Wall clock time and date at job start Sun Mar 29 2020 22:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86796 * 120.00020 * 2 1 4 4 H 1.48502 * 109.47259 * 85.05989 * 3 2 1 5 5 H 1.48503 * 109.47151 * 205.06341 * 3 2 1 6 6 H 1.48501 * 109.46925 * 325.05819 * 3 2 1 7 7 C 1.40051 * 119.99917 * 180.27175 * 2 1 3 8 8 H 1.07998 * 119.99539 * 186.47749 * 7 2 1 9 9 C 1.46372 * 120.00347 * 6.48120 * 7 2 1 10 10 O 1.21692 * 119.99434 * 6.74369 * 9 7 2 11 11 N 1.34773 * 120.00223 * 186.75408 * 9 7 2 12 12 C 1.46503 * 120.00069 * 179.97438 * 11 9 7 13 13 H 1.08998 * 109.53483 * 325.16067 * 12 11 9 14 14 C 1.54205 * 109.53840 * 204.99693 * 12 11 9 15 15 C 1.46288 * 111.98925 * 162.60263 * 14 12 11 16 16 C 1.54122 * 112.20015 * 61.40966 * 15 14 12 17 17 O 1.40319 * 108.70432 * 280.44290 * 16 15 14 18 18 C 1.43988 * 116.58287 * 95.04668 * 17 16 15 19 19 C 1.50618 * 109.54076 * 85.40569 * 12 11 9 20 20 H 0.96995 * 119.99905 * 0.02562 * 1 2 3 21 21 H 0.96995 * 120.00247 * 359.97438 * 11 9 7 22 22 H 1.09004 * 108.97378 * 283.24875 * 14 12 11 23 23 H 1.08992 * 108.97696 * 41.95584 * 14 12 11 24 24 H 1.08992 * 108.93720 * 182.11459 * 15 14 12 25 25 H 1.09001 * 108.93225 * 300.80333 * 15 14 12 26 26 H 1.09001 * 109.59399 * 40.21258 * 16 15 14 27 27 H 1.08998 * 109.59690 * 160.51550 * 16 15 14 28 28 H 1.09001 * 108.69621 * 78.90047 * 18 17 16 29 29 H 1.08999 * 108.69758 * 197.00376 * 18 17 16 30 30 H 1.09007 * 108.88425 * 330.97190 * 19 12 11 31 31 H 1.09002 * 108.88565 * 89.42997 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3838 2.1067 1.3949 5 1 3.5866 1.4123 -0.5931 6 1 1.4943 2.6202 -0.8019 7 6 2.0070 -1.2129 -0.0058 8 1 3.0818 -1.2163 0.0998 9 6 1.2822 -2.4758 -0.1548 10 8 0.0895 -2.4679 -0.3963 11 7 1.9356 -3.6473 -0.0244 12 6 1.2101 -4.9113 -0.1731 13 1 0.2001 -4.8004 0.2215 14 6 1.9470 -6.0230 0.6008 15 6 1.0911 -7.1857 0.8369 16 6 0.6190 -7.8377 -0.4774 17 8 -0.4500 -7.0888 -0.9926 18 6 -0.1216 -6.0886 -1.9749 19 6 1.1449 -5.2864 -1.6304 20 1 -0.4850 0.8400 -0.0004 21 1 2.8863 -3.6535 0.1678 22 1 2.8194 -6.3357 0.0270 23 1 2.2791 -5.6267 1.5602 24 1 1.6470 -7.9220 1.4173 25 1 0.2176 -6.8716 1.4082 26 1 1.4386 -7.8472 -1.1958 27 1 0.2923 -8.8591 -0.2820 28 1 0.0265 -6.5791 -2.9370 29 1 -0.9588 -5.3960 -2.0618 30 1 1.1598 -4.3761 -2.2300 31 1 2.0207 -5.8853 -1.8801 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307516904.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:17 Heat of formation + Delta-G solvation = -123.089774 kcal Electronic energy + Delta-G solvation = -14649.387303 eV Core-core repulsion = 12122.185047 eV Total energy + Delta-G solvation = -2527.202255 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.70308 -39.02226 -36.34169 -34.64899 -33.89722 -32.30726 -28.64942 -27.33162 -26.00880 -22.31169 -21.83816 -21.07299 -19.13090 -17.76269 -17.47742 -17.35850 -16.31497 -15.96138 -15.54250 -14.92689 -14.83738 -14.41314 -14.07843 -13.90346 -13.22687 -13.19128 -12.78565 -12.61604 -12.49817 -12.14576 -12.00379 -11.69904 -11.54179 -11.36710 -10.92912 -10.43441 -9.83163 -9.45562 -8.31930 -6.85091 1.38835 1.40819 1.56751 2.23955 2.47079 2.86452 3.14132 3.60613 3.69509 3.91308 4.02578 4.16160 4.26095 4.40248 4.57858 4.62786 4.66050 4.83758 4.96727 5.08131 5.15966 5.21529 5.30192 5.31712 5.43829 5.89331 6.25723 6.32311 6.48678 6.86600 7.57838 8.50576 8.67492 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.062624 B = 0.007301 C = 0.006952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.005267 B = 3834.206189 C = 4026.731438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.029 3.971 3 Si 0.998 3.002 4 H -0.261 1.261 5 H -0.249 1.249 6 H -0.274 1.274 7 C -0.578 4.578 8 H 0.087 0.913 9 C 0.541 3.459 10 O -0.632 6.632 11 N -0.752 5.752 12 C 0.154 3.846 13 H 0.033 0.967 14 C -0.114 4.114 15 C -0.146 4.146 16 C 0.059 3.941 17 O -0.406 6.406 18 C 0.074 3.926 19 C -0.153 4.153 20 H 0.275 0.725 21 H 0.394 0.606 22 H 0.086 0.914 23 H 0.064 0.936 24 H 0.103 0.897 25 H 0.047 0.953 26 H 0.068 0.932 27 H 0.106 0.894 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.042 -12.036 -0.857 13.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.186 4.186 3 Si 0.817 3.183 4 H -0.185 1.185 5 H -0.172 1.172 6 H -0.199 1.199 7 C -0.615 4.615 8 H 0.105 0.895 9 C 0.344 3.656 10 O -0.520 6.520 11 N -0.405 5.405 12 C 0.048 3.952 13 H 0.051 0.949 14 C -0.152 4.152 15 C -0.184 4.184 16 C -0.017 4.017 17 O -0.326 6.326 18 C -0.003 4.003 19 C -0.192 4.192 20 H 0.084 0.916 21 H 0.228 0.772 22 H 0.104 0.896 23 H 0.083 0.917 24 H 0.121 0.879 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.124 0.876 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.840 -11.991 -0.965 13.373 hybrid contribution 0.540 1.070 0.035 1.199 sum 6.381 -10.921 -0.930 12.682 Atomic orbital electron populations 1.70163 1.09633 1.29008 1.36625 1.26978 0.95477 1.05015 0.91116 0.85009 0.78889 0.75120 0.79263 1.18518 1.17195 1.19870 1.21452 0.95272 0.90454 1.54276 0.89461 1.18581 0.86374 0.84325 0.76273 1.90547 1.17927 1.87983 1.55497 1.45931 1.11975 1.04591 1.78011 1.20357 0.95597 0.84519 0.94722 0.94912 1.20811 0.99217 0.94523 1.00645 1.21089 0.99924 0.97931 0.99428 1.22610 0.90207 0.94918 0.93988 1.87431 1.35268 1.50201 1.59674 1.22793 0.96828 0.89562 0.91116 1.22302 0.99279 1.00002 0.97569 0.91559 0.77249 0.89561 0.91681 0.87856 0.93396 0.91390 0.87576 0.90569 0.92129 0.93479 0.89322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.47 11.90 21.84 0.26 -51.21 16 2 C 0.03 1.64 5.49 85.30 0.47 2.11 16 3 Si 1.00 41.46 29.56 68.60 2.03 43.49 16 4 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 5 H -0.25 -9.59 7.11 99.48 0.71 -8.89 16 6 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.58 -33.28 9.53 24.83 0.24 -33.04 16 8 H 0.09 4.49 7.86 -2.91 -0.02 4.47 16 9 C 0.54 31.97 7.53 86.36 0.65 32.62 16 10 O -0.63 -43.31 14.77 -4.32 -0.06 -43.38 16 11 N -0.75 -34.35 4.99 -448.56 -2.24 -36.59 16 12 C 0.15 6.08 2.15 44.63 0.10 6.18 16 13 H 0.03 1.61 7.26 -2.39 -0.02 1.60 16 14 C -0.11 -3.17 4.83 28.93 0.14 -3.04 16 15 C -0.15 -3.50 5.47 28.91 0.16 -3.34 16 16 C 0.06 1.35 6.38 72.36 0.46 1.81 16 17 O -0.41 -12.86 10.17 -143.43 -1.46 -14.32 16 18 C 0.07 2.39 6.67 72.26 0.48 2.87 16 19 C -0.15 -5.35 5.01 30.10 0.15 -5.20 16 20 H 0.27 15.50 8.29 -92.71 -0.77 14.73 16 21 H 0.39 15.37 8.59 -92.71 -0.80 14.57 16 22 H 0.09 1.93 7.60 -2.39 -0.02 1.91 16 23 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.05 1.39 8.13 -2.39 -0.02 1.37 16 26 H 0.07 1.31 6.98 -2.39 -0.02 1.30 16 27 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.05 1.98 7.83 -2.38 -0.02 1.96 16 31 H 0.09 2.44 6.84 -2.39 -0.02 2.42 16 Total: -1.00 -77.52 255.84 1.70 -75.82 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: 0.33 Total: 25.21 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 2.84 Total: 0.97 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -1.98 Total: -87.80 kcal Atomic # 8 Polarization: -56.17 SS G_CDS: -1.52 Total: -57.69 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -77.52 1.70 -75.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307516904.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.271 kcal (2) G-P(sol) polarization free energy of solvation -77.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds