Wall clock time and date at job start Sun Mar 29 2020 22:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86796 * 119.99907 * 2 1 4 4 H 1.48497 * 109.47199 * 180.02562 * 3 2 1 5 5 H 1.48513 * 109.47252 * 300.00009 * 3 2 1 6 6 H 1.48503 * 109.47413 * 59.99761 * 3 2 1 7 7 C 1.40043 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00155 * 179.97438 * 7 2 1 9 9 C 1.46377 * 120.00458 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99620 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00307 * 179.72666 * 9 7 2 12 12 C 1.46504 * 119.99854 * 180.27510 * 11 9 7 13 13 H 1.08992 * 109.63328 * 34.99493 * 12 11 9 14 14 C 1.50283 * 109.63136 * 155.39700 * 12 11 9 15 15 C 1.54363 * 113.09173 * 211.60720 * 14 12 11 16 16 C 1.54351 * 111.52684 * 319.30369 * 15 14 12 17 17 O 1.39963 * 112.57256 * 319.15498 * 16 15 14 18 18 C 1.44229 * 112.36160 * 97.12338 * 17 16 15 19 19 C 1.45987 * 112.10404 * 277.40450 * 18 17 16 20 20 H 0.96998 * 119.99723 * 0.02562 * 1 2 3 21 21 H 0.97000 * 119.99736 * 0.26784 * 11 9 7 22 22 H 1.08997 * 108.79044 * 332.67450 * 14 12 11 23 23 H 1.09001 * 108.78542 * 90.88680 * 14 12 11 24 24 H 1.09005 * 109.16954 * 198.69666 * 15 14 12 25 25 H 1.08996 * 108.86865 * 79.72437 * 15 14 12 26 26 H 1.09005 * 108.86040 * 198.36197 * 16 15 14 27 27 H 1.09000 * 108.86159 * 79.95598 * 16 15 14 28 28 H 1.09001 * 108.95122 * 156.73429 * 18 17 16 29 29 H 1.08993 * 108.88693 * 38.03969 * 18 17 16 30 30 H 1.08998 * 109.03502 * 299.49215 * 19 18 17 31 31 H 1.08995 * 108.96947 * 180.60585 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8819 2.3965 -1.2126 6 1 1.8819 2.3965 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9491 -3.6477 -0.0045 12 6 1.2165 -4.9164 -0.0106 13 1 0.3054 -4.8104 -0.5992 14 6 2.0789 -5.9945 -0.6045 15 6 1.2687 -7.0733 -1.3546 16 6 -0.0249 -7.4394 -0.5964 17 8 0.1699 -7.5282 0.7867 18 6 -0.2048 -6.3159 1.4725 19 6 0.8560 -5.3137 1.4359 20 1 -0.4850 0.8401 -0.0004 21 1 2.9191 -3.6476 -0.0042 22 1 2.7840 -5.5375 -1.2987 23 1 2.6402 -6.4760 0.1963 24 1 1.8815 -7.9678 -1.4665 25 1 1.0077 -6.6945 -2.3427 26 1 -0.3887 -8.3992 -0.9633 27 1 -0.7789 -6.6785 -0.7981 28 1 -0.4321 -6.5530 2.5119 29 1 -1.0970 -5.9048 1.0003 30 1 1.7427 -5.7165 1.9253 31 1 0.5243 -4.4268 1.9757 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307516905.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:20 Heat of formation + Delta-G solvation = -120.314670 kcal Electronic energy + Delta-G solvation = -14654.567943 eV Core-core repulsion = 12127.486025 eV Total energy + Delta-G solvation = -2527.081918 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.81733 -39.07279 -36.27923 -34.59374 -33.65857 -32.63933 -28.73617 -27.48227 -25.67770 -22.68673 -21.76793 -21.14646 -19.09988 -17.59858 -17.56173 -17.11919 -16.21402 -15.96968 -15.83761 -15.45098 -14.49397 -14.35342 -14.10803 -13.76824 -13.27812 -13.14192 -12.81458 -12.66571 -12.46211 -12.09708 -11.99279 -11.85964 -11.59708 -11.27802 -10.95130 -10.58268 -9.83789 -9.45140 -8.29590 -6.86130 1.39321 1.39555 1.57389 2.23980 2.46837 2.89809 3.08245 3.55758 3.80414 3.92561 4.08231 4.14747 4.21301 4.42764 4.54800 4.64729 4.72730 4.75807 4.88973 5.08971 5.11871 5.14506 5.24320 5.31538 5.35725 5.88783 6.22972 6.27598 6.32258 6.86573 7.56352 8.49921 8.67536 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.062009 B = 0.007262 C = 0.006985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.442349 B = 3854.722102 C = 4007.398288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.028 3.972 3 Si 0.997 3.003 4 H -0.248 1.248 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.540 3.460 10 O -0.630 6.630 11 N -0.751 5.751 12 C 0.155 3.845 13 H 0.041 0.959 14 C -0.118 4.118 15 C -0.137 4.137 16 C 0.050 3.950 17 O -0.376 6.376 18 C 0.069 3.931 19 C -0.154 4.154 20 H 0.274 0.726 21 H 0.393 0.607 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.070 0.930 26 H 0.103 0.897 27 H 0.038 0.962 28 H 0.105 0.895 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.533 -10.733 -0.426 11.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.187 4.187 3 Si 0.817 3.183 4 H -0.171 1.171 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.612 4.612 8 H 0.104 0.896 9 C 0.344 3.656 10 O -0.517 6.517 11 N -0.404 5.404 12 C 0.049 3.951 13 H 0.060 0.940 14 C -0.156 4.156 15 C -0.176 4.176 16 C -0.028 4.028 17 O -0.295 6.295 18 C -0.007 4.007 19 C -0.193 4.193 20 H 0.084 0.916 21 H 0.227 0.773 22 H 0.087 0.913 23 H 0.093 0.907 24 H 0.109 0.891 25 H 0.089 0.911 26 H 0.121 0.879 27 H 0.056 0.944 28 H 0.123 0.877 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.567 -10.830 -0.338 11.407 hybrid contribution 0.344 1.188 -0.097 1.241 sum 3.912 -9.642 -0.435 10.414 Atomic orbital electron populations 1.70193 1.09480 1.28818 1.36632 1.26962 0.95536 1.04928 0.91227 0.84978 0.79331 0.75468 0.78539 1.17069 1.19333 1.19344 1.21484 0.94709 0.90262 1.54757 0.89619 1.18571 0.86873 0.84315 0.75871 1.90542 1.16091 1.87951 1.57112 1.45965 1.09075 1.04591 1.80815 1.20282 0.95413 0.84381 0.94977 0.94028 1.21516 0.98370 0.95095 1.00608 1.22503 0.97482 0.98791 0.98783 1.22507 0.96392 1.02204 0.81673 1.87703 1.87574 1.35081 1.19135 1.21452 0.95594 0.84906 0.98763 1.21493 1.01007 0.98558 0.98252 0.91618 0.77318 0.91290 0.90715 0.89130 0.91087 0.87898 0.94396 0.87655 0.93946 0.90272 0.93707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.57 11.83 21.83 0.26 -50.32 16 2 C 0.03 1.59 5.50 85.30 0.47 2.06 16 3 Si 1.00 41.16 29.56 68.60 2.03 43.19 16 4 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 5 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 6 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.58 -32.89 9.54 24.83 0.24 -32.65 16 8 H 0.09 4.41 7.85 -2.91 -0.02 4.38 16 9 C 0.54 31.49 7.66 86.36 0.66 32.15 16 10 O -0.63 -42.24 14.69 -4.33 -0.06 -42.30 16 11 N -0.75 -34.15 4.99 -448.95 -2.24 -36.38 16 12 C 0.16 6.06 2.12 44.55 0.09 6.16 16 13 H 0.04 1.90 6.54 -2.39 -0.02 1.88 16 14 C -0.12 -3.45 5.05 30.18 0.15 -3.30 16 15 C -0.14 -3.35 6.26 31.52 0.20 -3.15 16 16 C 0.05 1.27 6.09 72.44 0.44 1.71 16 17 O -0.38 -10.86 10.35 -140.39 -1.45 -12.31 16 18 C 0.07 2.15 6.12 69.83 0.43 2.57 16 19 C -0.15 -5.55 5.14 28.87 0.15 -5.41 16 20 H 0.27 15.22 8.29 -92.71 -0.77 14.45 16 21 H 0.39 15.50 8.51 -92.71 -0.79 14.71 16 22 H 0.07 1.96 7.89 -2.39 -0.02 1.94 16 23 H 0.07 2.02 7.35 -2.39 -0.02 2.00 16 24 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 25 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 27 H 0.04 1.08 6.54 -2.39 -0.02 1.07 16 28 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 29 H 0.04 1.41 7.34 -2.39 -0.02 1.40 16 30 H 0.08 2.54 7.55 -2.39 -0.02 2.52 16 31 H 0.04 1.94 8.06 -2.39 -0.02 1.92 16 Total: -1.00 -73.84 254.69 1.70 -72.14 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.34 Total: 25.84 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 2.83 Total: 0.15 kcal Atomic # 7 Polarization: -84.72 SS G_CDS: -1.98 Total: -86.70 kcal Atomic # 8 Polarization: -53.10 SS G_CDS: -1.52 Total: -54.62 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -73.84 1.70 -72.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307516905.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.175 kcal (2) G-P(sol) polarization free energy of solvation -73.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds