 19 H 0.276 0.724 20 H 0.409 0.591 21 H 0.100 0.900 22 H 0.048 0.952 23 H 0.085 0.915 24 H 0.145 0.855 25 H 0.128 0.872 26 H 0.064 0.936 27 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.622 -13.914 -4.838 15.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.188 4.188 3 Si 0.827 3.173 4 H -0.169 1.169 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.602 4.602 8 H 0.115 0.885 9 C 0.348 3.652 10 O -0.502 6.502 11 N -0.289 5.289 12 N -0.248 5.248 13 C -0.015 4.015 14 C -0.173 4.173 15 C -0.022 4.022 16 N -0.388 5.388 17 C 0.397 3.603 18 O -0.530 6.530 19 H 0.086 0.914 20 H 0.250 0.750 21 H 0.119 0.881 22 H 0.066 0.934 23 H 0.103 0.897 24 H 0.162 0.838 25 H 0.146 0.854 26 H 0.083 0.917 27 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 3.699 -13.458 -4.541 14.677 hybrid contribution 0.186 0.710 0.471 0.872 sum 3.885 -12.748 -4.070 13.934 Atomic orbital electron populations 1.70211 1.09829 1.29246 1.36011 1.27104 0.95608 1.05187 0.90949 0.84913 0.78028 0.73802 0.80522 1.16886 1.19886 1.18056 1.21267 0.95062 0.88742 1.55155 0.88507 1.19102 0.87345 0.83032 0.75673 1.90544 1.16267 1.86777 1.56578 1.45251 1.06190 0.94781 1.82717 1.45727 1.54479 1.14611 1.10033 1.22135 1.03143 0.91385 0.84797 1.22268 0.99175 0.92916 1.02931 1.21934 0.98472 0.95621 0.86146 1.44905 1.57946 1.19681 1.16294 1.15953 0.79242 0.82111 0.82955 1.90893 1.67720 1.57024 1.37365 0.91421 0.75022 0.88139 0.93373 0.89673 0.83761 0.85355 0.91750 0.74419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.77 11.83 21.84 0.26 -52.51 15 2 C 0.03 1.54 5.50 85.31 0.47 2.01 15 3 Si 1.01 42.07 29.56 68.60 2.03 44.10 15 4 H -0.25 -9.30 7.11 99.48 0.71 -8.59 15 5 H -0.27 -11.02 7.11 99.48 0.71 -10.31 15 6 H -0.26 -10.19 7.11 99.48 0.71 -9.48 15 7 C -0.56 -33.44 9.54 24.83 0.24 -33.20 15 8 H 0.10 5.01 7.85 -2.91 -0.02 4.99 15 9 C 0.54 34.07 7.38 86.36 0.64 34.71 15 10 O -0.62 -44.74 15.10 -4.30 -0.06 -44.81 15 11 N -0.54 -27.06 5.50 -176.63 -0.97 -28.03 15 12 N -0.42 -18.44 3.16 -479.84 -1.51 -19.96 15 13 C 0.11 3.16 6.81 86.48 0.59 3.75 15 14 C -0.13 -2.32 6.20 30.76 0.19 -2.13 15 15 C 0.10 1.92 7.21 86.48 0.62 2.55 15 16 N -0.73 -23.04 5.58 -479.84 -2.68 -25.72 15 17 C 0.70 32.23 7.91 179.45 1.42 33.65 15 18 O -0.65 -38.19 17.00 -3.99 -0.07 -38.26 15 19 H 0.28 15.96 8.29 -92.70 -0.77 15.20 15 20 H 0.41 17.49 8.81 -213.32 -1.88 15.61 15 21 H 0.10 2.53 8.14 -2.39 -0.02 2.51 15 22 H 0.05 1.56 8.14 -2.39 -0.02 1.54 15 23 H 0.08 1.41 8.14 -2.39 -0.02 1.39 15 24 H 0.14 1.22 8.14 -2.39 -0.02 1.20 15 25 H 0.13 1.29 8.14 -2.39 -0.02 1.27 15 26 H 0.06 1.25 8.14 -2.39 -0.02 1.23 15 27 H 0.42 11.81 8.88 -92.71 -0.82 10.98 15 Total: -1.00 -95.99 242.27 -0.34 -96.33 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: -1.49 Total: 27.53 kcal Atomic # 6 Polarization: 37.15 SS G_CDS: 4.17 Total: 41.32 kcal Atomic # 7 Polarization: -121.31 SS G_CDS: -4.91 Total: -126.21 kcal Atomic # 8 Polarization: -82.93 SS G_CDS: -0.13 Total: -83.06 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -95.99 -0.34 -96.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307465695.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.034 kcal (2) G-P(sol) polarization free energy of solvation -95.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds