Wall clock time and date at job start Sun Mar 29 2020 21:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46169 * 2 1 4 4 C 1.53035 * 109.45714 * 240.02567 * 2 1 3 5 5 C 1.53117 * 109.28003 * 299.15727 * 4 2 1 6 6 C 1.53117 * 109.16345 * 302.35258 * 5 4 2 7 7 H 1.09004 * 109.50266 * 297.67110 * 6 5 4 8 8 N 1.46906 * 109.50496 * 177.59281 * 6 5 4 9 9 C 1.46901 * 110.99793 * 298.95508 * 8 6 5 10 10 C 1.46898 * 110.99820 * 174.99824 * 8 6 5 11 11 C 1.50706 * 109.46563 * 189.99919 * 10 8 6 12 12 H 1.07998 * 120.00168 * 359.97438 * 11 10 8 13 13 C 1.37880 * 119.99248 * 180.02562 * 11 10 8 14 14 N 1.31509 * 120.00492 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99607 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47166 * 89.99890 * 15 13 11 17 17 H 1.48491 * 109.47208 * 210.00081 * 15 13 11 18 18 H 1.48505 * 109.47202 * 330.00211 * 15 13 11 19 19 C 1.53034 * 109.27789 * 57.65034 * 6 5 4 20 20 N 1.46840 * 109.52820 * 300.82213 * 19 6 5 21 21 H 1.09002 * 109.47084 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46961 * 299.97254 * 1 2 3 23 23 H 1.09000 * 109.47092 * 59.97295 * 1 2 3 24 24 H 1.09003 * 109.50103 * 179.22594 * 4 2 1 25 25 H 1.08998 * 109.54280 * 59.12229 * 4 2 1 26 26 H 1.09005 * 109.52668 * 182.44267 * 5 4 2 27 27 H 1.09006 * 109.51974 * 62.25777 * 5 4 2 28 28 H 1.09002 * 109.47401 * 59.99808 * 9 8 6 29 29 H 1.09001 * 109.46874 * 299.99821 * 9 8 6 30 30 H 1.09004 * 109.46970 * 179.97438 * 9 8 6 31 31 H 1.08994 * 109.47410 * 309.99936 * 10 8 6 32 32 H 1.08999 * 109.47216 * 70.00266 * 10 8 6 33 33 H 0.97001 * 120.00000 * 180.02562 * 14 13 11 34 34 H 1.09003 * 109.46377 * 60.84008 * 19 6 5 35 35 H 1.09003 * 109.46519 * 180.80589 * 19 6 5 36 36 H 1.00897 * 111.00670 * 185.83988 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 1.5443 -2.1696 -1.2355 6 6 2.0269 -2.8531 0.0468 7 1 3.1167 -2.8756 0.0592 8 7 1.5074 -4.2264 0.0960 9 6 0.0385 -4.2334 0.1078 10 6 2.0467 -4.9520 1.2539 11 6 1.6942 -6.4128 1.1397 12 1 1.1260 -6.7666 0.2922 13 6 2.0962 -7.2973 2.1181 14 7 2.7867 -6.8662 3.1509 15 14 1.6599 -9.1082 1.9763 16 1 2.7349 -9.8201 1.2397 17 1 1.5206 -9.6915 3.3347 18 1 0.3773 -9.2523 1.2418 19 6 1.5175 -2.0704 1.2591 20 7 2.0193 -0.6917 1.1994 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5134 0.8902 23 1 -0.3633 0.5143 -0.8897 24 1 3.1298 -0.7093 -1.2576 25 1 1.6642 -0.2167 -2.1403 26 1 1.9409 -2.6990 -2.1019 27 1 0.4548 -2.1822 -1.2671 28 1 -0.3344 -3.7508 -0.7957 29 1 -0.3204 -3.6923 0.9833 30 1 -0.3197 -5.2623 0.1439 31 1 3.1306 -4.8408 1.2798 32 1 1.6177 -4.5452 2.1696 33 1 3.0698 -7.4886 3.8390 34 1 0.4275 -2.0607 1.2533 35 1 1.8713 -2.5463 2.1737 36 1 1.7761 -0.1817 2.0354 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307509852.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:56 Heat of formation + Delta-G solvation = -21.656847 kcal Electronic energy + Delta-G solvation = -15008.505968 eV Core-core repulsion = 12719.253931 eV Total energy + Delta-G solvation = -2289.252037 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.75294 -37.48585 -34.72877 -32.86113 -31.57539 -29.19871 -27.92806 -26.63984 -24.74378 -23.71491 -21.53915 -19.38405 -18.62455 -17.64058 -16.81503 -16.28152 -15.94329 -15.43643 -15.19517 -14.73489 -14.28265 -14.00839 -13.85906 -13.78072 -13.31308 -12.95236 -12.80931 -12.71296 -12.58833 -12.33727 -12.11158 -12.02201 -11.46634 -11.36059 -11.25515 -11.05326 -10.61613 -9.43715 -8.89586 -8.20396 -6.31187 1.40383 1.42487 1.53338 2.39955 3.10208 3.16532 3.47231 3.87419 3.94441 4.04753 4.20148 4.30963 4.47722 4.50977 4.60206 4.66920 4.70452 4.73589 4.84756 5.02091 5.04621 5.07777 5.14793 5.18369 5.25242 5.32466 5.44133 5.51867 5.64743 6.01579 6.09066 6.35452 6.49705 6.67688 6.85694 7.38639 8.90558 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.059378 B = 0.007175 C = 0.006919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.442984 B = 3901.578092 C = 4046.108074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.080 3.920 3 H 0.100 0.900 4 C -0.106 4.106 5 C -0.106 4.106 6 C 0.087 3.913 7 H 0.054 0.946 8 N -0.542 5.542 9 C 0.037 3.963 10 C 0.212 3.788 11 C -0.527 4.527 12 H 0.063 0.937 13 C 0.000 4.000 14 N -0.935 5.935 15 Si 0.971 3.029 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.263 1.263 19 C 0.037 3.963 20 N -0.687 5.687 21 H 0.045 0.955 22 H 0.055 0.945 23 H 0.078 0.922 24 H 0.061 0.939 25 H 0.092 0.908 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.013 0.987 30 H 0.055 0.945 31 H -0.006 1.006 32 H -0.034 1.034 33 H 0.264 0.736 34 H 0.040 0.960 35 H 0.039 0.961 36 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.289 13.094 -7.109 15.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.029 4.029 3 H 0.118 0.882 4 C -0.144 4.144 5 C -0.144 4.144 6 C -0.022 4.022 7 H 0.073 0.927 8 N -0.265 5.265 9 C -0.111 4.111 10 C 0.085 3.915 11 C -0.565 4.565 12 H 0.082 0.918 13 C -0.198 4.198 14 N -0.575 5.575 15 Si 0.795 3.205 16 H -0.199 1.199 17 H -0.207 1.207 18 H -0.187 1.187 19 C -0.094 4.094 20 N -0.319 5.319 21 H 0.064 0.936 22 H 0.074 0.926 23 H 0.097 0.903 24 H 0.080 0.920 25 H 0.111 0.889 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.031 0.969 30 H 0.074 0.926 31 H 0.013 0.987 32 H -0.016 1.016 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.452 12.604 -7.668 15.410 hybrid contribution -1.016 -0.595 1.570 1.963 sum -5.468 12.009 -6.097 14.536 Atomic orbital electron populations 1.22522 0.97159 1.01724 1.02889 1.21692 0.93037 0.98110 0.90078 0.88222 1.21590 1.01042 0.94196 0.97607 1.21638 1.00975 0.95798 0.95961 1.21718 0.98576 0.86983 0.94931 0.92719 1.62297 1.07984 1.12995 1.43248 1.22264 0.87955 1.01319 0.99527 1.19309 0.93094 0.93019 0.86035 1.21519 1.34635 0.93415 1.06920 0.91843 1.25948 0.94973 1.04130 0.94722 1.70097 1.39011 1.36789 1.11646 0.85358 0.78994 0.78689 0.77420 1.19867 1.20706 1.18731 1.22398 0.97627 0.90345 0.99015 1.60406 1.63448 1.01992 1.06019 0.93559 0.92565 0.90325 0.92007 0.88924 0.91690 0.91240 0.90224 0.96881 0.92640 0.98743 1.01593 0.92701 0.94253 0.94223 0.83554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.64 8.59 71.98 0.62 -3.02 16 2 C 0.08 1.75 3.68 44.94 0.17 1.92 16 3 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 4 C -0.11 -2.42 5.61 30.64 0.17 -2.25 16 5 C -0.11 -3.05 4.84 30.67 0.15 -2.90 16 6 C 0.09 3.30 2.39 44.96 0.11 3.40 16 7 H 0.05 2.32 8.03 -2.39 -0.02 2.30 16 8 N -0.54 -24.33 4.74 -901.29 -4.27 -28.61 16 9 C 0.04 1.47 8.63 127.69 1.10 2.57 16 10 C 0.21 11.73 4.17 85.56 0.36 12.09 16 11 C -0.53 -30.72 8.46 25.60 0.22 -30.51 16 12 H 0.06 3.61 7.12 -2.91 -0.02 3.59 16 13 C 0.00 0.01 5.46 84.66 0.46 0.47 16 14 N -0.93 -57.64 13.29 21.45 0.28 -57.36 16 15 Si 0.97 45.07 29.54 68.60 2.03 47.09 16 16 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 18 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 19 C 0.04 1.31 4.85 86.33 0.42 1.73 16 20 N -0.69 -19.26 6.65 -491.69 -3.27 -22.53 16 21 H 0.05 1.10 4.80 -2.39 -0.01 1.08 16 22 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.07 1.89 4.73 -2.38 -0.01 1.87 16 28 H 0.08 2.57 6.28 -2.39 -0.01 2.56 16 29 H 0.01 0.50 6.26 -2.39 -0.01 0.48 16 30 H 0.05 2.36 6.76 -2.38 -0.02 2.34 16 31 H -0.01 -0.34 8.00 -2.39 -0.02 -0.36 16 32 H -0.03 -1.99 6.96 -2.39 -0.02 -2.01 16 33 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 34 H 0.04 1.34 4.39 -2.39 -0.01 1.33 16 35 H 0.04 1.67 6.80 -2.39 -0.02 1.65 16 36 H 0.35 8.47 8.90 -89.70 -0.80 7.68 16 Total: -1.00 -65.25 268.40 -1.20 -66.45 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.26 Total: 11.45 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: 3.77 Total: -16.50 kcal Atomic # 7 Polarization: -101.24 SS G_CDS: -7.26 Total: -108.49 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -65.25 -1.20 -66.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307509852.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.796 kcal (2) G-P(sol) polarization free energy of solvation -65.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds