Wall clock time and date at job start Sun Mar 29 2020 22:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20826 * 119.99712 * 359.72483 * 3 2 1 5 5 C 1.50700 * 120.00068 * 180.02562 * 3 2 1 6 6 C 1.52998 * 110.88669 * 300.70238 * 5 3 2 7 7 C 1.55154 * 111.00378 * 176.81690 * 5 3 2 8 8 C 1.54368 * 102.92089 * 206.45100 * 7 5 3 9 9 N 1.47018 * 107.28586 * 22.14522 * 8 7 5 10 10 C 1.36944 * 125.64915 * 181.05372 * 9 8 7 11 11 H 1.08000 * 119.99917 * 180.02562 * 10 9 8 12 12 C 1.38812 * 119.99741 * 0.03909 * 10 9 8 13 13 N 1.31621 * 120.00097 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99866 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47379 * 60.00444 * 14 12 10 16 16 H 1.48507 * 109.47244 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47637 * 300.00115 * 14 12 10 18 18 C 1.47431 * 108.70553 * 1.08678 * 9 8 7 19 19 H 1.08996 * 109.47465 * 60.00089 * 1 2 3 20 20 H 1.08995 * 109.47281 * 180.02562 * 1 2 3 21 21 H 1.09012 * 109.47257 * 300.00032 * 1 2 3 22 22 H 1.09001 * 109.47176 * 59.29336 * 6 5 3 23 23 H 1.08995 * 109.47447 * 179.29810 * 6 5 3 24 24 H 1.09003 * 109.46650 * 299.29818 * 6 5 3 25 25 H 1.08997 * 110.72383 * 324.78950 * 7 5 3 26 26 H 1.09008 * 110.71664 * 88.06121 * 7 5 3 27 27 H 1.08999 * 109.85083 * 262.73579 * 8 7 5 28 28 H 1.09006 * 110.02717 * 141.64729 * 8 7 5 29 29 H 0.96999 * 119.99991 * 179.97438 * 13 12 10 30 30 H 1.08999 * 110.36713 * 217.03555 * 18 9 8 31 31 H 1.08998 * 110.36318 * 94.71715 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0050 5 6 3.5663 1.2749 -0.0006 6 6 4.1497 0.5744 1.2281 7 6 4.0459 2.7483 -0.0809 8 6 5.4354 2.6235 -0.7417 9 7 5.4618 1.3438 -1.4650 10 6 6.5259 0.8469 -2.1694 11 1 6.4447 -0.1073 -2.6687 12 6 7.7088 1.5696 -2.2413 13 7 7.8076 2.7326 -1.6330 14 14 9.1606 0.8915 -3.2015 15 1 8.7695 0.7012 -4.6215 16 1 10.2947 1.8472 -3.1248 17 1 9.5716 -0.4126 -2.6223 18 6 4.1526 0.6844 -1.3071 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8901 22 1 3.8433 -0.4716 1.2296 23 1 5.2376 0.6343 1.1982 24 1 3.7837 1.0615 2.1320 25 1 3.3745 3.3391 -0.7040 26 1 4.1297 3.1814 0.9159 27 1 6.2114 2.6328 0.0236 28 1 5.5925 3.4466 -1.4389 29 1 8.6344 3.2374 -1.6830 30 1 4.2801 -0.3940 -1.2123 31 1 3.5059 0.9178 -2.1528 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307479195.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:18 Heat of formation + Delta-G solvation = -63.702122 kcal Electronic energy + Delta-G solvation = -14796.677359 eV Core-core repulsion = 12272.050345 eV Total energy + Delta-G solvation = -2524.627014 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.41171 -37.65817 -36.09016 -33.11146 -30.38216 -28.77450 -27.50253 -26.04568 -24.37931 -22.20033 -20.23397 -19.11426 -17.05625 -16.96223 -16.10863 -15.91968 -14.65475 -14.24193 -13.85567 -13.41677 -13.12337 -12.70195 -12.37726 -12.06335 -11.75004 -11.55493 -11.48201 -10.98068 -10.79973 -10.64435 -10.37501 -10.25334 -10.14802 -9.92054 -9.83052 -9.63100 -8.59799 -6.86384 -5.72079 -3.06532 2.49754 2.96757 3.41263 3.45483 3.46762 4.48995 4.93212 5.09493 5.15609 5.21690 5.34029 5.49644 5.52894 5.62771 5.73581 6.08643 6.13935 6.27610 6.44130 6.51121 6.51800 6.60495 6.68377 6.77846 7.54678 7.61370 7.81440 8.03210 8.23365 9.20147 9.79684 10.45126 11.39566 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.058099 B = 0.007991 C = 0.007567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.823127 B = 3503.188955 C = 3699.177362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.480 3.520 4 O -0.513 6.513 5 C -0.073 4.073 6 C -0.125 4.125 7 C -0.123 4.123 8 C 0.178 3.822 9 N -0.601 5.601 10 C -0.231 4.231 11 H 0.079 0.921 12 C -0.007 4.007 13 N -0.922 5.922 14 Si 0.914 3.086 15 H -0.285 1.285 16 H -0.290 1.290 17 H -0.285 1.285 18 C 0.156 3.844 19 H 0.060 0.940 20 H 0.097 0.903 21 H 0.059 0.941 22 H 0.061 0.939 23 H 0.083 0.917 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.254 0.746 30 H 0.052 0.948 31 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.201 -4.541 4.598 12.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.323 3.677 4 O -0.400 6.400 5 C -0.075 4.075 6 C -0.182 4.182 7 C -0.162 4.162 8 C 0.053 3.947 9 N -0.328 5.328 10 C -0.359 4.359 11 H 0.097 0.903 12 C -0.203 4.203 13 N -0.569 5.569 14 Si 0.744 3.256 15 H -0.212 1.212 16 H -0.216 1.216 17 H -0.211 1.211 18 C 0.029 3.971 19 H 0.079 0.921 20 H 0.116 0.884 21 H 0.077 0.923 22 H 0.080 0.920 23 H 0.102 0.898 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -10.192 -4.169 4.540 11.911 hybrid contribution 0.450 -0.190 -0.514 0.709 sum -9.743 -4.359 4.026 11.407 Atomic orbital electron populations 1.23202 0.77370 1.03246 1.02222 1.86566 1.22608 1.33963 1.84119 1.23921 0.91889 0.80859 0.71008 1.90604 1.67175 1.36515 1.45724 1.21838 0.84898 1.00504 1.00280 1.21641 1.02988 0.99484 0.94103 1.22985 0.99842 0.91907 1.01447 1.21224 0.89959 0.88598 0.94908 1.44425 1.08900 1.19241 1.60218 1.19018 0.89709 1.02641 1.24492 0.90300 1.24809 0.98009 0.96903 1.00576 1.69949 1.26396 1.13513 1.47040 0.86172 0.81977 0.77796 0.79630 1.21165 1.21589 1.21110 1.21448 0.88377 0.96370 0.90910 0.92134 0.88426 0.92273 0.91996 0.89827 0.93065 0.91208 0.91424 0.93112 0.93471 0.93609 0.92945 0.96228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 101.05 1.07 1.45 16 2 O -0.36 -5.49 10.52 -39.27 -0.41 -5.90 16 3 C 0.48 8.55 6.64 36.01 0.24 8.79 16 4 O -0.51 -10.03 15.49 -18.75 -0.29 -10.32 16 5 C -0.07 -1.37 0.89 -153.52 -0.14 -1.50 16 6 C -0.12 -2.07 8.53 37.16 0.32 -1.75 16 7 C -0.12 -2.48 5.56 -24.87 -0.14 -2.62 16 8 C 0.18 4.34 5.03 -3.04 -0.02 4.32 16 9 N -0.60 -15.33 3.38 -170.04 -0.58 -15.91 16 10 C -0.23 -6.37 10.28 -15.06 -0.15 -6.53 16 11 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 12 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 13 N -0.92 -26.88 10.31 55.49 0.57 -26.31 16 14 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 C 0.16 3.31 6.15 -2.53 -0.02 3.29 16 19 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 20 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 21 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 22 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 23 H 0.08 1.54 7.86 -51.93 -0.41 1.13 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 1.43 7.44 -51.93 -0.39 1.04 16 26 H 0.07 1.23 8.05 -51.92 -0.42 0.82 16 27 H 0.05 1.34 7.38 -51.93 -0.38 0.95 16 28 H 0.05 1.28 7.50 -51.93 -0.39 0.89 16 29 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.05 1.06 8.05 -51.93 -0.42 0.64 16 31 H 0.02 0.43 8.03 -51.93 -0.42 0.01 16 LS Contribution 260.83 15.07 3.93 3.93 Total: -1.00 -30.80 260.83 -5.21 -36.02 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -4.48 Total: -3.59 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 1.07 Total: 5.17 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.00 Total: -42.22 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.70 Total: -16.22 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.80 -5.21 -36.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307479195.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.687 kcal (2) G-P(sol) polarization free energy of solvation -30.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds