Wall clock time and date at job start Sun Mar 29 2020 21:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.45895 * 2 1 4 4 C 1.53035 * 109.46363 * 119.97680 * 2 1 3 5 5 C 1.53128 * 109.30722 * 60.85500 * 4 2 1 6 6 C 1.53118 * 109.15931 * 57.60139 * 5 4 2 7 7 H 1.08998 * 109.50556 * 62.35770 * 6 5 4 8 8 N 1.46901 * 109.50318 * 182.44163 * 6 5 4 9 9 C 1.46894 * 111.00123 * 303.87073 * 8 6 5 10 10 C 1.46902 * 110.99644 * 179.91691 * 8 6 5 11 11 C 1.50706 * 109.46577 * 190.00011 * 10 8 6 12 12 H 1.07995 * 120.00167 * 359.72326 * 11 10 8 13 13 C 1.37879 * 119.99394 * 180.02562 * 11 10 8 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47474 * 90.00322 * 15 13 11 17 17 H 1.48507 * 109.46754 * 210.00056 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99887 * 15 13 11 19 19 C 1.53046 * 109.30872 * 302.39912 * 6 5 4 20 20 N 1.46851 * 109.46481 * 240.03046 * 2 1 3 21 21 H 1.08994 * 109.46995 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47214 * 299.97144 * 1 2 3 23 23 H 1.09001 * 109.46988 * 59.96685 * 1 2 3 24 24 H 1.08999 * 109.50239 * 180.77608 * 4 2 1 25 25 H 1.09002 * 109.50113 * 300.85564 * 4 2 1 26 26 H 1.08994 * 109.49254 * 297.70752 * 5 4 2 27 27 H 1.08999 * 109.55365 * 177.51748 * 5 4 2 28 28 H 1.09007 * 109.47149 * 296.05065 * 9 8 6 29 29 H 1.09002 * 109.47016 * 56.04488 * 9 8 6 30 30 H 1.08993 * 109.47669 * 176.04501 * 9 8 6 31 31 H 1.09000 * 109.47263 * 70.00212 * 10 8 6 32 32 H 1.09001 * 109.47582 * 309.99491 * 10 8 6 33 33 H 0.96996 * 119.99730 * 179.97438 * 14 13 11 34 34 H 1.08994 * 109.46218 * 179.17293 * 19 6 5 35 35 H 1.08997 * 109.46053 * 299.14878 * 19 6 5 36 36 H 1.00902 * 110.99884 * 65.81520 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 1.2499 5 6 1.5450 -2.1700 1.2359 6 6 2.0269 -2.8532 -0.0469 7 1 3.1165 -2.8756 -0.0600 8 7 1.5073 -4.2264 -0.0961 9 6 1.8982 -4.9804 1.1025 10 6 1.9493 -4.9129 -1.3173 11 6 1.2074 -6.2174 -1.4565 12 1 0.4838 -6.5094 -0.7100 13 6 1.4573 -7.0408 -2.5338 14 7 2.3432 -6.6882 -3.4396 15 14 0.5373 -8.6574 -2.7068 16 1 -0.7101 -8.4366 -3.4817 17 1 1.3939 -9.6407 -3.4172 18 1 0.1970 -9.1799 -1.3591 19 6 1.5173 -2.0704 -1.2593 20 7 2.0193 -0.6917 -1.1995 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5134 0.8902 23 1 -0.3633 0.5144 -0.8897 24 1 3.1298 -0.7093 1.2575 25 1 1.6643 -0.2160 2.1399 26 1 0.4556 -2.1826 1.2683 27 1 1.9422 -2.6995 2.1018 28 1 2.9833 -5.0805 1.1310 29 1 1.5588 -4.4499 1.9922 30 1 1.4426 -5.9701 1.0738 31 1 3.0199 -5.1084 -1.2571 32 1 1.7429 -4.2835 -2.1830 33 1 2.5192 -7.2677 -4.1972 34 1 1.8712 -2.5464 -2.1737 35 1 0.4274 -2.0607 -1.2533 36 1 1.7759 -0.1818 -2.0355 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307509851.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:54 Heat of formation + Delta-G solvation = -21.413091 kcal Electronic energy + Delta-G solvation = -14936.506231 eV Core-core repulsion = 12647.264764 eV Total energy + Delta-G solvation = -2289.241467 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.54726 -37.56349 -34.73361 -32.86629 -31.68375 -29.20855 -28.28069 -26.32902 -24.31462 -23.68990 -21.63927 -19.63537 -18.61063 -17.72490 -16.72823 -16.16804 -15.65533 -15.47909 -15.19776 -15.01337 -14.27156 -14.00362 -13.85519 -13.66387 -13.39051 -12.99212 -12.83936 -12.74601 -12.42331 -12.32893 -12.15037 -11.96723 -11.53437 -11.37823 -11.17120 -10.95700 -10.57872 -9.34957 -9.02721 -8.20438 -6.30787 1.40237 1.42061 1.53150 2.39769 3.06169 3.11736 3.57183 3.82114 3.99633 4.06793 4.19870 4.38747 4.47472 4.55847 4.65446 4.70514 4.77214 4.80981 4.84240 5.00280 5.05164 5.08894 5.13823 5.21358 5.24470 5.30034 5.37206 5.54149 5.65744 6.03812 6.10090 6.34147 6.53456 6.67141 6.85706 7.38762 8.90748 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049234 B = 0.007429 C = 0.007030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.570872 B = 3768.267084 C = 3981.744777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.080 3.920 3 H 0.100 0.900 4 C -0.106 4.106 5 C -0.108 4.108 6 C 0.088 3.912 7 H 0.012 0.988 8 N -0.544 5.544 9 C 0.040 3.960 10 C 0.206 3.794 11 C -0.525 4.525 12 H 0.063 0.937 13 C 0.000 4.000 14 N -0.935 5.935 15 Si 0.971 3.029 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.264 1.264 19 C 0.073 3.927 20 N -0.690 5.690 21 H 0.046 0.954 22 H 0.077 0.923 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.093 0.907 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.003 0.997 29 H 0.085 0.915 30 H 0.057 0.943 31 H -0.048 1.048 32 H 0.014 0.986 33 H 0.264 0.736 34 H 0.046 0.954 35 H 0.038 0.962 36 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.938 12.226 8.615 15.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.029 4.029 3 H 0.118 0.882 4 C -0.144 4.144 5 C -0.146 4.146 6 C -0.021 4.021 7 H 0.030 0.970 8 N -0.269 5.269 9 C -0.108 4.108 10 C 0.080 3.920 11 C -0.563 4.563 12 H 0.081 0.919 13 C -0.198 4.198 14 N -0.576 5.576 15 Si 0.795 3.205 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.188 1.188 19 C -0.057 4.057 20 N -0.321 5.321 21 H 0.065 0.935 22 H 0.096 0.904 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.111 0.889 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.022 0.978 29 H 0.103 0.897 30 H 0.076 0.924 31 H -0.030 1.030 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.765 12.019 8.735 15.112 hybrid contribution -0.090 -1.020 -0.923 1.378 sum -2.855 10.999 7.812 13.790 Atomic orbital electron populations 1.22514 0.97162 1.01837 1.02813 1.21690 0.93052 0.98106 0.90096 0.88157 1.21597 1.00849 0.94189 0.97774 1.21684 1.01312 0.96066 0.95529 1.21571 0.95307 0.88714 0.96493 0.96988 1.62087 1.59700 1.01796 1.03277 1.22246 0.96889 0.98870 0.92817 1.19438 0.91381 0.93346 0.87859 1.21498 1.22637 1.03973 1.08194 0.91861 1.25944 0.96198 1.02326 0.95313 1.70099 1.35115 1.39391 1.12956 0.85363 0.78246 0.78315 0.78565 1.19779 1.20759 1.18796 1.21721 0.97459 0.89190 0.97299 1.60408 1.63520 1.02067 1.06148 0.93511 0.90448 0.92518 0.92116 0.88851 0.91247 0.91394 0.97797 0.89679 0.92401 1.03011 0.96844 0.92708 0.93577 0.94382 0.83170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.89 8.59 71.98 0.62 -3.28 16 2 C 0.08 1.80 3.68 44.94 0.17 1.97 16 3 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 4 C -0.11 -2.43 5.61 30.65 0.17 -2.26 16 5 C -0.11 -3.13 4.54 30.68 0.14 -2.99 16 6 C 0.09 3.37 2.10 44.97 0.09 3.47 16 7 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 8 N -0.54 -24.60 4.62 -901.29 -4.17 -28.76 16 9 C 0.04 1.61 8.99 127.69 1.15 2.76 16 10 C 0.21 11.45 4.54 85.56 0.39 11.84 16 11 C -0.52 -30.59 8.52 25.60 0.22 -30.38 16 12 H 0.06 3.60 7.09 -2.91 -0.02 3.58 16 13 C 0.00 0.00 5.46 84.66 0.46 0.46 16 14 N -0.94 -57.61 13.29 21.45 0.28 -57.32 16 15 Si 0.97 45.04 29.54 68.60 2.03 47.06 16 16 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 18 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 19 C 0.07 2.68 5.31 86.33 0.46 3.14 16 20 N -0.69 -19.79 6.65 -491.65 -3.27 -23.06 16 21 H 0.05 1.22 4.80 -2.39 -0.01 1.21 16 22 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 23 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.07 2.02 6.56 -2.39 -0.02 2.00 16 27 H 0.07 1.86 6.41 -2.39 -0.02 1.84 16 28 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 29 H 0.08 2.76 6.07 -2.39 -0.01 2.75 16 30 H 0.06 2.47 6.85 -2.39 -0.02 2.45 16 31 H -0.05 -2.94 8.12 -2.39 -0.02 -2.96 16 32 H 0.01 0.80 5.85 -2.39 -0.01 0.79 16 33 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 34 H 0.05 2.00 6.25 -2.39 -0.01 1.98 16 35 H 0.04 1.41 6.19 -2.39 -0.01 1.40 16 36 H 0.35 8.73 8.90 -89.69 -0.80 7.93 16 Total: -1.00 -65.58 271.16 -1.00 -66.58 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.26 Total: 10.78 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: 3.86 Total: -15.28 kcal Atomic # 7 Polarization: -101.99 SS G_CDS: -7.15 Total: -109.14 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -65.58 -1.00 -66.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307509851.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.163 kcal (2) G-P(sol) polarization free energy of solvation -65.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds