Wall clock time and date at job start Sun Mar 29 2020 21:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.45306 * 2 1 4 4 C 1.53044 * 109.46137 * 119.96842 * 2 1 3 5 5 C 1.53121 * 109.27467 * 179.19741 * 4 2 1 6 6 C 1.53118 * 109.15998 * 302.34543 * 5 4 2 7 7 H 1.09001 * 109.50624 * 297.71626 * 6 5 4 8 8 N 1.46898 * 109.50421 * 177.60011 * 6 5 4 9 9 C 1.46898 * 111.00008 * 56.23960 * 8 6 5 10 10 C 1.46900 * 111.00245 * 180.19824 * 8 6 5 11 11 C 1.50705 * 109.46966 * 169.99759 * 10 8 6 12 12 H 1.07998 * 120.00056 * 0.02562 * 11 10 8 13 13 C 1.37881 * 119.99591 * 179.97438 * 11 10 8 14 14 N 1.31510 * 119.99679 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 119.99987 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47172 * 90.00117 * 15 13 11 17 17 H 1.48506 * 109.46911 * 209.99744 * 15 13 11 18 18 H 1.48503 * 109.47142 * 329.99641 * 15 13 11 19 19 C 1.53034 * 109.28068 * 57.65604 * 6 5 4 20 20 N 1.46847 * 109.46201 * 240.02281 * 2 1 3 21 21 H 1.09000 * 109.46931 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47201 * 299.97811 * 1 2 3 23 23 H 1.09002 * 109.47357 * 59.97693 * 1 2 3 24 24 H 1.08996 * 109.50067 * 59.25556 * 4 2 1 25 25 H 1.08993 * 109.50192 * 299.13624 * 4 2 1 26 26 H 1.09004 * 109.51709 * 182.44592 * 5 4 2 27 27 H 1.08992 * 109.57642 * 62.28071 * 5 4 2 28 28 H 1.08997 * 109.46999 * 60.00499 * 9 8 6 29 29 H 1.09006 * 109.47324 * 180.02562 * 9 8 6 30 30 H 1.09000 * 109.47550 * 300.00325 * 9 8 6 31 31 H 1.09001 * 109.46923 * 289.99512 * 10 8 6 32 32 H 1.09000 * 109.46889 * 49.99887 * 10 8 6 33 33 H 0.97006 * 120.00168 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.46341 * 180.80474 * 19 6 5 35 35 H 1.09003 * 109.45147 * 60.83100 * 19 6 5 36 36 H 1.00901 * 110.99839 * 54.14718 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2501 5 6 3.5710 -0.7359 1.2357 6 6 4.0548 -1.4187 -0.0466 7 1 3.7125 -2.4535 -0.0593 8 7 5.5226 -1.3863 -0.0957 9 6 6.1033 -2.0074 1.1021 10 6 6.0228 -2.0300 -1.3177 11 6 7.4999 -1.7649 -1.4566 12 1 8.0154 -1.1773 -0.7113 13 6 8.1931 -2.2733 -2.5345 14 7 9.4820 -2.0416 -2.6559 15 14 7.3015 -3.2901 -3.8230 16 1 6.7885 -2.3955 -4.8915 17 1 8.2417 -4.2768 -4.4127 18 1 6.1654 -4.0064 -3.1893 19 6 3.4865 -0.6777 -1.2590 20 7 2.0193 -0.6918 -1.1993 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5135 0.8902 23 1 -0.3634 0.5142 -0.8898 24 1 1.6659 -1.7446 1.2578 25 1 1.6895 -0.1980 2.1399 26 1 3.9379 -1.2862 2.1021 27 1 3.9466 0.2868 1.2677 28 1 5.7787 -3.0460 1.1665 29 1 7.1909 -1.9696 1.0402 30 1 5.7712 -1.4674 1.9888 31 1 5.8506 -3.1047 -1.2588 32 1 5.4980 -1.6246 -2.1828 33 1 9.9697 -2.3990 -3.4145 34 1 3.8175 -1.1700 -2.1734 35 1 3.8403 0.3532 -1.2530 36 1 1.6195 -0.2926 -2.0354 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307509850.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:51 Heat of formation + Delta-G solvation = 0.291823 kcal Electronic energy + Delta-G solvation = -14811.122019 eV Core-core repulsion = 12522.821748 eV Total energy + Delta-G solvation = -2288.300271 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.04206 -36.08490 -32.63554 -31.75815 -31.06817 -27.86330 -26.90279 -24.15743 -23.03214 -21.55943 -20.11420 -19.17964 -17.01180 -15.97507 -15.22025 -14.62748 -14.18224 -14.13085 -13.80734 -13.39549 -13.14449 -12.81276 -12.41593 -12.29075 -12.00191 -11.79268 -11.35208 -11.03587 -10.92822 -10.74929 -10.66224 -10.38740 -10.28200 -9.82014 -9.65393 -9.21962 -8.54000 -8.28580 -7.32055 -6.03441 -4.00168 3.29478 3.37123 3.40449 4.19491 4.43880 4.83990 4.87522 5.05097 5.12958 5.28658 5.36679 5.45982 5.65294 5.71150 5.76971 5.84341 5.99240 6.01054 6.11820 6.17689 6.19259 6.21661 6.31010 6.45733 6.61307 6.73490 6.91200 7.03391 7.19919 7.51646 7.63568 7.96250 8.10340 8.69164 9.05292 9.58705 11.09730 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044287 B = 0.007955 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.084223 B = 3518.884481 C = 3949.521832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.081 3.919 3 H 0.036 0.964 4 C -0.109 4.109 5 C -0.115 4.115 6 C 0.087 3.913 7 H 0.037 0.963 8 N -0.529 5.529 9 C 0.036 3.964 10 C 0.159 3.841 11 C -0.508 4.508 12 H 0.080 0.920 13 C 0.068 3.932 14 N -0.901 5.901 15 Si 0.873 3.127 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.267 1.267 19 C 0.064 3.936 20 N -0.688 5.688 21 H 0.062 0.938 22 H 0.057 0.943 23 H 0.051 0.949 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.010 0.990 29 H 0.079 0.921 30 H 0.050 0.950 31 H -0.012 1.012 32 H 0.027 0.973 33 H 0.263 0.737 34 H 0.079 0.921 35 H 0.040 0.960 36 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.860 2.619 5.507 16.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.028 4.028 3 H 0.054 0.946 4 C -0.148 4.148 5 C -0.153 4.153 6 C -0.023 4.023 7 H 0.054 0.946 8 N -0.254 5.254 9 C -0.112 4.112 10 C 0.032 3.968 11 C -0.546 4.546 12 H 0.098 0.902 13 C -0.133 4.133 14 N -0.541 5.541 15 Si 0.700 3.300 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.192 1.192 19 C -0.065 4.065 20 N -0.320 5.320 21 H 0.081 0.919 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.029 0.971 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.005 0.995 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.574 2.451 5.667 16.753 hybrid contribution -0.366 -0.496 -1.076 1.240 sum -15.940 1.955 4.590 16.703 Atomic orbital electron populations 1.21820 0.94791 1.02335 1.01276 1.21483 0.94599 0.95337 0.91425 0.94586 1.21608 0.95893 1.00999 0.96255 1.21689 0.94480 1.01427 0.97695 1.21521 0.89300 0.97395 0.94048 0.94558 1.61947 1.03293 1.56430 1.03714 1.22262 1.01735 0.95184 0.92023 1.20247 0.96928 0.91752 0.87845 1.21057 0.91062 1.33028 1.09458 0.90160 1.24895 0.94735 0.96011 0.97703 1.69895 1.07455 1.46034 1.30675 0.86894 0.80007 0.80754 0.82347 1.20158 1.21191 1.19186 1.21980 0.85799 0.99601 0.99098 1.60296 1.08012 1.59237 1.04461 0.91909 0.92383 0.92998 0.91485 0.91874 0.91836 0.91548 0.97130 0.90204 0.93092 0.99467 0.95514 0.92706 0.90303 0.94210 0.84273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.43 37.16 0.35 -1.05 16 2 C 0.08 0.99 3.04 -67.72 -0.21 0.79 16 3 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 4 C -0.11 -1.36 5.37 -26.65 -0.14 -1.50 16 5 C -0.12 -1.72 4.84 -26.61 -0.13 -1.85 16 6 C 0.09 1.56 2.10 -67.64 -0.14 1.42 16 7 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 8 N -0.53 -11.37 4.62 -236.23 -1.09 -12.46 16 9 C 0.04 0.72 8.93 60.06 0.54 1.25 16 10 C 0.16 3.92 3.60 -4.97 -0.02 3.91 16 11 C -0.51 -14.60 9.01 -34.44 -0.31 -14.91 16 12 H 0.08 2.51 7.37 -52.49 -0.39 2.12 16 13 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 14 N -0.90 -27.84 13.96 55.43 0.77 -27.06 16 15 Si 0.87 21.77 27.47 -169.99 -4.67 17.10 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 19 C 0.06 1.09 5.60 -3.83 -0.02 1.07 16 20 N -0.69 -9.57 6.50 -106.76 -0.69 -10.27 16 21 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.91 6.50 -51.93 -0.34 0.57 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.08 1.74 6.76 -51.93 -0.35 1.39 16 30 H 0.05 0.86 6.30 -51.93 -0.33 0.53 16 31 H -0.01 -0.32 7.18 -51.93 -0.37 -0.69 16 32 H 0.03 0.66 5.28 -51.93 -0.27 0.39 16 33 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 34 H 0.08 1.45 6.25 -51.93 -0.32 1.12 16 35 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.34 4.10 8.79 -39.29 -0.35 3.75 16 LS Contribution 274.86 15.07 4.14 4.14 Total: -1.00 -30.40 274.86 -7.83 -38.24 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -6.11 Total: -0.71 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -0.18 Total: -8.99 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: -1.01 Total: -49.79 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.40 -7.83 -38.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307509850.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.530 kcal (2) G-P(sol) polarization free energy of solvation -30.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds