Wall clock time and date at job start Sun Mar 29 2020 22:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86796 * 119.99907 * 2 1 4 4 H 1.48497 * 109.47199 * 180.02562 * 3 2 1 5 5 H 1.48513 * 109.47252 * 300.00009 * 3 2 1 6 6 H 1.48503 * 109.47413 * 59.99761 * 3 2 1 7 7 C 1.40043 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00155 * 179.97438 * 7 2 1 9 9 C 1.46377 * 120.00458 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99620 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00307 * 179.72666 * 9 7 2 12 12 C 1.46504 * 119.99854 * 180.27510 * 11 9 7 13 13 H 1.08992 * 109.63328 * 34.99493 * 12 11 9 14 14 C 1.50283 * 109.63136 * 155.39700 * 12 11 9 15 15 C 1.54363 * 113.09173 * 211.60720 * 14 12 11 16 16 C 1.54351 * 111.52684 * 319.30369 * 15 14 12 17 17 O 1.39963 * 112.57256 * 319.15498 * 16 15 14 18 18 C 1.44229 * 112.36160 * 97.12338 * 17 16 15 19 19 C 1.45987 * 112.10404 * 277.40450 * 18 17 16 20 20 H 0.96998 * 119.99723 * 0.02562 * 1 2 3 21 21 H 0.97000 * 119.99736 * 0.26784 * 11 9 7 22 22 H 1.08997 * 108.79044 * 332.67450 * 14 12 11 23 23 H 1.09001 * 108.78542 * 90.88680 * 14 12 11 24 24 H 1.09005 * 109.16954 * 198.69666 * 15 14 12 25 25 H 1.08996 * 108.86865 * 79.72437 * 15 14 12 26 26 H 1.09005 * 108.86040 * 198.36197 * 16 15 14 27 27 H 1.09000 * 108.86159 * 79.95598 * 16 15 14 28 28 H 1.09001 * 108.95122 * 156.73429 * 18 17 16 29 29 H 1.08993 * 108.88693 * 38.03969 * 18 17 16 30 30 H 1.08998 * 109.03502 * 299.49215 * 19 18 17 31 31 H 1.08995 * 108.96947 * 180.60585 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8819 2.3965 -1.2126 6 1 1.8819 2.3965 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9491 -3.6477 -0.0045 12 6 1.2165 -4.9164 -0.0106 13 1 0.3054 -4.8104 -0.5992 14 6 2.0789 -5.9945 -0.6045 15 6 1.2687 -7.0733 -1.3546 16 6 -0.0249 -7.4394 -0.5964 17 8 0.1699 -7.5282 0.7867 18 6 -0.2048 -6.3159 1.4725 19 6 0.8560 -5.3137 1.4359 20 1 -0.4850 0.8401 -0.0004 21 1 2.9191 -3.6476 -0.0042 22 1 2.7840 -5.5375 -1.2987 23 1 2.6402 -6.4760 0.1963 24 1 1.8815 -7.9678 -1.4665 25 1 1.0077 -6.6945 -2.3427 26 1 -0.3887 -8.3992 -0.9633 27 1 -0.7789 -6.6785 -0.7981 28 1 -0.4321 -6.5530 2.5119 29 1 -1.0970 -5.9048 1.0003 30 1 1.7427 -5.7165 1.9253 31 1 0.5243 -4.4268 1.9757 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307516905.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:20 Heat of formation + Delta-G solvation = -95.418378 kcal Electronic energy + Delta-G solvation = -14653.488359 eV Core-core repulsion = 12127.486025 eV Total energy + Delta-G solvation = -2526.002334 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.42307 -37.16945 -34.59118 -32.57279 -32.27694 -30.85892 -26.91737 -25.93745 -24.22381 -21.24265 -20.09630 -19.46690 -17.14711 -16.18238 -16.02450 -15.26030 -14.92460 -14.54349 -14.02957 -13.84215 -13.01113 -12.62119 -12.44777 -12.12996 -11.78895 -11.42755 -11.07876 -11.05114 -10.81038 -10.45846 -10.42303 -10.20429 -10.19466 -9.99789 -9.37042 -8.86358 -7.60847 -7.49191 -6.18949 -4.64336 3.12305 3.20660 3.25104 4.09517 4.10993 4.57322 4.76792 5.06530 5.17022 5.22697 5.38846 5.51461 5.68253 5.77322 5.82862 5.97030 5.99655 6.07961 6.14095 6.30677 6.39248 6.48458 6.63723 6.84233 7.43216 7.47514 7.94665 8.13364 8.34316 9.02510 9.55226 10.59946 10.78883 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.062009 B = 0.007262 C = 0.006985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.442349 B = 3854.722102 C = 4007.398288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.581 6.581 11 N -0.762 5.762 12 C 0.158 3.842 13 H 0.074 0.926 14 C -0.123 4.123 15 C -0.141 4.141 16 C 0.058 3.942 17 O -0.376 6.376 18 C 0.065 3.935 19 C -0.163 4.163 20 H 0.267 0.733 21 H 0.379 0.621 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.083 0.917 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.732 -10.159 -0.300 10.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.359 3.641 10 O -0.464 6.464 11 N -0.416 5.416 12 C 0.052 3.948 13 H 0.092 0.908 14 C -0.162 4.162 15 C -0.179 4.179 16 C -0.020 4.020 17 O -0.295 6.295 18 C -0.011 4.011 19 C -0.202 4.202 20 H 0.078 0.922 21 H 0.211 0.789 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.723 -10.199 -0.210 10.346 hybrid contribution 0.915 1.090 -0.122 1.428 sum 2.637 -9.109 -0.331 9.489 Atomic orbital electron populations 1.70032 1.07035 1.27096 1.35556 1.25705 0.94614 1.00279 0.92616 0.86334 0.80506 0.81810 0.78201 1.18802 1.20180 1.20170 1.20942 0.93619 0.89483 1.54277 0.91451 1.18223 0.87234 0.82493 0.76170 1.90587 1.14061 1.86876 1.54901 1.46249 1.08391 1.04684 1.82266 1.20101 0.96101 0.84572 0.94045 0.90811 1.21588 0.98730 0.95797 1.00039 1.22493 0.97628 0.98636 0.99158 1.22307 0.96383 1.01004 0.82339 1.87706 1.87554 1.35938 1.18301 1.21540 0.97095 0.85102 0.97394 1.21589 0.99577 0.99310 0.99729 0.92212 0.78930 0.91741 0.91971 0.91787 0.91448 0.90858 0.92915 0.89923 0.92687 0.92033 0.90081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.03 11.83 55.55 0.66 -22.38 16 2 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 3 Si 0.91 20.17 29.56 -169.99 -5.02 15.15 16 4 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.55 -15.46 9.54 -35.63 -0.34 -15.80 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.34 16 9 C 0.55 15.72 7.66 -12.99 -0.10 15.62 16 10 O -0.58 -18.61 14.69 5.20 0.08 -18.53 16 11 N -0.76 -17.10 4.99 -55.89 -0.28 -17.38 16 12 C 0.16 3.07 2.12 -68.62 -0.15 2.92 16 13 H 0.07 1.62 6.54 -51.93 -0.34 1.28 16 14 C -0.12 -1.92 5.05 -27.37 -0.14 -2.05 16 15 C -0.14 -1.88 6.26 -25.31 -0.16 -2.04 16 16 C 0.06 0.79 6.09 37.87 0.23 1.02 16 17 O -0.38 -5.80 10.35 -32.83 -0.34 -6.14 16 18 C 0.06 1.02 6.12 33.83 0.21 1.23 16 19 C -0.16 -2.93 5.14 -29.39 -0.15 -3.08 16 20 H 0.27 7.25 8.29 -40.82 -0.34 6.91 16 21 H 0.38 7.57 8.51 -40.82 -0.35 7.22 16 22 H 0.06 0.98 7.89 -51.93 -0.41 0.57 16 23 H 0.06 0.93 7.35 -51.93 -0.38 0.55 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.76 6.54 -51.93 -0.34 0.42 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.05 0.89 7.34 -51.93 -0.38 0.51 16 30 H 0.06 1.03 7.55 -51.93 -0.39 0.64 16 31 H 0.08 1.69 8.06 -51.93 -0.42 1.27 16 LS Contribution 254.69 15.07 3.84 3.84 Total: -1.00 -33.20 254.69 -6.01 -39.21 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -4.25 Total: 6.08 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -0.69 Total: 0.16 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.38 Total: -39.76 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.26 Total: -24.67 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -33.20 -6.01 -39.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307516905.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.212 kcal (2) G-P(sol) polarization free energy of solvation -33.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds