Wall clock time and date at job start Sun Mar 29 2020 21:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.45306 * 2 1 4 4 C 1.53044 * 109.46137 * 119.96842 * 2 1 3 5 5 C 1.53121 * 109.27467 * 179.19741 * 4 2 1 6 6 C 1.53118 * 109.15998 * 302.34543 * 5 4 2 7 7 H 1.09001 * 109.50624 * 297.71626 * 6 5 4 8 8 N 1.46898 * 109.50421 * 177.60011 * 6 5 4 9 9 C 1.46898 * 111.00008 * 56.23960 * 8 6 5 10 10 C 1.46900 * 111.00245 * 180.19824 * 8 6 5 11 11 C 1.50705 * 109.46966 * 169.99759 * 10 8 6 12 12 H 1.07998 * 120.00056 * 0.02562 * 11 10 8 13 13 C 1.37881 * 119.99591 * 179.97438 * 11 10 8 14 14 N 1.31510 * 119.99679 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 119.99987 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47172 * 90.00117 * 15 13 11 17 17 H 1.48506 * 109.46911 * 209.99744 * 15 13 11 18 18 H 1.48503 * 109.47142 * 329.99641 * 15 13 11 19 19 C 1.53034 * 109.28068 * 57.65604 * 6 5 4 20 20 N 1.46847 * 109.46201 * 240.02281 * 2 1 3 21 21 H 1.09000 * 109.46931 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47201 * 299.97811 * 1 2 3 23 23 H 1.09002 * 109.47357 * 59.97693 * 1 2 3 24 24 H 1.08996 * 109.50067 * 59.25556 * 4 2 1 25 25 H 1.08993 * 109.50192 * 299.13624 * 4 2 1 26 26 H 1.09004 * 109.51709 * 182.44592 * 5 4 2 27 27 H 1.08992 * 109.57642 * 62.28071 * 5 4 2 28 28 H 1.08997 * 109.46999 * 60.00499 * 9 8 6 29 29 H 1.09006 * 109.47324 * 180.02562 * 9 8 6 30 30 H 1.09000 * 109.47550 * 300.00325 * 9 8 6 31 31 H 1.09001 * 109.46923 * 289.99512 * 10 8 6 32 32 H 1.09000 * 109.46889 * 49.99887 * 10 8 6 33 33 H 0.97006 * 120.00168 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.46341 * 180.80474 * 19 6 5 35 35 H 1.09003 * 109.45147 * 60.83100 * 19 6 5 36 36 H 1.00901 * 110.99839 * 54.14718 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2501 5 6 3.5710 -0.7359 1.2357 6 6 4.0548 -1.4187 -0.0466 7 1 3.7125 -2.4535 -0.0593 8 7 5.5226 -1.3863 -0.0957 9 6 6.1033 -2.0074 1.1021 10 6 6.0228 -2.0300 -1.3177 11 6 7.4999 -1.7649 -1.4566 12 1 8.0154 -1.1773 -0.7113 13 6 8.1931 -2.2733 -2.5345 14 7 9.4820 -2.0416 -2.6559 15 14 7.3015 -3.2901 -3.8230 16 1 6.7885 -2.3955 -4.8915 17 1 8.2417 -4.2768 -4.4127 18 1 6.1654 -4.0064 -3.1893 19 6 3.4865 -0.6777 -1.2590 20 7 2.0193 -0.6918 -1.1993 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5135 0.8902 23 1 -0.3634 0.5142 -0.8898 24 1 1.6659 -1.7446 1.2578 25 1 1.6895 -0.1980 2.1399 26 1 3.9379 -1.2862 2.1021 27 1 3.9466 0.2868 1.2677 28 1 5.7787 -3.0460 1.1665 29 1 7.1909 -1.9696 1.0402 30 1 5.7712 -1.4674 1.9888 31 1 5.8506 -3.1047 -1.2588 32 1 5.4980 -1.6246 -2.1828 33 1 9.9697 -2.3990 -3.4145 34 1 3.8175 -1.1700 -2.1734 35 1 3.8403 0.3532 -1.2530 36 1 1.6195 -0.2926 -2.0354 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307509850.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:51 Heat of formation + Delta-G solvation = -22.623292 kcal Electronic energy + Delta-G solvation = -14812.115693 eV Core-core repulsion = 12522.821748 eV Total energy + Delta-G solvation = -2289.293945 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.33827 -37.56203 -34.73328 -32.92465 -32.42357 -29.78801 -28.16039 -25.74478 -24.33695 -23.08773 -21.52502 -20.51893 -19.06828 -17.37488 -16.60811 -16.45086 -15.70075 -15.40747 -15.14987 -14.75654 -14.67000 -14.48590 -13.99530 -13.71464 -13.11286 -13.03303 -12.89363 -12.62043 -12.41003 -12.35067 -11.97911 -11.90278 -11.76748 -11.49036 -11.31587 -11.02492 -10.76228 -9.41085 -9.04861 -8.29765 -6.32583 1.32479 1.33984 1.45021 2.32677 2.95898 3.03317 3.48578 3.78343 3.94727 4.00761 4.19847 4.40722 4.43921 4.50102 4.63831 4.67919 4.74633 4.85363 4.87035 4.87464 4.96773 5.02129 5.07320 5.10666 5.19379 5.25655 5.34558 5.46965 5.54058 5.92554 6.11345 6.34089 6.51560 6.66171 6.73455 7.30841 8.86815 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044287 B = 0.007955 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.084223 B = 3518.884481 C = 3949.521832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.077 3.923 3 H 0.034 0.966 4 C -0.104 4.104 5 C -0.110 4.110 6 C 0.086 3.914 7 H 0.027 0.973 8 N -0.544 5.544 9 C 0.041 3.959 10 C 0.170 3.830 11 C -0.516 4.516 12 H 0.039 0.961 13 C 0.010 3.990 14 N -0.947 5.947 15 Si 0.943 3.057 16 H -0.263 1.263 17 H -0.279 1.279 18 H -0.256 1.256 19 C 0.070 3.930 20 N -0.687 5.687 21 H 0.059 0.941 22 H 0.075 0.925 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.089 0.911 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.016 0.984 29 H 0.049 0.951 30 H 0.082 0.918 31 H -0.019 1.019 32 H 0.033 0.967 33 H 0.267 0.733 34 H 0.061 0.939 35 H 0.029 0.971 36 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.621 2.453 5.623 19.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.033 4.033 3 H 0.052 0.948 4 C -0.143 4.143 5 C -0.148 4.148 6 C -0.023 4.023 7 H 0.045 0.955 8 N -0.269 5.269 9 C -0.108 4.108 10 C 0.043 3.957 11 C -0.554 4.554 12 H 0.057 0.943 13 C -0.187 4.187 14 N -0.587 5.587 15 Si 0.767 3.233 16 H -0.188 1.188 17 H -0.205 1.205 18 H -0.180 1.180 19 C -0.059 4.059 20 N -0.321 5.321 21 H 0.078 0.922 22 H 0.094 0.906 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.108 0.892 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.034 0.966 29 H 0.068 0.932 30 H 0.101 0.899 31 H -0.002 1.002 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.048 0.952 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -18.363 2.298 5.798 19.393 hybrid contribution 0.519 -0.379 -1.025 1.210 sum -17.843 1.918 4.773 18.570 Atomic orbital electron populations 1.21761 0.92480 1.02589 1.02636 1.21622 0.96383 0.94886 0.90383 0.94759 1.21616 0.93657 1.01414 0.97578 1.21662 0.96508 1.00637 0.95989 1.21628 0.86798 0.97455 0.96417 0.95499 1.61880 1.05811 1.56222 1.02944 1.22220 0.99862 0.96020 0.92660 1.19985 0.94393 0.91441 0.89867 1.21270 0.93240 1.32333 1.08587 0.94253 1.25805 0.95463 0.97313 1.00163 1.70042 1.09303 1.47569 1.31833 0.85770 0.78988 0.79188 0.79377 1.18757 1.20488 1.17967 1.21785 0.87919 0.98478 0.97757 1.60288 1.05854 1.59993 1.05924 0.92158 0.90627 0.92133 0.91637 0.89236 0.91172 0.92080 0.96584 0.93222 0.89913 1.00169 0.94956 0.92386 0.92094 0.95247 0.83019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.43 71.98 0.68 -1.49 16 2 C 0.08 1.65 3.04 44.94 0.14 1.78 16 3 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 4 C -0.10 -2.27 5.37 30.65 0.16 -2.11 16 5 C -0.11 -3.05 4.84 30.67 0.15 -2.90 16 6 C 0.09 3.00 2.10 44.97 0.09 3.10 16 7 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 8 N -0.54 -23.38 4.62 -901.31 -4.17 -27.55 16 9 C 0.04 1.60 8.93 127.69 1.14 2.74 16 10 C 0.17 8.48 3.60 85.56 0.31 8.78 16 11 C -0.52 -30.56 9.01 25.60 0.23 -30.33 16 12 H 0.04 2.59 7.37 -2.91 -0.02 2.56 16 13 C 0.01 0.59 5.47 84.66 0.46 1.05 16 14 N -0.95 -59.92 13.96 21.45 0.30 -59.62 16 15 Si 0.94 44.97 27.47 68.60 1.88 46.86 16 16 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 17 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 18 H -0.26 -11.63 6.54 99.48 0.65 -10.98 16 19 C 0.07 2.32 5.60 86.32 0.48 2.80 16 20 N -0.69 -17.69 6.50 -491.67 -3.20 -20.89 16 21 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.07 1.83 6.50 -2.39 -0.02 1.82 16 27 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 2.23 6.76 -2.38 -0.02 2.22 16 30 H 0.08 2.69 6.30 -2.39 -0.02 2.68 16 31 H -0.02 -0.98 7.18 -2.39 -0.02 -1.00 16 32 H 0.03 1.58 5.28 -2.39 -0.01 1.57 16 33 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 34 H 0.06 2.20 6.25 -2.39 -0.01 2.18 16 35 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.35 7.70 8.79 -89.69 -0.79 6.91 16 Total: -1.00 -66.41 274.86 -1.13 -67.54 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 0.20 Total: 10.23 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: 3.85 Total: -16.57 kcal Atomic # 7 Polarization: -100.98 SS G_CDS: -7.06 Total: -108.05 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.88 Total: 46.86 kcal Total: -66.41 -1.13 -67.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307509850.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.914 kcal (2) G-P(sol) polarization free energy of solvation -66.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds