Wall clock time and date at job start Sun Mar 29 2020 21:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46169 * 2 1 4 4 C 1.53035 * 109.45714 * 240.02567 * 2 1 3 5 5 C 1.53117 * 109.28003 * 299.15727 * 4 2 1 6 6 C 1.53117 * 109.16345 * 302.35258 * 5 4 2 7 7 H 1.09004 * 109.50266 * 297.67110 * 6 5 4 8 8 N 1.46906 * 109.50496 * 177.59281 * 6 5 4 9 9 C 1.46901 * 110.99793 * 298.95508 * 8 6 5 10 10 C 1.46898 * 110.99820 * 174.99824 * 8 6 5 11 11 C 1.50706 * 109.46563 * 189.99919 * 10 8 6 12 12 H 1.07998 * 120.00168 * 359.97438 * 11 10 8 13 13 C 1.37880 * 119.99248 * 180.02562 * 11 10 8 14 14 N 1.31509 * 120.00492 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99607 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47166 * 89.99890 * 15 13 11 17 17 H 1.48491 * 109.47208 * 210.00081 * 15 13 11 18 18 H 1.48505 * 109.47202 * 330.00211 * 15 13 11 19 19 C 1.53034 * 109.27789 * 57.65034 * 6 5 4 20 20 N 1.46840 * 109.52820 * 300.82213 * 19 6 5 21 21 H 1.09002 * 109.47084 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46961 * 299.97254 * 1 2 3 23 23 H 1.09000 * 109.47092 * 59.97295 * 1 2 3 24 24 H 1.09003 * 109.50103 * 179.22594 * 4 2 1 25 25 H 1.08998 * 109.54280 * 59.12229 * 4 2 1 26 26 H 1.09005 * 109.52668 * 182.44267 * 5 4 2 27 27 H 1.09006 * 109.51974 * 62.25777 * 5 4 2 28 28 H 1.09002 * 109.47401 * 59.99808 * 9 8 6 29 29 H 1.09001 * 109.46874 * 299.99821 * 9 8 6 30 30 H 1.09004 * 109.46970 * 179.97438 * 9 8 6 31 31 H 1.08994 * 109.47410 * 309.99936 * 10 8 6 32 32 H 1.08999 * 109.47216 * 70.00266 * 10 8 6 33 33 H 0.97001 * 120.00000 * 180.02562 * 14 13 11 34 34 H 1.09003 * 109.46377 * 60.84008 * 19 6 5 35 35 H 1.09003 * 109.46519 * 180.80589 * 19 6 5 36 36 H 1.00897 * 111.00670 * 185.83988 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 1.5443 -2.1696 -1.2355 6 6 2.0269 -2.8531 0.0468 7 1 3.1167 -2.8756 0.0592 8 7 1.5074 -4.2264 0.0960 9 6 0.0385 -4.2334 0.1078 10 6 2.0467 -4.9520 1.2539 11 6 1.6942 -6.4128 1.1397 12 1 1.1260 -6.7666 0.2922 13 6 2.0962 -7.2973 2.1181 14 7 2.7867 -6.8662 3.1509 15 14 1.6599 -9.1082 1.9763 16 1 2.7349 -9.8201 1.2397 17 1 1.5206 -9.6915 3.3347 18 1 0.3773 -9.2523 1.2418 19 6 1.5175 -2.0704 1.2591 20 7 2.0193 -0.6917 1.1994 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5134 0.8902 23 1 -0.3633 0.5143 -0.8897 24 1 3.1298 -0.7093 -1.2576 25 1 1.6642 -0.2167 -2.1403 26 1 1.9409 -2.6990 -2.1019 27 1 0.4548 -2.1822 -1.2671 28 1 -0.3344 -3.7508 -0.7957 29 1 -0.3204 -3.6923 0.9833 30 1 -0.3197 -5.2623 0.1439 31 1 3.1306 -4.8408 1.2798 32 1 1.6177 -4.5452 2.1696 33 1 3.0698 -7.4886 3.8390 34 1 0.4275 -2.0607 1.2533 35 1 1.8713 -2.5463 2.1737 36 1 1.7761 -0.1817 2.0354 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307509852.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:56 Heat of formation + Delta-G solvation = 0.413662 kcal Electronic energy + Delta-G solvation = -15007.548918 eV Core-core repulsion = 12719.253931 eV Total energy + Delta-G solvation = -2288.294988 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.41205 -35.91658 -32.62471 -31.62788 -30.16009 -27.34137 -26.64093 -24.88831 -23.37062 -22.06772 -20.00865 -18.07565 -16.75383 -16.09654 -15.07247 -14.78344 -14.47261 -13.88648 -13.65202 -13.35086 -12.87012 -12.61363 -12.41967 -12.14748 -11.86479 -11.70297 -11.18468 -10.98550 -10.84380 -10.78007 -10.46719 -10.25729 -10.10817 -10.01789 -9.62062 -9.15793 -8.41467 -8.20780 -7.12982 -5.99634 -4.00821 3.33914 3.39645 3.43127 4.36020 4.46796 4.86608 5.04610 5.20565 5.25807 5.32435 5.36016 5.55898 5.60672 5.73776 5.79760 5.94375 5.97045 6.04230 6.20132 6.20928 6.29210 6.33146 6.38229 6.65093 6.77536 6.80192 7.22065 7.37625 7.40669 7.57981 7.84406 8.14354 8.25396 8.60920 9.06978 9.63135 11.11116 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.059378 B = 0.007175 C = 0.006919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.442984 B = 3901.578092 C = 4046.108074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.083 3.917 3 H 0.076 0.924 4 C -0.110 4.110 5 C -0.114 4.114 6 C 0.090 3.910 7 H 0.081 0.919 8 N -0.533 5.533 9 C 0.032 3.968 10 C 0.192 3.808 11 C -0.508 4.508 12 H 0.063 0.937 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.897 3.103 16 H -0.280 1.280 17 H -0.288 1.288 18 H -0.274 1.274 19 C 0.022 3.978 20 N -0.680 5.680 21 H 0.064 0.936 22 H 0.048 0.952 23 H 0.057 0.943 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.012 0.988 30 H 0.072 0.928 31 H 0.030 0.970 32 H -0.008 1.008 33 H 0.261 0.739 34 H 0.035 0.965 35 H 0.077 0.923 36 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.073 12.281 -5.703 14.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.028 4.028 3 H 0.094 0.906 4 C -0.148 4.148 5 C -0.152 4.152 6 C -0.020 4.020 7 H 0.099 0.901 8 N -0.256 5.256 9 C -0.117 4.117 10 C 0.067 3.933 11 C -0.546 4.546 12 H 0.081 0.919 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.725 3.275 16 H -0.206 1.206 17 H -0.214 1.214 18 H -0.199 1.199 19 C -0.108 4.108 20 N -0.311 5.311 21 H 0.083 0.917 22 H 0.067 0.933 23 H 0.076 0.924 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.030 0.970 30 H 0.091 0.909 31 H 0.048 0.952 32 H 0.010 0.990 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.226 11.762 -6.246 13.703 hybrid contribution -1.427 -0.427 1.141 1.876 sum -4.653 11.335 -5.105 13.274 Atomic orbital electron populations 1.22589 0.98218 1.02574 1.01447 1.21535 0.92182 0.97419 0.91619 0.90630 1.21568 1.01378 0.95869 0.95985 1.21694 1.00550 0.94438 0.98545 1.21673 1.00021 0.88154 0.92143 0.90130 1.62389 1.06539 1.10904 1.45743 1.22289 0.89568 1.01992 0.97856 1.19726 0.95327 0.92918 0.85290 1.21194 1.34428 0.92287 1.06714 0.91926 1.24989 0.95359 0.99002 0.95293 1.69960 1.38100 1.34928 1.10826 0.86511 0.78823 0.85030 0.77113 1.20621 1.21364 1.19922 1.22745 0.97711 0.88826 1.01548 1.60466 1.63093 1.03185 1.04313 0.91687 0.93252 0.92425 0.91284 0.92029 0.91439 0.92153 0.93593 0.96960 0.90886 0.95237 0.98984 0.92971 0.94709 0.90457 0.84756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.19 8.59 37.16 0.32 -1.87 16 2 C 0.08 1.02 3.68 -67.72 -0.25 0.77 16 3 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.11 -1.40 5.61 -26.65 -0.15 -1.55 16 5 C -0.11 -1.75 4.84 -26.61 -0.13 -1.87 16 6 C 0.09 1.67 2.39 -67.63 -0.16 1.51 16 7 H 0.08 1.63 8.03 -51.93 -0.42 1.22 16 8 N -0.53 -11.68 4.74 -236.23 -1.12 -12.80 16 9 C 0.03 0.62 8.63 60.07 0.52 1.14 16 10 C 0.19 5.07 4.17 -4.97 -0.02 5.05 16 11 C -0.51 -14.45 8.46 -34.44 -0.29 -14.74 16 12 H 0.06 1.77 7.12 -52.49 -0.37 1.39 16 13 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 15 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 C 0.02 0.39 4.85 -3.84 -0.02 0.37 16 20 N -0.68 -9.85 6.65 -106.76 -0.71 -10.56 16 21 H 0.06 0.86 4.80 -51.93 -0.25 0.61 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.06 0.90 4.73 -51.93 -0.25 0.66 16 28 H 0.05 0.78 6.28 -51.93 -0.33 0.46 16 29 H 0.01 0.23 6.26 -51.93 -0.33 -0.09 16 30 H 0.07 1.55 6.76 -51.93 -0.35 1.20 16 31 H 0.03 0.84 8.00 -51.93 -0.42 0.43 16 32 H -0.01 -0.21 6.96 -51.93 -0.36 -0.57 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.03 0.60 4.39 -51.93 -0.23 0.37 16 35 H 0.08 1.53 6.80 -51.93 -0.35 1.18 16 36 H 0.34 4.29 8.90 -39.29 -0.35 3.94 16 LS Contribution 268.40 15.07 4.04 4.04 Total: -1.00 -29.56 268.40 -8.02 -37.58 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -5.67 Total: 0.86 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -0.28 Total: -9.72 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: -1.09 Total: -49.61 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.56 -8.02 -37.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307509852.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.992 kcal (2) G-P(sol) polarization free energy of solvation -29.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds