Wall clock time and date at job start Sun Mar 29 2020 21:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.45895 * 2 1 4 4 C 1.53035 * 109.46363 * 119.97680 * 2 1 3 5 5 C 1.53128 * 109.30722 * 60.85500 * 4 2 1 6 6 C 1.53118 * 109.15931 * 57.60139 * 5 4 2 7 7 H 1.08998 * 109.50556 * 62.35770 * 6 5 4 8 8 N 1.46901 * 109.50318 * 182.44163 * 6 5 4 9 9 C 1.46894 * 111.00123 * 303.87073 * 8 6 5 10 10 C 1.46902 * 110.99644 * 179.91691 * 8 6 5 11 11 C 1.50706 * 109.46577 * 190.00011 * 10 8 6 12 12 H 1.07995 * 120.00167 * 359.72326 * 11 10 8 13 13 C 1.37879 * 119.99394 * 180.02562 * 11 10 8 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47474 * 90.00322 * 15 13 11 17 17 H 1.48507 * 109.46754 * 210.00056 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99887 * 15 13 11 19 19 C 1.53046 * 109.30872 * 302.39912 * 6 5 4 20 20 N 1.46851 * 109.46481 * 240.03046 * 2 1 3 21 21 H 1.08994 * 109.46995 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47214 * 299.97144 * 1 2 3 23 23 H 1.09001 * 109.46988 * 59.96685 * 1 2 3 24 24 H 1.08999 * 109.50239 * 180.77608 * 4 2 1 25 25 H 1.09002 * 109.50113 * 300.85564 * 4 2 1 26 26 H 1.08994 * 109.49254 * 297.70752 * 5 4 2 27 27 H 1.08999 * 109.55365 * 177.51748 * 5 4 2 28 28 H 1.09007 * 109.47149 * 296.05065 * 9 8 6 29 29 H 1.09002 * 109.47016 * 56.04488 * 9 8 6 30 30 H 1.08993 * 109.47669 * 176.04501 * 9 8 6 31 31 H 1.09000 * 109.47263 * 70.00212 * 10 8 6 32 32 H 1.09001 * 109.47582 * 309.99491 * 10 8 6 33 33 H 0.96996 * 119.99730 * 179.97438 * 14 13 11 34 34 H 1.08994 * 109.46218 * 179.17293 * 19 6 5 35 35 H 1.08997 * 109.46053 * 299.14878 * 19 6 5 36 36 H 1.00902 * 110.99884 * 65.81520 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 1.2499 5 6 1.5450 -2.1700 1.2359 6 6 2.0269 -2.8532 -0.0469 7 1 3.1165 -2.8756 -0.0600 8 7 1.5073 -4.2264 -0.0961 9 6 1.8982 -4.9804 1.1025 10 6 1.9493 -4.9129 -1.3173 11 6 1.2074 -6.2174 -1.4565 12 1 0.4838 -6.5094 -0.7100 13 6 1.4573 -7.0408 -2.5338 14 7 2.3432 -6.6882 -3.4396 15 14 0.5373 -8.6574 -2.7068 16 1 -0.7101 -8.4366 -3.4817 17 1 1.3939 -9.6407 -3.4172 18 1 0.1970 -9.1799 -1.3591 19 6 1.5173 -2.0704 -1.2593 20 7 2.0193 -0.6917 -1.1995 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5134 0.8902 23 1 -0.3633 0.5144 -0.8897 24 1 3.1298 -0.7093 1.2575 25 1 1.6643 -0.2160 2.1399 26 1 0.4556 -2.1826 1.2683 27 1 1.9422 -2.6995 2.1018 28 1 2.9833 -5.0805 1.1310 29 1 1.5588 -4.4499 1.9922 30 1 1.4426 -5.9701 1.0738 31 1 3.0199 -5.1084 -1.2571 32 1 1.7429 -4.2835 -2.1830 33 1 2.5192 -7.2677 -4.1972 34 1 1.8712 -2.5464 -2.1737 35 1 0.4274 -2.0607 -1.2533 36 1 1.7759 -0.1818 -2.0355 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307509851.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:54 Heat of formation + Delta-G solvation = 0.616388 kcal Electronic energy + Delta-G solvation = -14935.550961 eV Core-core repulsion = 12647.264764 eV Total energy + Delta-G solvation = -2288.286197 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.20643 -35.94864 -32.63354 -31.59300 -30.24947 -27.23597 -27.05261 -24.62078 -22.87785 -22.05683 -20.03770 -18.31762 -16.79871 -16.06934 -14.84697 -14.66914 -14.44509 -13.78393 -13.71008 -13.45539 -12.89988 -12.59712 -12.27595 -12.09623 -11.88030 -11.75125 -11.12550 -10.89307 -10.78471 -10.71515 -10.56096 -10.30835 -10.23885 -9.94560 -9.42242 -9.12913 -8.38617 -8.13651 -7.16811 -5.99579 -4.00524 3.33540 3.39325 3.43023 4.35491 4.47664 4.91742 5.04854 5.22156 5.28659 5.35585 5.42543 5.53857 5.63558 5.85301 5.91881 6.01064 6.08096 6.08632 6.20640 6.23277 6.33090 6.40586 6.45181 6.62601 6.75605 6.82418 7.21938 7.41176 7.44486 7.64241 7.84836 8.14575 8.26464 8.61508 9.07277 9.63276 11.11239 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049234 B = 0.007429 C = 0.007030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.570872 B = 3768.267084 C = 3981.744777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.083 3.917 3 H 0.075 0.925 4 C -0.109 4.109 5 C -0.116 4.116 6 C 0.090 3.910 7 H 0.035 0.965 8 N -0.539 5.539 9 C 0.038 3.962 10 C 0.190 3.810 11 C -0.506 4.506 12 H 0.062 0.938 13 C 0.054 3.946 14 N -0.899 5.899 15 Si 0.897 3.103 16 H -0.281 1.281 17 H -0.288 1.288 18 H -0.274 1.274 19 C 0.061 3.939 20 N -0.686 5.686 21 H 0.069 0.931 22 H 0.055 0.945 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.010 0.990 29 H 0.047 0.953 30 H 0.072 0.928 31 H -0.010 1.010 32 H 0.035 0.965 33 H 0.261 0.739 34 H 0.082 0.918 35 H 0.042 0.958 36 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.802 11.369 7.179 13.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.027 4.027 3 H 0.093 0.907 4 C -0.148 4.148 5 C -0.154 4.154 6 C -0.019 4.019 7 H 0.052 0.948 8 N -0.264 5.264 9 C -0.111 4.111 10 C 0.064 3.936 11 C -0.545 4.545 12 H 0.081 0.919 13 C -0.147 4.147 14 N -0.538 5.538 15 Si 0.725 3.275 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.067 4.067 20 N -0.316 5.316 21 H 0.088 0.912 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.029 0.971 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.007 0.993 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.060 0.940 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.623 11.136 7.280 13.403 hybrid contribution -0.480 -0.831 -0.488 1.076 sum -2.103 10.306 6.791 12.520 Atomic orbital electron populations 1.22591 0.97971 1.03000 1.01376 1.21517 0.92398 0.97291 0.91515 0.90731 1.21569 1.01097 0.95863 0.96241 1.21733 1.01276 0.94559 0.97824 1.21449 0.96625 0.90086 0.93761 0.94756 1.62129 1.59669 1.00365 1.04253 1.22226 0.97342 0.99186 0.92347 1.19800 0.93833 0.93630 0.86290 1.21188 1.22396 1.03022 1.07891 0.91949 1.24990 0.95428 0.98393 0.95861 1.69962 1.33701 1.37823 1.12358 0.86515 0.79581 0.83257 0.78144 1.20681 1.21344 1.19908 1.22014 0.97967 0.87414 0.99344 1.60451 1.63340 1.03411 1.04421 0.91165 0.92576 0.93183 0.91598 0.92029 0.91429 0.92132 0.97143 0.93400 0.90972 0.99269 0.94738 0.92977 0.89987 0.94000 0.84354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.28 8.59 37.16 0.32 -1.96 16 2 C 0.08 1.05 3.68 -67.72 -0.25 0.80 16 3 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.11 -1.42 5.61 -26.65 -0.15 -1.57 16 5 C -0.12 -1.79 4.54 -26.60 -0.12 -1.91 16 6 C 0.09 1.70 2.10 -67.63 -0.14 1.56 16 7 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 8 N -0.54 -11.92 4.62 -236.23 -1.09 -13.01 16 9 C 0.04 0.76 8.99 60.06 0.54 1.30 16 10 C 0.19 5.02 4.54 -4.97 -0.02 5.00 16 11 C -0.51 -14.41 8.52 -34.44 -0.29 -14.71 16 12 H 0.06 1.76 7.09 -52.49 -0.37 1.39 16 13 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 15 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 C 0.06 1.10 5.31 -3.82 -0.02 1.08 16 20 N -0.69 -10.10 6.65 -106.75 -0.71 -10.81 16 21 H 0.07 0.98 4.80 -51.93 -0.25 0.73 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 1.06 6.56 -51.93 -0.34 0.72 16 27 H 0.06 0.91 6.41 -51.93 -0.33 0.57 16 28 H 0.01 0.21 8.14 -51.92 -0.42 -0.22 16 29 H 0.05 0.82 6.07 -51.93 -0.32 0.50 16 30 H 0.07 1.54 6.85 -51.93 -0.36 1.18 16 31 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 32 H 0.03 0.96 5.85 -51.93 -0.30 0.66 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.08 1.66 6.25 -51.93 -0.32 1.34 16 35 H 0.04 0.76 6.19 -51.93 -0.32 0.44 16 36 H 0.34 4.38 8.90 -39.29 -0.35 4.03 16 LS Contribution 271.16 15.07 4.09 4.09 Total: -1.00 -29.74 271.16 -8.02 -37.75 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.78 Total: 0.35 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -0.24 Total: -8.95 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: -1.07 Total: -50.07 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.74 -8.02 -37.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307509851.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.371 kcal (2) G-P(sol) polarization free energy of solvation -29.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds