Wall clock time and date at job start Sun Mar 29 2020 22:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20826 * 119.99712 * 359.72483 * 3 2 1 5 5 C 1.50700 * 120.00068 * 180.02562 * 3 2 1 6 6 C 1.52998 * 110.88669 * 300.70238 * 5 3 2 7 7 C 1.55154 * 111.00378 * 176.81690 * 5 3 2 8 8 C 1.54368 * 102.92089 * 206.45100 * 7 5 3 9 9 N 1.47018 * 107.28586 * 22.14522 * 8 7 5 10 10 C 1.36944 * 125.64915 * 181.05372 * 9 8 7 11 11 H 1.08000 * 119.99917 * 180.02562 * 10 9 8 12 12 C 1.38812 * 119.99741 * 0.03909 * 10 9 8 13 13 N 1.31621 * 120.00097 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99866 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47379 * 60.00444 * 14 12 10 16 16 H 1.48507 * 109.47244 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47637 * 300.00115 * 14 12 10 18 18 C 1.47431 * 108.70553 * 1.08678 * 9 8 7 19 19 H 1.08996 * 109.47465 * 60.00089 * 1 2 3 20 20 H 1.08995 * 109.47281 * 180.02562 * 1 2 3 21 21 H 1.09012 * 109.47257 * 300.00032 * 1 2 3 22 22 H 1.09001 * 109.47176 * 59.29336 * 6 5 3 23 23 H 1.08995 * 109.47447 * 179.29810 * 6 5 3 24 24 H 1.09003 * 109.46650 * 299.29818 * 6 5 3 25 25 H 1.08997 * 110.72383 * 324.78950 * 7 5 3 26 26 H 1.09008 * 110.71664 * 88.06121 * 7 5 3 27 27 H 1.08999 * 109.85083 * 262.73579 * 8 7 5 28 28 H 1.09006 * 110.02717 * 141.64729 * 8 7 5 29 29 H 0.96999 * 119.99991 * 179.97438 * 13 12 10 30 30 H 1.08999 * 110.36713 * 217.03555 * 18 9 8 31 31 H 1.08998 * 110.36318 * 94.71715 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0050 5 6 3.5663 1.2749 -0.0006 6 6 4.1497 0.5744 1.2281 7 6 4.0459 2.7483 -0.0809 8 6 5.4354 2.6235 -0.7417 9 7 5.4618 1.3438 -1.4650 10 6 6.5259 0.8469 -2.1694 11 1 6.4447 -0.1073 -2.6687 12 6 7.7088 1.5696 -2.2413 13 7 7.8076 2.7326 -1.6330 14 14 9.1606 0.8915 -3.2015 15 1 8.7695 0.7012 -4.6215 16 1 10.2947 1.8472 -3.1248 17 1 9.5716 -0.4126 -2.6223 18 6 4.1526 0.6844 -1.3071 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8901 22 1 3.8433 -0.4716 1.2296 23 1 5.2376 0.6343 1.1982 24 1 3.7837 1.0615 2.1320 25 1 3.3745 3.3391 -0.7040 26 1 4.1297 3.1814 0.9159 27 1 6.2114 2.6328 0.0236 28 1 5.5925 3.4466 -1.4389 29 1 8.6344 3.2374 -1.6830 30 1 4.2801 -0.3940 -1.2123 31 1 3.5059 0.9178 -2.1528 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307479195.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:17 Heat of formation + Delta-G solvation = -82.823386 kcal Electronic energy + Delta-G solvation = -14797.506519 eV Core-core repulsion = 12272.050345 eV Total energy + Delta-G solvation = -2525.456174 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.80319 -39.29006 -37.45188 -35.02069 -32.26448 -30.52199 -28.55440 -27.74834 -26.18017 -23.69167 -22.14447 -20.59012 -18.96515 -18.30269 -17.48760 -17.36693 -16.64026 -15.91851 -15.42714 -14.87455 -14.65000 -14.15727 -14.01597 -13.62476 -13.21162 -13.05688 -12.94005 -12.84122 -12.63497 -12.10403 -12.05417 -11.88589 -11.79807 -11.71363 -11.61549 -11.26791 -10.68416 -8.93119 -7.84172 -5.21145 1.10064 1.49189 1.52426 1.58587 1.72189 2.51469 3.34310 3.41243 3.57304 3.87897 3.92830 4.11504 4.34463 4.36221 4.50865 4.58822 4.71615 4.76354 4.85338 4.93192 5.00866 5.02538 5.27113 5.36660 5.46291 5.60941 5.74332 6.17688 6.69530 7.09031 7.74346 8.39121 9.26445 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.058099 B = 0.007991 C = 0.007567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.823127 B = 3503.188955 C = 3699.177362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.356 6.356 3 C 0.489 3.511 4 O -0.533 6.533 5 C -0.066 4.066 6 C -0.119 4.119 7 C -0.112 4.112 8 C 0.189 3.811 9 N -0.620 5.620 10 C -0.245 4.245 11 H 0.087 0.913 12 C -0.064 4.064 13 N -0.952 5.952 14 Si 0.981 3.019 15 H -0.279 1.279 16 H -0.295 1.295 17 H -0.274 1.274 18 C 0.154 3.846 19 H 0.059 0.941 20 H 0.135 0.865 21 H 0.066 0.934 22 H 0.081 0.919 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.025 0.975 28 H 0.009 0.991 29 H 0.248 0.752 30 H 0.065 0.935 31 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.340 -6.136 5.016 13.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C 0.333 3.667 4 O -0.422 6.422 5 C -0.068 4.068 6 C -0.176 4.176 7 C -0.151 4.151 8 C 0.064 3.936 9 N -0.346 5.346 10 C -0.374 4.374 11 H 0.105 0.895 12 C -0.257 4.257 13 N -0.600 5.600 14 Si 0.809 3.191 15 H -0.205 1.205 16 H -0.222 1.222 17 H -0.199 1.199 18 C 0.028 3.972 19 H 0.077 0.923 20 H 0.153 0.847 21 H 0.084 0.916 22 H 0.100 0.900 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.106 0.894 27 H 0.043 0.957 28 H 0.027 0.973 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -11.370 -5.804 4.960 13.696 hybrid contribution 0.700 0.260 -0.658 0.995 sum -10.670 -5.545 4.301 12.771 Atomic orbital electron populations 1.23604 0.74718 1.05882 1.02558 1.86530 1.25069 1.32217 1.83391 1.23467 0.91223 0.81339 0.70710 1.90604 1.67442 1.37349 1.46801 1.21688 0.86254 0.98995 0.99892 1.21603 1.01361 1.00724 0.93875 1.22798 0.96909 0.93456 1.01896 1.20919 0.91916 0.87317 0.93415 1.44672 1.10004 1.19896 1.60076 1.19450 0.90512 1.02945 1.24444 0.89487 1.25670 1.00751 0.97322 1.01919 1.70168 1.26620 1.14751 1.48502 0.85115 0.78328 0.77236 0.78398 1.20464 1.22153 1.19935 1.21546 0.86568 0.96917 0.92180 0.92252 0.84698 0.91571 0.90043 0.92111 0.90842 0.91704 0.89357 0.95676 0.97273 0.94267 0.91657 0.96594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.68 16 2 O -0.36 -9.86 10.52 -51.46 -0.54 -10.40 16 3 C 0.49 16.29 6.64 71.24 0.47 16.76 16 4 O -0.53 -19.80 15.49 21.96 0.34 -19.46 16 5 C -0.07 -2.38 0.89 -51.54 -0.05 -2.42 16 6 C -0.12 -3.66 8.53 71.98 0.61 -3.05 16 7 C -0.11 -4.48 5.56 31.80 0.18 -4.30 16 8 C 0.19 9.52 5.03 86.75 0.44 9.95 16 9 N -0.62 -31.94 3.38 -691.89 -2.34 -34.28 16 10 C -0.25 -13.62 10.28 84.03 0.86 -12.75 16 11 H 0.09 4.56 7.83 -2.91 -0.02 4.54 16 12 C -0.06 -3.59 5.49 84.86 0.47 -3.13 16 13 N -0.95 -57.11 10.31 21.65 0.22 -56.89 16 14 Si 0.98 45.35 29.55 68.60 2.03 47.37 16 15 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 16 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 18 C 0.15 6.39 6.15 86.85 0.53 6.92 16 19 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 20 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 21 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 22 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 23 H 0.06 2.18 7.86 -2.39 -0.02 2.16 16 24 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.06 2.65 7.44 -2.39 -0.02 2.63 16 26 H 0.09 3.13 8.05 -2.38 -0.02 3.12 16 27 H 0.03 1.37 7.38 -2.39 -0.02 1.35 16 28 H 0.01 0.52 7.50 -2.38 -0.02 0.50 16 29 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 30 H 0.07 2.54 8.05 -2.39 -0.02 2.52 16 31 H 0.02 0.69 8.03 -2.39 -0.02 0.67 16 Total: -1.00 -66.49 260.83 5.52 -60.96 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: 1.10 Total: 3.03 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 4.71 Total: 9.67 kcal Atomic # 7 Polarization: -89.06 SS G_CDS: -2.12 Total: -91.17 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -0.20 Total: -29.86 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -66.49 5.52 -60.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307479195.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.861 kcal (2) G-P(sol) polarization free energy of solvation -66.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds